ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl42h03 |
|---|---|
| Clone Library Name | barley_pub |
>YGY3_HALSQ (P21561) Hypothetical 50.6 kDa protein in the 5'region of gyrA and| gyrB (ORF 3) Length = 437 Score = 36.6 bits (83), Expect = 0.015 Identities = 35/110 (31%), Positives = 44/110 (40%), Gaps = 5/110 (4%) Frame = +1 Query: 61 SRSPHRSRCPAPRRPGRR--DEEPLPATRRPLRIRAR-PPHARS--GSVPGGGRDHHTGD 225 SR HR RP R DE+ R P R R PP AR PG G HH Sbjct: 180 SRGTHRRHLRQAPRPAVRGPDEDQAREFRGPRHRRERHPPTARDVLRGEPGHGDGHHLEG 239 Query: 226 PDAQARPRRLFLGVLALQPQAPEQVLDGIGHADRVR*PGGLEVKGLHQRG 375 + RP+ G A PQ ++ G A + P L V+ +H+ G Sbjct: 240 RRGRPRPQGREAGRGAHPPQVRARIYLAAGEARGLPEPRPLGVRTVHRGG 289
>ICP0_EHV1V (P84445) Trans-acting transcriptional protein ICP0 (Infected cell| protein 0) Length = 532 Score = 35.8 bits (81), Expect = 0.025 Identities = 32/86 (37%), Positives = 37/86 (43%), Gaps = 11/86 (12%) Frame = +1 Query: 22 SDEPLIRNSKTLVSRS----PHRSRCPAP---RRPGRRDEEPLPATRRPLRIRARPPHAR 180 SDE NS R P R+R P RR GRR P PA+RR R+R R P R Sbjct: 239 SDETSTDNSSAQAPRQEDSRPARARPGPPTRGRRRGRRPAAPGPASRRSARLRRRQP--R 296 Query: 181 SGSVPGGGRDHH----TGDPDAQARP 246 + S GG + T D D P Sbjct: 297 TNSRTNGGDNGEIIDLTLDSDGDTEP 322
>ICP0_EHV1B (P28990) Trans-acting transcriptional protein ICP0| Length = 532 Score = 35.8 bits (81), Expect = 0.025 Identities = 32/86 (37%), Positives = 37/86 (43%), Gaps = 11/86 (12%) Frame = +1 Query: 22 SDEPLIRNSKTLVSRS----PHRSRCPAP---RRPGRRDEEPLPATRRPLRIRARPPHAR 180 SDE NS R P R+R P RR GRR P PA+RR R+R R P R Sbjct: 239 SDETSTDNSSAQAPRQEDSRPARARPGPPTRGRRRGRRPAAPGPASRRSARLRRRQP--R 296 Query: 181 SGSVPGGGRDHH----TGDPDAQARP 246 + S GG + T D D P Sbjct: 297 TNSRTNGGDNGEIIDLTLDSDGDTEP 322
>CAC1B_HUMAN (Q00975) Voltage-dependent N-type calcium channel alpha-1B subunit| (Voltage-gated calcium channel alpha subunit Cav2.2) (Calcium channel, L type, alpha-1 polypeptide isoform 5) (Brain calcium channel III) (BIII) Length = 2339 Score = 35.0 bits (79), Expect = 0.043 Identities = 28/70 (40%), Positives = 34/70 (48%), Gaps = 11/70 (15%) Frame = +1 Query: 76 RSRCPAPR----RPGRRDEEPLPATRRPLRIRARPPHARS----GSVPGGGR-DHHTGDP 228 + R AP+ PG R+E P P R + A PP ARS G P GGR H G P Sbjct: 866 QDRAEAPKAESGEPGAREERPRPH-RSHSKEAAGPPEARSERGRGPGPEGGRRHHRRGSP 924 Query: 229 D--AQARPRR 252 + A+ PRR Sbjct: 925 EEAAEREPRR 934
>ADA2A_CAVPO (Q60474) Alpha-2A adrenergic receptor (Alpha-2A adrenoceptor)| (Alpha-2A adrenoreceptor) (Alpha-2AAR) Length = 450 Score = 34.3 bits (77), Expect = 0.073 Identities = 23/64 (35%), Positives = 28/64 (43%), Gaps = 1/64 (1%) Frame = -3 Query: 375 PTLMESLDFEPTRSSNSVRMTDSVQNLLWGLRLKSE-NTEEEPPGPSLRVRVPGVMVSAA 199 P E+LD E + SS + GLR KS+ + PG SL R PG S Sbjct: 285 PRDAEALDLEESSSSEHAERPPGARRPERGLRAKSKARASQVKPGDSLPRRAPGAAGSGT 344 Query: 198 SGDG 187 SG G Sbjct: 345 SGSG 348
>PABP_SCHPO (P31209) Polyadenylate-binding protein (Poly(A)-binding protein)| (PABP) Length = 653 Score = 32.7 bits (73), Expect = 0.21 Identities = 24/73 (32%), Positives = 30/73 (41%), Gaps = 1/73 (1%) Frame = +1 Query: 88 PAPRRPGRRDEEPLPATRRPLRIRARPPHARSGSVPGGGRDHHTGDPDAQARPRRLFLGV 267 PAP PG P+PA RP+ + GSVP G P P R Sbjct: 525 PAPGYPGMNARGPVPAQGRPMMM--------PGSVPSAGPAEAEAVPAVPGMPERFTAAD 576 Query: 268 LALQP-QAPEQVL 303 LA P ++ +QVL Sbjct: 577 LAAVPEESRKQVL 589
