Clone Information

BLAST Search Result

Clone Name	bastl42h05
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|XM_467537.1\| Oryza sativa (japonica cultivar-group), mRNA	345	8e-92
2	dbj\|AP008208.1\| Oryza sativa (japonica cultivar-group) genomic D...	345	8e-92
3	dbj\|AP005113.3\| Oryza sativa (japonica cultivar-group) genomic D...	345	8e-92
4	dbj\|AP005052.3\| Oryza sativa (japonica cultivar-group) genomic D...	345	8e-92
5	dbj\|AK122035.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	345	8e-92
6	dbj\|AP008212.1\| Oryza sativa (japonica cultivar-group) genomic D...	216	5e-53
7	dbj\|AP003524.3\| Oryza sativa (japonica cultivar-group) genomic D...	216	5e-53
8	dbj\|AK100649.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	216	5e-53
9	dbj\|AK111728.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	210	3e-51
10	emb\|Z48795.1\|CER05H5 Caenorhabditis elegans Cosmid R05H5, comple...	42	1.5
11	gb\|AC147712.17\| Medicago truncatula clone mth2-34f1, complete se...	42	1.5
12	emb\|CT009511.9\| M.truncatula DNA sequence from clone MTH2-69I7 o...	42	1.5
13	emb\|AL840640.9\| Mouse DNA sequence from clone RP23-83J23 on chro...	42	1.5
14	gb\|AC162525.4\| Mus musculus BAC clone RP23-188O11 from chromosom...	40	6.0
15	gb\|AC134404.17\| Mus musculus chromosome 3, clone RP24-321M14, co...	40	6.0
16	gb\|AC137128.17\| Mus musculus chromosome 3, clone RP24-271G16, co...	40	6.0
17	gb\|CP000058.1\| Pseudomonas syringae pv. phaseolicola 1448A, comp...	40	6.0
18	gb\|AC130817.4\| Mus musculus BAC clone RP23-68J13 from 16, comple...	40	6.0
19	ref\|XM_547123.2\| PREDICTED: Canis familiaris similar to thioredo...	40	6.0
20	gb\|AC003085.2\| Homo sapiens BAC clone CTB-94H21 from 7, complete...	40	6.0
21	gb\|AC142286.1\| Pan troglodytes BAC clone RP43-169G24 from 7, com...	40	6.0
22	emb\|AL157826.8\| Human DNA sequence from clone RP11-176P17 on chr...	40	6.0
23	gb\|AC015688.11\| Homo sapiens chromosome 17, clone RP11-19P22, co...	40	6.0
24	gb\|AC151277.3\| Mus musculus BAC clone RP24-170B23 from chromosom...	40	6.0
25	gb\|AC147961.3\| Medicago truncatula chromosome 7 BAC clone mth2-3...	40	6.0
26	gb\|AF230482.1\|AF230482 Hydra vulgaris tight junction protein ZO-...	40	6.0
27	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.0
28	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.0
29	dbj\|AP003222.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.0
30	dbj\|AP003815.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.0
31	emb\|AL157955.5\|CNS01RGE Human chromosome 14 DNA sequence BAC R-3...	40	6.0
32	emb\|AL133279.7\|CNS01DUM Human chromosome 14 DNA sequence BAC R-7...	40	6.0

>ref|XM_467537.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 4486

 Score =  345 bits (174), Expect = 8e-92
 Identities = 306/350 (87%)
 Strand = Plus / Plus

                                                                        
Query: 1    attatcttacttgcgaatgcaaagaagaatgctatttatgctgtgcatgttgagtatggc 60
            ||||| |||||||| ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 1591 attattttacttgcaaatgctaagaaaaatgctatttatgctgtgcatgttgagtatggc 1650

                                                                        
Query: 61   tcagaccctgcttctacccgcttggattatatcgcagattttacagttgcaatgccaatt 120
             |||| |||||||| || |||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 1651 acagatcctgcttcaactcgcttggattatatagcagattttacagttgcaatgcctatt 1710

                                                                        
Query: 121  ttaagtcttactggcacacatgaaagccaacctgatggtgagcaggtagttcaagtctat 180
            |||||||| |||||||||||||||||||||||||    ||| || || || ||||| |||
Sbjct: 1711 ttaagtctcactggcacacatgaaagccaacctggcaatgaccaagttgtacaagtttat 1770

                                                                        
Query: 181  tgtgtccaaacaatggccatccagcagtatgggctggagttatcactttgttcgcctcct 240
            ||||| ||||||||||| |||||||||||||||||||| |||||||| ||||| ||||||
Sbjct: 1771 tgtgttcaaacaatggctatccagcagtatgggctggatttatcactctgttcacctcct 1830

                                                                        
Query: 241  acatctgatactatcgcacttggaagagaccctgctatttcacgtgtttatgatacacct 300
            |||  ||| ||||  | ||||||||| || ||  ||||||| |||||| | || ||||||
Sbjct: 1831 acaagtgaaactactggacttggaagggatccatctatttctcgtgttcacgagacacct 1890

                                                              
Query: 301  ctggaagtggtaggagcagagtcatccacgggaactagctttacagattc 350
            |||||||||||||||||||||||||||| |  ||||||||| || |||||
Sbjct: 1891 ctggaagtggtaggagcagagtcatccatgccaactagcttcaccgattc 1940



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 50/54 (92%)
 Strand = Plus / Plus

                                                                  
Query: 386  ttgatcttaagccatcagctccaccacttgcatacacagaangtgatggttctg 439
            |||||| ||| |||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 1994 ttgatcctaaaccatcagctccaccacttacatacacagaaggtgatggttctg 2047

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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score =  345 bits (174), Expect = 8e-92
 Identities = 306/350 (87%)
 Strand = Plus / Minus

                                                                            
Query: 1        attatcttacttgcgaatgcaaagaagaatgctatttatgctgtgcatgttgagtatggc 60
                ||||| |||||||| ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 30040189 attattttacttgcaaatgctaagaaaaatgctatttatgctgtgcatgttgagtatggc 30040130

                                                                            
Query: 61       tcagaccctgcttctacccgcttggattatatcgcagattttacagttgcaatgccaatt 120
                 |||| |||||||| || |||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 30040129 acagatcctgcttcaactcgcttggattatatagcagattttacagttgcaatgcctatt 30040070

                                                                            
Query: 121      ttaagtcttactggcacacatgaaagccaacctgatggtgagcaggtagttcaagtctat 180
                |||||||| |||||||||||||||||||||||||    ||| || || || ||||| |||
Sbjct: 30040069 ttaagtctcactggcacacatgaaagccaacctggcaatgaccaagttgtacaagtttat 30040010

                                                                            
Query: 181      tgtgtccaaacaatggccatccagcagtatgggctggagttatcactttgttcgcctcct 240
                ||||| ||||||||||| |||||||||||||||||||| |||||||| ||||| ||||||
Sbjct: 30040009 tgtgttcaaacaatggctatccagcagtatgggctggatttatcactctgttcacctcct 30039950

                                                                            
Query: 241      acatctgatactatcgcacttggaagagaccctgctatttcacgtgtttatgatacacct 300
                |||  ||| ||||  | ||||||||| || ||  ||||||| |||||| | || ||||||
Sbjct: 30039949 acaagtgaaactactggacttggaagggatccatctatttctcgtgttcacgagacacct 30039890

                                                                  
Query: 301      ctggaagtggtaggagcagagtcatccacgggaactagctttacagattc 350
                |||||||||||||||||||||||||||| |  ||||||||| || |||||
Sbjct: 30039889 ctggaagtggtaggagcagagtcatccatgccaactagcttcaccgattc 30039840



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 50/54 (92%)
 Strand = Plus / Minus

                                                                      
Query: 386      ttgatcttaagccatcagctccaccacttgcatacacagaangtgatggttctg 439
                |||||| ||| |||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 30039683 ttgatcctaaaccatcagctccaccacttacatacacagaaggtgatggttctg 30039630

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>dbj|AP005113.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0685G12
          Length = 149155

 Score =  345 bits (174), Expect = 8e-92
 Identities = 306/350 (87%)
 Strand = Plus / Minus