>KIF1C_MOUSE (O35071) Kinesin-like protein KIF1C| Length = 1100 Score = 32.3 bits (72), Expect = 0.28 Identities = 21/56 (37%), Positives = 25/56 (44%) Frame = +1 Query: 88 PAPRRPGRRDEEPLPATRRPLRIRARPPHARSGSVPGGGRDHHTGDPDAQARPRRL 255 PAP+ P P P RRP R RP +R S+ GG R G Q P+ L Sbjct: 999 PAPQPPEEVTVPPAPPNRRPPSPR-RPHRSRRNSLDGGSRSR--GGGSTQPEPQHL 1051
>RSP2_CAEEL (Q23120) Probable splicing factor, arginine/serine-rich 2| (RNA-binding protein srp-4) (CeSRp40) Length = 281 Score = 31.6 bits (70), Expect = 0.48 Identities = 24/71 (33%), Positives = 31/71 (43%), Gaps = 7/71 (9%) Frame = +1 Query: 61 SRSPHRSRCPAPRR--PG-----RRDEEPLPATRRPLRIRARPPHARSGSVPGGGRDHHT 219 SRSP RSR P RR PG R+ P R R R+ ++S S GG R Sbjct: 200 SRSPTRSRSPPARRRSPGSDRSDRKSRSASPKKRSDKRARS---ESKSRSRSGGRRSRSN 256 Query: 220 GDPDAQARPRR 252 P+ P++ Sbjct: 257 SPPNRSPSPKK 267
>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1| Length = 917 Score = 31.6 bits (70), Expect = 0.48 Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 3/56 (5%) Frame = +1 Query: 31 PLIRNSKTLVSRSP---HRSRCPAPRRPGRRDEEPLPATRRPLRIRARPPHARSGS 189 P+ ++ + S SP R R P+P P RR P P RR R + PP RS S Sbjct: 553 PVTKSGRRRRSPSPPPTRRRRSPSPAPPPRRRRTPTPPPRR--RTPSPPPRRRSPS 606 Score = 27.3 bits (59), Expect = 9.0 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 1/47 (2%) Frame = +1 Query: 58 VSRSPHRSRCPAPRRPGRRDEEPLPA-TRRPLRIRARPPHARSGSVP 195 V++S R R P+P P RR P PA R R PP R+ S P Sbjct: 554 VTKSGRRRRSPSP-PPTRRRRSPSPAPPPRRRRTPTPPPRRRTPSPP 599
>PKAA_STRCO (P54739) Serine/threonine protein kinase pkaA (EC 2.7.11.1)| Length = 543 Score = 31.6 bits (70), Expect = 0.48 Identities = 18/50 (36%), Positives = 25/50 (50%), Gaps = 3/50 (6%) Frame = +1 Query: 64 RSPHRSRCPAPRRPGRRDEEPLPATRRPLRIRARPPHARSGS---VPGGG 204 + P R P P++P R P P ++P R RPP RS + +PG G Sbjct: 436 QQPQRYATPQPQQPQRYAPPPAPEPQQPRR-EPRPPRQRSANPMRIPGLG 484
>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1| (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160) Length = 904 Score = 30.8 bits (68), Expect = 0.81 Identities = 22/65 (33%), Positives = 32/65 (49%), Gaps = 5/65 (7%) Frame = +1 Query: 1 R*TETVASDEPLIRNSKTLVSRSPHRSRCPAPRRPG-----RRDEEPLPATRRPLRIRAR 165 R T S +P R+S + R+P S P P R G +R + P P+T RP+R +R Sbjct: 668 RSTREARSPQPNKRHSPSPRPRAPQTSSSPPPVRRGASSSPQRRQSPSPST-RPIRRVSR 726 Query: 166 PPHAR 180 P + Sbjct: 727 TPEPK 731 Score = 29.6 bits (65), Expect = 1.8 Identities = 17/38 (44%), Positives = 19/38 (50%) Frame = +1 Query: 76 RSRCPAPRRPGRRDEEPLPATRRPLRIRARPPHARSGS 189 R R P+P P RR P P RR R + PP RS S Sbjct: 557 RRRSPSPAPPPRRRRTPTPPPRR--RTPSPPPRRRSPS 592 Score = 28.1 bits (61), Expect = 5.3 Identities = 22/59 (37%), Positives = 24/59 (40%) Frame = +1 Query: 19 ASDEPLIRNSKTLVSRSPHRSRCPAPRRPGRRDEEPLPATRRPLRIRARPPHARSGSVP 195 AS P R +T RS P P R RR P P RR R PP R+ S P Sbjct: 529 ASPSPRKRQKETSPRGRRRRSPSPPPTRR-RRSPSPAPPPRRR-RTPTPPPRRRTPSPP 585 Score = 27.3 bits (59), Expect = 9.0 Identities = 25/74 (33%), Positives = 28/74 (37%), Gaps = 12/74 (16%) Frame = +1 Query: 67 SPHRSRCPAPRRPG---------RRDEEPLPATRRPLRIRARPPHARSGSVPGGGRDHHT 219 SP RS P+PR+ RR P P RR A PP R P R T Sbjct: 524 SPSRSASPSPRKRQKETSPRGRRRRSPSPPPTRRRRSPSPAPPPRRRRTPTPPPRR--RT 581 Query: 220 GDPDAQAR---PRR 252 P + R PRR Sbjct: 582 PSPPPRRRSPSPRR 595