                                                                         
Query: 1     attatcttacttgcgaatgcaaagaagaatgctatttatgctgtgcatgttgagtatggc 60
             ||||| |||||||| ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 19786 attattttacttgcaaatgctaagaaaaatgctatttatgctgtgcatgttgagtatggc 19727

                                                                         
Query: 61    tcagaccctgcttctacccgcttggattatatcgcagattttacagttgcaatgccaatt 120
              |||| |||||||| || |||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 19726 acagatcctgcttcaactcgcttggattatatagcagattttacagttgcaatgcctatt 19667

                                                                         
Query: 121   ttaagtcttactggcacacatgaaagccaacctgatggtgagcaggtagttcaagtctat 180
             |||||||| |||||||||||||||||||||||||    ||| || || || ||||| |||
Sbjct: 19666 ttaagtctcactggcacacatgaaagccaacctggcaatgaccaagttgtacaagtttat 19607

                                                                         
Query: 181   tgtgtccaaacaatggccatccagcagtatgggctggagttatcactttgttcgcctcct 240
             ||||| ||||||||||| |||||||||||||||||||| |||||||| ||||| ||||||
Sbjct: 19606 tgtgttcaaacaatggctatccagcagtatgggctggatttatcactctgttcacctcct 19547

                                                                         
Query: 241   acatctgatactatcgcacttggaagagaccctgctatttcacgtgtttatgatacacct 300
             |||  ||| ||||  | ||||||||| || ||  ||||||| |||||| | || ||||||
Sbjct: 19546 acaagtgaaactactggacttggaagggatccatctatttctcgtgttcacgagacacct 19487

                                                               
Query: 301   ctggaagtggtaggagcagagtcatccacgggaactagctttacagattc 350
             |||||||||||||||||||||||||||| |  ||||||||| || |||||
Sbjct: 19486 ctggaagtggtaggagcagagtcatccatgccaactagcttcaccgattc 19437



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 50/54 (92%)
 Strand = Plus / Minus

                                                                   
Query: 386   ttgatcttaagccatcagctccaccacttgcatacacagaangtgatggttctg 439
             |||||| ||| |||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 19280 ttgatcctaaaccatcagctccaccacttacatacacagaaggtgatggttctg 19227

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>dbj|AP005052.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0654B04
          Length = 156907

 Score =  345 bits (174), Expect = 8e-92
 Identities = 306/350 (87%)
 Strand = Plus / Minus

                                                                          
Query: 1      attatcttacttgcgaatgcaaagaagaatgctatttatgctgtgcatgttgagtatggc 60
              ||||| |||||||| ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 140465 attattttacttgcaaatgctaagaaaaatgctatttatgctgtgcatgttgagtatggc 140406

                                                                          
Query: 61     tcagaccctgcttctacccgcttggattatatcgcagattttacagttgcaatgccaatt 120
               |||| |||||||| || |||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 140405 acagatcctgcttcaactcgcttggattatatagcagattttacagttgcaatgcctatt 140346

                                                                          
Query: 121    ttaagtcttactggcacacatgaaagccaacctgatggtgagcaggtagttcaagtctat 180
              |||||||| |||||||||||||||||||||||||    ||| || || || ||||| |||
Sbjct: 140345 ttaagtctcactggcacacatgaaagccaacctggcaatgaccaagttgtacaagtttat 140286

                                                                          
Query: 181    tgtgtccaaacaatggccatccagcagtatgggctggagttatcactttgttcgcctcct 240
              ||||| ||||||||||| |||||||||||||||||||| |||||||| ||||| ||||||
Sbjct: 140285 tgtgttcaaacaatggctatccagcagtatgggctggatttatcactctgttcacctcct 140226

                                                                          
Query: 241    acatctgatactatcgcacttggaagagaccctgctatttcacgtgtttatgatacacct 300
              |||  ||| ||||  | ||||||||| || ||  ||||||| |||||| | || ||||||
Sbjct: 140225 acaagtgaaactactggacttggaagggatccatctatttctcgtgttcacgagacacct 140166

                                                                
Query: 301    ctggaagtggtaggagcagagtcatccacgggaactagctttacagattc 350
              |||||||||||||||||||||||||||| |  ||||||||| || |||||
Sbjct: 140165 ctggaagtggtaggagcagagtcatccatgccaactagcttcaccgattc 140116



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 50/54 (92%)
 Strand = Plus / Minus

                                                                    
Query: 386    ttgatcttaagccatcagctccaccacttgcatacacagaangtgatggttctg 439
              |||||| ||| |||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 139959 ttgatcctaaaccatcagctccaccacttacatacacagaaggtgatggttctg 139906

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>dbj|AK122035.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033112L23, full
            insert sequence
          Length = 4485

 Score =  345 bits (174), Expect = 8e-92
 Identities = 306/350 (87%)
 Strand = Plus / Plus

                                                                        
Query: 1    attatcttacttgcgaatgcaaagaagaatgctatttatgctgtgcatgttgagtatggc 60
            ||||| |||||||| ||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct: 1590 attattttacttgcaaatgctaagaaaaatgctatttatgctgtgcatgttgagtatggc 1649

                                                                        
Query: 61   tcagaccctgcttctacccgcttggattatatcgcagattttacagttgcaatgccaatt 120
             |||| |||||||| || |||||||||||||| ||||||||||||||||||||||| |||
Sbjct: 1650 acagatcctgcttcaactcgcttggattatatagcagattttacagttgcaatgcctatt 1709

                                                                        
Query: 121  ttaagtcttactggcacacatgaaagccaacctgatggtgagcaggtagttcaagtctat 180
            |||||||| |||||||||||||||||||||||||    ||| || || || ||||| |||
Sbjct: 1710 ttaagtctcactggcacacatgaaagccaacctggcaatgaccaagttgtacaagtttat 1769

                                                                        
Query: 181  tgtgtccaaacaatggccatccagcagtatgggctggagttatcactttgttcgcctcct 240
            ||||| ||||||||||| |||||||||||||||||||| |||||||| ||||| ||||||
Sbjct: 1770 tgtgttcaaacaatggctatccagcagtatgggctggatttatcactctgttcacctcct 1829

                                                                        
Query: 241  acatctgatactatcgcacttggaagagaccctgctatttcacgtgtttatgatacacct 300
            |||  ||| ||||  | ||||||||| || ||  ||||||| |||||| | || ||||||
Sbjct: 1830 acaagtgaaactactggacttggaagggatccatctatttctcgtgttcacgagacacct 1889

                                                              
Query: 301  ctggaagtggtaggagcagagtcatccacgggaactagctttacagattc 350
            |||||||||||||||||||||||||||| |  ||||||||| || |||||
Sbjct: 1890 ctggaagtggtaggagcagagtcatccatgccaactagcttcaccgattc 1939



 Score = 77.8 bits (39), Expect = 3e-11
 Identities = 50/54 (92%)
 Strand = Plus / Plus

                                                                  
Query: 386  ttgatcttaagccatcagctccaccacttgcatacacagaangtgatggttctg 439
            |||||| ||| |||||||||||||||||| ||||||||||| ||||||||||||
Sbjct: 1993 ttgatcctaaaccatcagctccaccacttacatacacagaaggtgatggttctg 2046

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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score =  216 bits (109), Expect = 5e-53
 Identities = 208/241 (86%)
 Strand = Plus / Plus

                                                                            
Query: 10       cttgcgaatgcaaagaagaatgctatttatgctgtgcatgttgagtatggctcagaccct 69
                ||||| ||||| || ||||||||||||||||||||||||||||| |||||| |||| |||
Sbjct: 11066685 cttgcaaatgccaaaaagaatgctatttatgctgtgcatgttgaatatggcccagatcct 11066744

                                                                            
Query: 70       gcttctacccgcttggattatatcgcagattttacagttgcaatgccaattttaagtctt 129
                ||||||||  | ||||| ||||| || |||||||||||||||||||| ||| ||||||| 
Sbjct: 11066745 gcttctactagattggactatatagcggattttacagttgcaatgcctattctaagtctg 11066804

                                                                            
Query: 130      actggcacacatgaaagccaacctgatggtgagcaggtagttcaagtctattgtgtccaa 189
                || || ||||| ||||||||||  |||  ||| ||| |||||||||| ||||||||||| 
Sbjct: 11066805 acaggaacacacgaaagccaactggatactgaacagatagttcaagtgtattgtgtccag 11066864