>K1849_HUMAN (Q96JH8) Protein KIAA1849| Length = 1073 Score = 30.8 bits (68), Expect = 0.81 Identities = 24/82 (29%), Positives = 33/82 (40%) Frame = +1 Query: 49 KTLVSRSPHRSRCPAPRRPGRRDEEPLPATRRPLRIRARPPHARSGSVPGGGRDHHTGDP 228 +TL R ++ P R+PGR + P PP G PG +G P Sbjct: 865 RTLPLRGAPWAQAPPGRQPGRGGSQAGPP-HTDSSCLLTPPSTPLGPEPGDPDWPESGGP 923 Query: 229 DAQARPRRLFLGVLALQPQAPE 294 +A P R G+ L+ APE Sbjct: 924 CGKALPERQRNGLSGLRGAAPE 945
>RSP7_CAEEL (O01159) Probable splicing factor, arginine/serine-rich 7 (p54)| Length = 452 Score = 30.4 bits (67), Expect = 1.1 Identities = 19/41 (46%), Positives = 22/41 (53%) Frame = +1 Query: 61 SRSPHRSRCPAPRRPGRRDEEPLPATRRPLRIRARPPHARS 183 SRSP R R P+PRR RRD R R R+R +RS Sbjct: 275 SRSPRRRRSPSPRR--RRDSRDRDRDRDRDRRRSRDRRSRS 313
>RSP4_CAEEL (Q09511) Probable splicing factor, arginine/serine-rich 4| (RNA-binding protein srp-2) (CeSC35) Length = 196 Score = 30.4 bits (67), Expect = 1.1 Identities = 23/70 (32%), Positives = 27/70 (38%), Gaps = 7/70 (10%) Frame = +1 Query: 61 SRSPHRSRCPAPRR-------PGRRDEEPLPATRRPLRIRARPPHARSGSVPGGGRDHHT 219 SRSP SR +PRR P RD P R R R+R P R P R Sbjct: 123 SRSPRYSRSRSPRRSRSRTRSPPSRDRRDSPDRRDNSRSRSRSPPPREDGSPKERRSRSR 182 Query: 220 GDPDAQARPR 249 + +R R Sbjct: 183 SASRSPSRSR 192
>IF2_PROAC (Q6A7M5) Translation initiation factor IF-2| Length = 964 Score = 30.4 bits (67), Expect = 1.1 Identities = 21/55 (38%), Positives = 25/55 (45%), Gaps = 4/55 (7%) Frame = +1 Query: 76 RSRCPAPR-RPGRRDEEPLPATR---RPLRIRARPPHARSGSVPGGGRDHHTGDP 228 + PAP+ +PG + P P R RP P AR G PG GR TG P Sbjct: 158 KPHAPAPKPKPGAPSKSPKPGARPGPRPGGSAGLPSAARPGPRPGAGR--RTGAP 210
>PDE3A_HUMAN (Q14432) cGMP-inhibited 3',5'-cyclic phosphodiesterase A (EC| 3.1.4.17) (Cyclic GMP-inhibited phosphodiesterase A) (CGI-PDE A) Length = 1141 Score = 30.4 bits (67), Expect = 1.1 Identities = 21/49 (42%), Positives = 24/49 (48%), Gaps = 5/49 (10%) Frame = +1 Query: 151 RIRARPPHARSGSVPGGGRD-HHTGDPDAQARPR----RLFLGVLALQP 282 R+R +P H+ P GRD HH DP A PR R G L LQP Sbjct: 9 RVRDKPVHSGVSQAPTAGRDCHHRADP---ASPRDSGCRGCWGDLVLQP 54
>SYNJ1_BOVIN (O18964) Synaptojanin-1 (EC 3.1.3.36) (Synaptic| inositol-1,4,5-trisphosphate 5-phosphatase 1) (p150) (Fragment) Length = 1324 Score = 30.0 bits (66), Expect = 1.4 Identities = 25/66 (37%), Positives = 26/66 (39%) Frame = +1 Query: 88 PAPRRPGRRDEEPLPATRRPLRIRARPPHARSGSVPGGGRDHHTGDPDAQARPRRLFLGV 267 P P RP P P R P P ARS P R+ AQ RPRR LG Sbjct: 1108 PPPPRPVAPPARPAPPQRPP-----PPSGARS---PAPARERVWSTRKAQERPRRDNLGG 1159 Query: 268 LALQPQ 285 L PQ Sbjct: 1160 SQLPPQ 1165
>TARA_HUMAN (Q9H2D6) TRIO and F-actin-binding protein (Protein Tara)| (Trio-associated repeat on actin) Length = 2365 Score = 30.0 bits (66), Expect = 1.4 Identities = 22/68 (32%), Positives = 28/68 (41%), Gaps = 2/68 (2%) Frame = -1 Query: 383 SEAPR*WSPLTSSPPGHRTLSA*PIPSRTCSGA*G*RARTPRKSRRGRACASGSPV*W-- 210 +E P WSP P G R L P+P RT + RT R G+A W Sbjct: 1371 AEPPHPWSP-EKRPEGDRQLQGSPLPPRTSARTPERELRTQRPLESGQAGPRQPLGVWQS 1429 Query: 209 SRPPPGTE 186 PPG++ Sbjct: 1430 QEEPPGSQ 1437
>BRD4_MOUSE (Q9ESU6) Bromodomain-containing protein 4 (Mitotic| chromosome-associated protein) (MCAP) Length = 1400 Score = 30.0 bits (66), Expect = 1.4 Identities = 21/77 (27%), Positives = 31/77 (40%) Frame = +1 Query: 88 PAPRRPGRRDEEPLPATRRPLRIRARPPHARSGSVPGGGRDHHTGDPDAQARPRRLFLGV 267 P P++P ++P P + + PP S+P T + P + V Sbjct: 753 PVPQQPPPPPQQPPPPPPPQQQQQQPPPPPPPPSMP-----QQTAPAMKSSPPPFITAQV 807 Query: 268 LALQPQAPEQVLDGIGH 318 L+PQ P V D IGH Sbjct: 808 PVLEPQLPGSVFDPIGH 824