                                                                            
Query: 190      acaatggccatccagcagtatgggctggagttatcactttgttcgcctcctacatctgat 249
                |||||||| ||||||||||||||  |||| ||||| ||||||| |||||||||| |||||
Sbjct: 11066865 acaatggctatccagcagtatggattggaattatctctttgtttgcctcctacagctgat 11066924

                 
Query: 250      a 250
                |
Sbjct: 11066925 a 11066925

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>dbj|AP003524.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0501G08
          Length = 173505

 Score =  216 bits (109), Expect = 5e-53
 Identities = 208/241 (86%)
 Strand = Plus / Plus

                                                                          
Query: 10     cttgcgaatgcaaagaagaatgctatttatgctgtgcatgttgagtatggctcagaccct 69
              ||||| ||||| || ||||||||||||||||||||||||||||| |||||| |||| |||
Sbjct: 150767 cttgcaaatgccaaaaagaatgctatttatgctgtgcatgttgaatatggcccagatcct 150826

                                                                          
Query: 70     gcttctacccgcttggattatatcgcagattttacagttgcaatgccaattttaagtctt 129
              ||||||||  | ||||| ||||| || |||||||||||||||||||| ||| ||||||| 
Sbjct: 150827 gcttctactagattggactatatagcggattttacagttgcaatgcctattctaagtctg 150886

                                                                          
Query: 130    actggcacacatgaaagccaacctgatggtgagcaggtagttcaagtctattgtgtccaa 189
              || || ||||| ||||||||||  |||  ||| ||| |||||||||| ||||||||||| 
Sbjct: 150887 acaggaacacacgaaagccaactggatactgaacagatagttcaagtgtattgtgtccag 150946

                                                                          
Query: 190    acaatggccatccagcagtatgggctggagttatcactttgttcgcctcctacatctgat 249
              |||||||| ||||||||||||||  |||| ||||| ||||||| |||||||||| |||||
Sbjct: 150947 acaatggctatccagcagtatggattggaattatctctttgtttgcctcctacagctgat 151006

               
Query: 250    a 250
              |
Sbjct: 151007 a 151007

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>dbj|AK100649.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023110O17, full
            insert sequence
          Length = 3967

 Score =  216 bits (109), Expect = 5e-53
 Identities = 208/241 (86%)
 Strand = Plus / Plus

                                                                        
Query: 10   cttgcgaatgcaaagaagaatgctatttatgctgtgcatgttgagtatggctcagaccct 69
            ||||| ||||| || ||||||||||||||||||||||||||||| |||||| |||| |||
Sbjct: 1223 cttgcaaatgccaaaaagaatgctatttatgctgtgcatgttgaatatggcccagatcct 1282

                                                                        
Query: 70   gcttctacccgcttggattatatcgcagattttacagttgcaatgccaattttaagtctt 129
            ||||||||  | ||||| ||||| || |||||||||||||||||||| ||| ||||||| 
Sbjct: 1283 gcttctactagattggactatatagcggattttacagttgcaatgcctattctaagtctg 1342

                                                                        
Query: 130  actggcacacatgaaagccaacctgatggtgagcaggtagttcaagtctattgtgtccaa 189
            || || ||||| ||||||||||  |||  ||| ||| |||||||||| ||||||||||| 
Sbjct: 1343 acaggaacacacgaaagccaactggatactgaacagatagttcaagtgtattgtgtccag 1402

                                                                        
Query: 190  acaatggccatccagcagtatgggctggagttatcactttgttcgcctcctacatctgat 249
            |||||||| ||||||||||||||  |||| ||||| ||||||| |||||||||| |||||
Sbjct: 1403 acaatggctatccagcagtatggattggaattatctctttgtttgcctcctacagctgat 1462

             
Query: 250  a 250
            |
Sbjct: 1463 a 1463

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>dbj|AK111728.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023037K06, full
            insert sequence
          Length = 4491

 Score =  210 bits (106), Expect = 3e-51
 Identities = 196/226 (86%)
 Strand = Plus / Plus

                                                                        
Query: 25   aagaatgctatttatgctgtgcatgttgagtatggctcagaccctgcttctacccgcttg 84
            ||||||||||||||||||||||||||||| |||||| |||| |||||||||||  | |||
Sbjct: 1646 aagaatgctatttatgctgtgcatgttgaatatggcccagatcctgcttctactagattg 1705

                                                                        
Query: 85   gattatatcgcagattttacagttgcaatgccaattttaagtcttactggcacacatgaa 144
            || ||||| || |||||||||||||||||||| ||| ||||||| || || ||||| |||
Sbjct: 1706 gactatatagcggattttacagttgcaatgcctattctaagtctgacaggaacacacgaa 1765

                                                                        
Query: 145  agccaacctgatggtgagcaggtagttcaagtctattgtgtccaaacaatggccatccag 204
            |||||||  |||  ||| ||| |||||||||| ||||||||||| |||||||| ||||||
Sbjct: 1766 agccaactggatactgaacagatagttcaagtgtattgtgtccagacaatggctatccag 1825

                                                          
Query: 205  cagtatgggctggagttatcactttgttcgcctcctacatctgata 250
            ||||||||  |||| ||||| ||||||| |||||||||| ||||||
Sbjct: 1826 cagtatggattggaattatctctttgtttgcctcctacagctgata 1871

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>emb|Z48795.1|CER05H5 Caenorhabditis elegans Cosmid R05H5, complete sequence
          Length = 24186

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                 
Query: 356  aacaatcaacttttgatcaga 376
            |||||||||||||||||||||
Sbjct: 3009 aacaatcaacttttgatcaga 2989

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>gb|AC147712.17| Medicago truncatula clone mth2-34f1, complete sequence
          Length = 136410

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                       
Query: 7      ttacttgcgaatgcaaagaagaatgctatttatgctgtgca 47
              |||||||| |||||  ||| ||||||||| |||||||||||
Sbjct: 133985 ttacttgcaaatgcccagaggaatgctatatatgctgtgca 134025

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>emb|CT009511.9| M.truncatula DNA sequence from clone MTH2-69I7 on chromosome 3,
             complete sequence
          Length = 116999

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 36/41 (87%)
 Strand = Plus / Plus

                                                      
Query: 7     ttacttgcgaatgcaaagaagaatgctatttatgctgtgca 47
             |||||||| |||||  ||| ||||||||| |||||||||||
Sbjct: 17367 ttacttgcaaatgcccagaggaatgctatatatgctgtgca 17407

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>emb|AL840640.9| Mouse DNA sequence from clone RP23-83J23 on chromosome X, complete
             sequence
          Length = 113157

 Score = 42.1 bits (21), Expect = 1.5
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 127   cttactggcacacatgaaagc 147
             |||||||||||||||||||||
Sbjct: 65959 cttactggcacacatgaaagc 65939

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>gb|AC162525.4| Mus musculus BAC clone RP23-188O11 from chromosome 17, complete
             sequence
          Length = 196013

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 366   ttttgatcagatttcagagt 385
             ||||||||||||||||||||
Sbjct: 14960 ttttgatcagatttcagagt 14979

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>gb|AC134404.17| Mus musculus chromosome 3, clone RP24-321M14, complete sequence
          Length = 218224

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 260  ttggaagagaccctgctatt 279
            ||||||||||||||||||||
Sbjct: 2368 ttggaagagaccctgctatt 2387

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>gb|AC137128.17| Mus musculus chromosome 3, clone RP24-271G16, complete sequence
          Length = 182140

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 260    ttggaagagaccctgctatt 279
              ||||||||||||||||||||
Sbjct: 147036 ttggaagagaccctgctatt 147055

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>gb|CP000058.1| Pseudomonas syringae pv. phaseolicola 1448A, complete genome
          Length = 5928787

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 138     acatgaaagccaacctgatg 157
               ||||||||||||||||||||
Sbjct: 3837733 acatgaaagccaacctgatg 3837752

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>gb|AC130817.4| Mus musculus BAC clone RP23-68J13 from 16, complete sequence
          Length = 193917

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 373    cagatttcagagtttgatct 392
              ||||||||||||||||||||
Sbjct: 124710 cagatttcagagtttgatct 124691