>NPAS3_MOUSE (Q9QZQ0) Neuronal PAS domain protein 3 (Neuronal PAS3) (Member of| PAS protein 6) (MOP6) Length = 925 Score = 30.0 bits (66), Expect = 1.4 Identities = 17/51 (33%), Positives = 22/51 (43%) Frame = +1 Query: 94 PRRPGRRDEEPLPATRRPLRIRARPPHARSGSVPGGGRDHHTGDPDAQARP 246 P R R+E P T+ P P + GS+ GGG H PD+ P Sbjct: 673 PNREISRNESPYSMTKPPTSEHFPSPQGQGGSIGGGGA-LHVAIPDSVLTP 722
>VE2_HPV1A (P03118) Regulatory protein E2| Length = 401 Score = 29.6 bits (65), Expect = 1.8 Identities = 28/76 (36%), Positives = 33/76 (43%), Gaps = 4/76 (5%) Frame = +1 Query: 40 RNSKTLVSRSPH-RSRCPAPRRPGRRDEEPLPATRRPLRIRARPPHARSGSVPGG---GR 207 R KT V R P+ R R +PR GRR+ E P +R P GSVP G Sbjct: 249 RQQKTPVRRRPYGRRRSRSPRGGGRREGESTP-SRTP------------GSVPSARDVGS 295 Query: 208 DHHTGDPDAQARPRRL 255 H T +R RRL Sbjct: 296 IHTTPQKGHSSRLRRL 311
>IF2_NITWN (Q3SWP9) Translation initiation factor IF-2| Length = 871 Score = 29.6 bits (65), Expect = 1.8 Identities = 23/71 (32%), Positives = 31/71 (43%) Frame = +1 Query: 76 RSRCPAPRRPGRRDEEPLPATRRPLRIRARPPHARSGSVPGGGRDHHTGDPDAQARPRRL 255 ++ A RR G+ + +P PA RA PP AR +V G D P RP Sbjct: 167 KAEIEAKRRFGQTESKPAPAKTTTTTTRAAPP-ARPAAVAADGSDEDEA-PRLVRRPGGP 224 Query: 256 FLGVLALQPQA 288 V+A +P A Sbjct: 225 ARPVIAPKPAA 235
>XYLT1_PANTR (Q5QQ57) Xylosyltransferase 1 (EC 2.4.2.26) (Xylosyltransferase I)| (Peptide O-xylosyltransferase 1) Length = 945 Score = 29.6 bits (65), Expect = 1.8 Identities = 19/43 (44%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Frame = +1 Query: 118 EEPLPATRRPLR-IRARPPHARSGSVPGGGRDHHTGDPDAQAR 243 E+P PA RR R + A P AR G GGG P A+AR Sbjct: 55 EQPPPAPRRERRDLPAEPAAARGGGGGGGGCGGGGRGPQARAR 97
>HMDH_GIBFU (Q12577) 3-hydroxy-3-methylglutaryl-coenzyme A reductase (EC| 1.1.1.34) (HMG-CoA reductase) Length = 976 Score = 29.3 bits (64), Expect = 2.4 Identities = 24/77 (31%), Positives = 32/77 (41%), Gaps = 2/77 (2%) Frame = -3 Query: 363 ESLDFEPTRSSNSVRMTDSVQNLLWGLRLKSENTEEEPPGPSLRVRVPGVMVSAASGDGT 184 E L R +N ++ L E T+EE S+R ++PG + GD T Sbjct: 484 EGLHMTKARPANLPNRSNEELEKLLSENALREMTDEEVISLSMRGKIPGYALEKTLGDFT 543 Query: 183 RASMRRTS--ADTKGAA 139 RA R S A K AA Sbjct: 544 RAVKIRRSIIARNKAAA 560
>FOG1_MOUSE (O35615) Zinc finger protein ZFPM1 (Zinc finger protein multitype| 1) (Friend of GATA protein 1) (Friend of GATA-1) (FOG-1) Length = 995 Score = 29.3 bits (64), Expect = 2.4 Identities = 16/57 (28%), Positives = 23/57 (40%), Gaps = 2/57 (3%) Frame = +1 Query: 40 RNSKTLVSRSPHRSRCPAPRRPGRR--DEEPLPATRRPLRIRARPPHARSGSVPGGG 204 R K + P +R P PG + P P + P+R++ GS PG G Sbjct: 466 RTIKVEAAEEPEATRASGPGEPGPQAPSRTPSPHSPNPVRVKTELSSPTPGSSPGPG 522
>SFRS1_ARATH (O22315) Pre-mRNA-splicing factor SF2 (SR1 protein)| Length = 303 Score = 29.3 bits (64), Expect = 2.4 Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 3/38 (7%) Frame = +1 Query: 40 RNSKTLVSRSP---HRSRCPAPRRPGRRDEEPLPATRR 144 R+ SRSP +SR P+PRR R PLP+ ++ Sbjct: 243 RSPAKSTSRSPGPRSKSRSPSPRRSRSRSRSPLPSVQK 280
>CD2A2_HUMAN (Q8N726) Cyclin-dependent kinase inhibitor 2A, isoform 4 (p14ARF)| (p19ARF) Length = 173 Score = 29.3 bits (64), Expect = 2.4 Identities = 29/85 (34%), Positives = 37/85 (43%), Gaps = 9/85 (10%) Frame = +1 Query: 55 LVSRSPHRSRCPAPRRPGRRDEE-----PLPATRRPLRIRARPPHA---RSGSVPGGGRD 210 ++ RS + P PRRPG D + A RR ++R RP H+ R+ PGG Sbjct: 89 MLLRSQRLGQQPLPRRPGHDDGQRPSGGAAAAPRRGAQLR-RPRHSHPTRARRCPGGLPG 147 Query: 211 HHTG-DPDAQARPRRLFLGVLALQP 282 H G P A R LG A P Sbjct: 148 HAGGAAPGRGAAGRARCLGPSARGP 172
>KIF1C_HUMAN (O43896) Kinesin-like protein KIF1C| Length = 1103 Score = 29.3 bits (64), Expect = 2.4 Identities = 26/71 (36%), Positives = 31/71 (43%), Gaps = 2/71 (2%) Frame = +1 Query: 88 PAPRRPGRRDEEPLPAT--RRPLRIRARPPHARSGSVPGGGRDHHTGDPDAQARPRRLFL 261 P P +P + P PAT RRP R R H R S+ GGGR G AQ P+ Sbjct: 1000 PTPLQPPE-EVTPHPATPARRPPSPR-RSHHPRRNSLDGGGRSRGAG--SAQPEPQHFQP 1055 Query: 262 GVLALQPQAPE 294 PQ P+ Sbjct: 1056 KKHNSYPQPPQ 1066
>BRD4_HUMAN (O60885) Bromodomain-containing protein 4 (HUNK1 protein)| Length = 1362 Score = 28.9 bits (63), Expect = 3.1 Identities = 22/77 (28%), Positives = 31/77 (40%) Frame = +1 Query: 88 PAPRRPGRRDEEPLPATRRPLRIRARPPHARSGSVPGGGRDHHTGDPDAQARPRRLFLGV 267 P P++P ++P P P + + PP S+P P P + V Sbjct: 752 PVPQQPPPPPQQP-PPPPPPQQQQQPPPPPPPPSMPQQAAPAMKSSP-----PPFIATQV 805 Query: 268 LALQPQAPEQVLDGIGH 318 L+PQ P V D IGH Sbjct: 806 PVLEPQLPGSVFDPIGH 822
>YA4E_SCHPO (Q09731) Hypothetical WD-repeat protein C31A2.14 in chromosome I| Length = 962 Score = 28.9 bits (63), Expect = 3.1 Identities = 14/37 (37%), Positives = 20/37 (54%) Frame = +1 Query: 58 VSRSPHRSRCPAPRRPGRRDEEPLPATRRPLRIRARP 168 V RS + + A R R+ +P+ PLRIR+RP Sbjct: 540 VVRSEAKKQIEAQREEARKGNVNMPSALSPLRIRSRP 576
>GCS1_RAT (O88941) Mannosyl-oligosaccharide glucosidase (EC 3.2.1.106)| (Glycoprotein-processing glucosidase I) Length = 834 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/27 (59%), Positives = 16/27 (59%) Frame = -2 Query: 268 EHRGRAAGAELARPGPRCDGLGRLRGR 188 E R RAA AE ARP R G GR GR Sbjct: 5 ERRRRAAAAEGARPLERARGAGRRDGR 31
>RPOA_PRRSB (Q8B912) Replicase polyprotein 1ab (ORF1ab polyprotein) [Includes:| Replicase polyprotein 1a (ORF1a)] [Contains: Nsp1-alpha papain-like cysteine proteinase (EC 3.4.22.-) (PCP1-alpha); Nsp1-beta papain-like cysteine proteinase (EC 3.4.22.-) (PCP Length = 3963 Score = 28.9 bits (63), Expect = 3.1 Identities = 13/38 (34%), Positives = 19/38 (50%) Frame = +1 Query: 115 DEEPLPATRRPLRIRARPPHARSGSVPGGGRDHHTGDP 228 +++P+PA RR +R P +VP G D G P Sbjct: 832 EDKPVPAPRRKVRSGCGSPVLMGDNVPNGSEDLTVGGP 869
>VGLE_CHV1 (P30816) Glycoprotein E homolog (Fragment)| Length = 64 Score = 28.9 bits (63), Expect = 3.1 Identities = 18/46 (39%), Positives = 19/46 (41%) Frame = +1 Query: 106 GRRDEEPLPATRRPLRIRARPPHARSGSVPGGGRDHHTGDPDAQAR 243 G RDE + R R R RPP GS GR G A AR Sbjct: 11 GDRDESEYDSDRIASRARIRPPSEAPGSRSSPGRRRTRGHRGAAAR 56
>PTPRN_BOVIN (P56722) Receptor-type tyrosine-protein phosphatase-like N| precursor (R-PTP-N) (Islet cell autoantigen 512) (ICA512) Length = 979 Score = 28.9 bits (63), Expect = 3.1 Identities = 29/98 (29%), Positives = 36/98 (36%), Gaps = 4/98 (4%) Frame = +1 Query: 103 PGRRDEEPLPATRRPLRIRARPPHARSGSVPGGGRDHHTGDPDAQARPRRLF----LGVL 270 PG +PLP P + G+ PG H GDP P +LF L L Sbjct: 227 PGMVSVDPLPKAEAPAFLSRAGSKGMFGAHPG----HSYGDPPGPP-PAQLFQESELFYL 281 Query: 271 ALQPQAPEQVLDGIGHADRVR*PGGLEVKGLHQRGASE 384 A + Q P + A R+ PGG G G E Sbjct: 282 AQESQVPSRT-----RAPRLPEPGGSSRAGDSSEGYEE 314