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>ref|XM_547123.2| PREDICTED: Canis familiaris similar to thioredoxin domain containing
            11 (LOC490003), mRNA
          Length = 1875

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 60   ctcagaccctgcttctaccc 79
            ||||||||||||||||||||
Sbjct: 1308 ctcagaccctgcttctaccc 1327

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>gb|AC003085.2| Homo sapiens BAC clone CTB-94H21 from 7, complete sequence
          Length = 124836

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 367    tttgatcagatttcagagtt 386
              ||||||||||||||||||||
Sbjct: 102118 tttgatcagatttcagagtt 102099

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>gb|AC142286.1| Pan troglodytes BAC clone RP43-169G24 from 7, complete sequence
          Length = 194546

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 367   tttgatcagatttcagagtt 386
             ||||||||||||||||||||
Sbjct: 42677 tttgatcagatttcagagtt 42696

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>emb|AL157826.8| Human DNA sequence from clone RP11-176P17 on chromosome 9p22.3-24.1
              Contains part of a variant of the PTPRD gene for protein
              tyrosine phosphatase, receptor type, D (HPTP, PTPD, HPTPD),
              complete sequence
          Length = 149087

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 24     gaagaatgctatttatgctg 43
              ||||||||||||||||||||
Sbjct: 123054 gaagaatgctatttatgctg 123035

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>gb|AC015688.11| Homo sapiens chromosome 17, clone RP11-19P22, complete sequence
          Length = 152351

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 121   ttaagtcttactggcacaca 140
             ||||||||||||||||||||
Sbjct: 85141 ttaagtcttactggcacaca 85160

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>gb|AC151277.3| Mus musculus BAC clone RP24-170B23 from chromosome 17, complete
             sequence
          Length = 146255

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 366   ttttgatcagatttcagagt 385
             ||||||||||||||||||||
Sbjct: 98543 ttttgatcagatttcagagt 98562

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>gb|AC147961.3| Medicago truncatula chromosome 7 BAC clone mth2-39i23, complete sequence
          Length = 131165

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 386    ttgatcttaagccatcagct 405
              ||||||||||||||||||||
Sbjct: 120751 ttgatcttaagccatcagct 120732

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>gb|AF230482.1|AF230482 Hydra vulgaris tight junction protein ZO-1 (ZO-1) mRNA, complete cds
          Length = 5888

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 355  aaacaatcaacttttgatca 374
            ||||||||||||||||||||
Sbjct: 2348 aaacaatcaacttttgatca 2367

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 207      gtatgggctggagttatcac 226
                ||||||||||||||||||||
Sbjct: 19285754 gtatgggctggagttatcac 19285735

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 404      ctccaccacttgcatacaca 423
                ||||||||||||||||||||
Sbjct: 27206151 ctccaccacttgcatacaca 27206132

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>dbj|AP003222.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0003E08
          Length = 135014

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 404    ctccaccacttgcatacaca 423
              ||||||||||||||||||||
Sbjct: 113829 ctccaccacttgcatacaca 113810

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>dbj|AP003815.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1163_G04
          Length = 106253

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 207   gtatgggctggagttatcac 226
             ||||||||||||||||||||
Sbjct: 61980 gtatgggctggagttatcac 61961

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>emb|AL157955.5|CNS01RGE Human chromosome 14 DNA sequence BAC R-300J18 of library RPCI-11 from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 177169

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 20     caaagaagaatgctatttat 39
              ||||||||||||||||||||
Sbjct: 155942 caaagaagaatgctatttat 155961

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>emb|AL133279.7|CNS01DUM Human chromosome 14 DNA sequence BAC R-753D20 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 197224

 Score = 40.1 bits (20), Expect = 6.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 20    caaagaagaatgctatttat 39
             ||||||||||||||||||||
Sbjct: 10947 caaagaagaatgctatttat 10966


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,615,987
Number of Sequences: 3902068
Number of extensions: 3615987
Number of successful extensions: 83190
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 32
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 83072
Number of HSP's gapped (non-prelim): 113
length of query: 445
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 423
effective length of database: 17,147,199,772
effective search space: 7253265503556
effective search space used: 7253265503556
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result