>FA47A_HUMAN (Q5JRC9) Protein FAM47A| Length = 778 Score = 28.9 bits (63), Expect = 3.1 Identities = 21/57 (36%), Positives = 27/57 (47%) Frame = +1 Query: 28 EPLIRNSKTLVSRSPHRSRCPAPRRPGRRDEEPLPATRRPLRIRARPPHARSGSVPG 198 EP ++ +T VS PH P RR +P P TRR +R+ PP R S G Sbjct: 465 EPCLQPPETQVSH-PHPEH-PKTRRRSSLHSQP-PKTRRTSSLRSEPPKTRRTSSLG 518
>CABP4_BOVIN (Q8HZJ4) Calcium-binding protein 4 (CaBP4)| Length = 279 Score = 28.9 bits (63), Expect = 3.1 Identities = 18/44 (40%), Positives = 24/44 (54%), Gaps = 2/44 (4%) Frame = -3 Query: 249 PGPSLRVRVPGVMVSAASG--DGTRASMRRTSADTKGAAGSRKG 124 P P+ R + P V V A+S +G +R+S KG GSRKG Sbjct: 12 PDPAPRPQKPPVEVLASSSGAEGPPLMRKRSSKREKGLRGSRKG 55
>Y1318_MYCBO (P67160) Putative HTH-type transcriptional regulator Mb1318| Length = 161 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/16 (75%), Positives = 12/16 (75%) Frame = -2 Query: 271 REHRGRAAGAELARPG 224 R HRGR G ELARPG Sbjct: 56 RSHRGREGGYELARPG 71
>Y1287_MYCTU (P67159) Putative HTH-type transcriptional regulator Rv1287/MT1325| Length = 161 Score = 28.9 bits (63), Expect = 3.1 Identities = 12/16 (75%), Positives = 12/16 (75%) Frame = -2 Query: 271 REHRGRAAGAELARPG 224 R HRGR G ELARPG Sbjct: 56 RSHRGREGGYELARPG 71
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 28.9 bits (63), Expect = 3.1 Identities = 18/48 (37%), Positives = 19/48 (39%) Frame = +1 Query: 64 RSPHRSRCPAPRRPGRRDEEPLPATRRPLRIRARPPHARSGSVPGGGR 207 R RSR +PRR P P R P R PP R PG R Sbjct: 299 RHRSRSRSYSPRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRSPGRRR 346
>SREC2_HUMAN (Q96GP6) Scavenger receptor class F member 2 precursor (Scavenger| receptor expressed by endothelial cells 2 protein) (SREC-II) (SRECRP-1) Length = 866 Score = 28.9 bits (63), Expect = 3.1 Identities = 18/45 (40%), Positives = 24/45 (53%) Frame = +1 Query: 31 PLIRNSKTLVSRSPHRSRCPAPRRPGRRDEEPLPATRRPLRIRAR 165 P +++ T+ SP R+R P PR PG +E A P R RAR Sbjct: 701 PSDKSAHTVEHGSP-RTRDPTPRPPGLPEEATALAAPSPPRARAR 744
>MMP16_RAT (O35548) Matrix metalloproteinase-16 precursor (EC 3.4.24.-)| (MMP-16) (Membrane-type matrix metalloproteinase 3) (MT-MMP 3) (MTMMP3) (Membrane-type-3 matrix metalloproteinase) (MT3-MMP) (MT3MMP) Length = 607 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/41 (39%), Positives = 21/41 (51%) Frame = +1 Query: 46 SKTLVSRSPHRSRCPAPRRPGRRDEEPLPATRRPLRIRARP 168 ++ L + PHRS PA R R + P P T RP A+P Sbjct: 300 TRPLPTVPPHRSVPPADPRKNDRPKPPRPPTGRPSYPGAKP 340
>MMP16_HUMAN (P51512) Matrix metalloproteinase-16 precursor (EC 3.4.24.-)| (MMP-16) (Membrane-type matrix metalloproteinase 3) (MT-MMP 3) (MTMMP3) (Membrane-type-3 matrix metalloproteinase) (MT3-MMP) (MT3MMP) (MMP-X2) Length = 607 Score = 28.9 bits (63), Expect = 3.1 Identities = 16/41 (39%), Positives = 21/41 (51%) Frame = +1 Query: 46 SKTLVSRSPHRSRCPAPRRPGRRDEEPLPATRRPLRIRARP 168 ++ L + PHRS PA R R + P P T RP A+P Sbjct: 300 TRPLPTVPPHRSIPPADPRKNDRPKPPRPPTGRPSYPGAKP 340
>PDLI7_HUMAN (Q9NR12) PDZ and LIM domain protein 7 (LIM mineralization protein)| (LMP) (Protein enigma) Length = 457 Score = 28.5 bits (62), Expect = 4.0 Identities = 13/28 (46%), Positives = 17/28 (60%) Frame = +1 Query: 130 PATRRPLRIRARPPHARSGSVPGGGRDH 213 PAT PL+ R A +G VPGGG ++ Sbjct: 249 PATPTPLQSRTSIVQAAAGGVPGGGSNN 276
>GLSA_COREF (Q8FMX4) Glutaminase (EC 3.5.1.2)| Length = 423 Score = 28.5 bits (62), Expect = 4.0 Identities = 16/44 (36%), Positives = 22/44 (50%) Frame = +1 Query: 184 GSVPGGGRDHHTGDPDAQARPRRLFLGVLALQPQAPEQVLDGIG 315 G + G G D H + ++P F LALQ Q PE+V +G Sbjct: 53 GHIYGAGDDEHEFTMQSVSKP---FAYALALQEQGPEKVFATVG 93
>CBLB_XENTR (Q6DFR2) E3 ubiquitin-protein ligase CBL-B (EC 6.3.2.-) (Signal| transduction protein CBL-B) (SH3-binding protein CBL-B) Length = 982 Score = 28.5 bits (62), Expect = 4.0 Identities = 21/61 (34%), Positives = 29/61 (47%), Gaps = 7/61 (11%) Frame = +1 Query: 58 VSRSPHRSRCPAPRRPG---RRDEEPLPATRRPLRIRARPPHARSGSVPGGGRD----HH 216 ++RSP S +P+ R+ ++PLPA PLR PP R +P R HH Sbjct: 528 LARSPCASPTGSPKSSPCMVRKQDKPLPAPPPPLR-EPPPPPERPPPIPPDSRTCRHLHH 586 Query: 217 T 219 T Sbjct: 587 T 587
>CBLB_HUMAN (Q13191) E3 ubiquitin-protein ligase CBL-B (EC 6.3.2.-) (Signal| transduction protein CBL-B) (SH3-binding protein CBL-B) (Casitas B-lineage lymphoma proto-oncogene b) (RING finger protein 56) Length = 982 Score = 28.5 bits (62), Expect = 4.0 Identities = 18/53 (33%), Positives = 25/53 (47%), Gaps = 3/53 (5%) Frame = +1 Query: 58 VSRSPHRSRCPAPRRPG---RRDEEPLPATRRPLRIRARPPHARSGSVPGGGR 207 + RSP S +P+ R+ ++PLPA PLR PP R +P R Sbjct: 518 IVRSPCGSPTGSPKSSPCMVRKQDKPLPAPPPPLRDPPPPPPERPPPIPPDNR 570
>WASIP_HUMAN (O43516) Wiskott-Aldrich syndrome protein-interacting protein| (WASP-interacting protein) (PRPL-2 protein) Length = 503 Score = 28.5 bits (62), Expect = 4.0 Identities = 16/44 (36%), Positives = 21/44 (47%) Frame = +1 Query: 67 SPHRSRCPAPRRPGRRDEEPLPATRRPLRIRARPPHARSGSVPG 198 S HR P P P + ++ P+P+T RP PP S PG Sbjct: 276 SIHREAVPPP--PPQNNKPPVPSTPRPSASSQAPPPPPPPSRPG 317 Score = 27.7 bits (60), Expect = 6.9 Identities = 18/53 (33%), Positives = 23/53 (43%), Gaps = 2/53 (3%) Frame = +1 Query: 70 PHRSRCPAPRRP--GRRDEEPLPATRRPLRIRARPPHARSGSVPGGGRDHHTG 222 P R+R P PR + D P P P I++ + S VPGG R G Sbjct: 164 PQRNRMPPPRPDVGSKPDSIPPPVPSTPRPIQSSLHNRGSPPVPGGPRQPSPG 216
>INO80_ASPFU (Q4WTV7) Putative DNA helicase ino80 (EC 3.6.1.-)| Length = 1708 Score = 28.5 bits (62), Expect = 4.0 Identities = 17/38 (44%), Positives = 19/38 (50%) Frame = +1 Query: 58 VSRSPHRSRCPAPRRPGRRDEEPLPATRRPLRIRARPP 171 +SRSPH S P+ PLPAT PL A PP Sbjct: 54 LSRSPHYSHAPS----------PLPATLPPLNGGAPPP 81
>SNUT3_HUMAN (Q8WVK2) U4/U6.U5 tri-snRNP-associated protein 3 (U4/U6.U5| tri-snRNP-associated 27 kDa protein) (27K) (Nucleic acid-binding protein RY-1) Length = 155 Score = 28.5 bits (62), Expect = 4.0 Identities = 22/60 (36%), Positives = 25/60 (41%), Gaps = 4/60 (6%) Frame = +1 Query: 61 SRSPHR----SRCPAPRRPGRRDEEPLPATRRPLRIRARPPHARSGSVPGGGRDHHTGDP 228 SRSP R SR + R RR E R R R+R PH R P R H + P Sbjct: 6 SRSPRRERRRSRSTSRERERRRRERSRSRERDRRRSRSRSPHRRRSRSP---RRHRSTSP 62
>XYLT1_HUMAN (Q86Y38) Xylosyltransferase 1 (EC 2.4.2.26) (Xylosyltransferase I)| (XylT-I) (XT-I) (Peptide O-xylosyltransferase 1) Length = 959 Score = 28.1 bits (61), Expect = 5.3 Identities = 20/47 (42%), Positives = 22/47 (46%), Gaps = 1/47 (2%) Frame = +1 Query: 106 GRRDEEPLPATRRPLR-IRARPPHARSGSVPGGGRDHHTGDPDAQAR 243 G P PA RR R + A P AR G GGG G P A+AR Sbjct: 53 GGEQPPPAPAPRRERRDLPAEPAAARGGGGGGGGGGGGRG-PQARAR 98
>CWC22_MAGGR (Q52B63) Pre-mRNA-splicing factor CWC22| Length = 907 Score = 28.1 bits (61), Expect = 5.3 Identities = 20/52 (38%), Positives = 30/52 (57%) Frame = +1 Query: 43 NSKTLVSRSPHRSRCPAPRRPGRRDEEPLPATRRPLRIRARPPHARSGSVPG 198 ++++ +SRSP SR P+PRR RRD +R P+R R A + + PG Sbjct: 815 DNRSPLSRSPSGSRSPSPRR--RRDS----PSRSPVRDRESGGRA-AAAAPG 859
>PTN23_HUMAN (Q9H3S7) Tyrosine-protein phosphatase non-receptor type 23 (EC| 3.1.3.48) (His-domain-containing protein tyrosine phosphatase) (HD-PTP) (Protein tyrosine phosphatase TD14) (PTP-TD14) Length = 1636 Score = 28.1 bits (61), Expect = 5.3 Identities = 14/46 (30%), Positives = 21/46 (45%) Frame = +1 Query: 49 KTLVSRSPHRSRCPAPRRPGRRDEEPLPATRRPLRIRARPPHARSG 186 + L + P R P P P R + E + A P +R+ PP +G Sbjct: 710 RELKKKPPPRPTAPKPLLPRREESEAVEAGDPPEELRSLPPDMVAG 755
>RNE_SYNY3 (P72656) Ribonuclease E homolog (EC 3.1.4.-) (RNase E)| Length = 674 Score = 28.1 bits (61), Expect = 5.3 Identities = 16/44 (36%), Positives = 23/44 (52%), Gaps = 4/44 (9%) Frame = -2 Query: 316 DRFRPELA----LGLEVEEREHRGRAAGAELARPGPRCDGLGRL 197 D+ RP++A LGL R+ +G+ +P P C GLG L Sbjct: 363 DKARPQIAQLTELGLVELTRKRQGQNLYELFGQPCPECGGLGHL 406
>SRRM1_CHICK (Q5ZMJ9) Serine/arginine repetitive matrix protein 1| Length = 888 Score = 28.1 bits (61), Expect = 5.3 Identities = 22/55 (40%), Positives = 23/55 (41%), Gaps = 12/55 (21%) Frame = +1 Query: 61 SRSPHRSRCPAPRRPGRRDEE-----------PLPATRRPLRIRARPP-HARSGS 189 SRS RSR P+ RP RR P P R P R PP H RS S Sbjct: 285 SRSRSRSRSPSHSRPRRRHRSRSRRRPSPRRRPSPRRRTPPRRMPPPPRHRRSRS 339 Score = 27.3 bits (59), Expect = 9.0 Identities = 24/67 (35%), Positives = 28/67 (41%), Gaps = 5/67 (7%) Frame = +1 Query: 61 SRSPH-----RSRCPAPRRPGRRDEEPLPATRRPLRIRARPPHARSGSVPGGGRDHHTGD 225 SRSP R + P+PRR RR P PA RR R + PP R P R Sbjct: 521 SRSPSPSPRKRQKEPSPRR-RRRSPSPPPARRR--RSPSPPPPPRRRRSPSLPRRRSPSP 577 Query: 226 PDAQARP 246 P + P Sbjct: 578 PPRRRSP 584
>OST6_MOUSE (Q5GFD5) Heparan sulfate glucosamine 3-O-sulfotransferase 6 (EC| 2.8.2.23) (Heparan sulfate D-glucosaminyl 3-O-sulfotransferase 6) (Heparan sulfate 3-O-sulfotransferase 6) (3-OST-6) Length = 342 Score = 28.1 bits (61), Expect = 5.3 Identities = 15/25 (60%), Positives = 17/25 (68%) Frame = -3 Query: 255 EPPGPSLRVRVPGVMVSAASGDGTR 181 EPP SLR+R PG+ V ASG G R Sbjct: 66 EPPHTSLRLRAPGLPV--ASGPGRR 88
>CSKP_MOUSE (O70589) Peripheral plasma membrane protein CASK (EC 2.7.11.1)| (Calcium/calmodulin-dependent serine protein kinase) Length = 924 Score = 28.1 bits (61), Expect = 5.3 Identities = 12/26 (46%), Positives = 17/26 (65%), Gaps = 2/26 (7%) Frame = +1 Query: 52 TLVSRSPHRSRCPAPR--RPGRRDEE 123 TL+++ P R CP P RP ++DEE Sbjct: 757 TLITKHPDRFACPIPHTTRPPKKDEE 782
>CWC21_USTMA (Q4P0G6) Pre-mRNA-splicing factor CWC21| Length = 348 Score = 28.1 bits (61), Expect = 5.3 Identities = 17/45 (37%), Positives = 22/45 (48%) Frame = +1 Query: 37 IRNSKTLVSRSPHRSRCPAPRRPGRRDEEPLPATRRPLRIRARPP 171 + +S++ SRSP RSR P+ R R P RR R PP Sbjct: 295 LSHSRSSRSRSPSRSRSPS-RCASSRSRSPAHRPRRHSSSRVNPP 338
>SPEG_HUMAN (Q15772) Striated muscle preferentially expressed protein kinase| (EC 2.7.11.1) (Aortic preferentially expressed protein 1) (APEG-1) Length = 3223 Score = 28.1 bits (61), Expect = 5.3 Identities = 25/81 (30%), Positives = 35/81 (43%), Gaps = 6/81 (7%) Frame = +1 Query: 22 SDEPLIRNSKTLVSRSPHRSRCPAPRRPGRRDEEPLPATRRPLR----IRARPPHARSGS 189 S E L+R+ ++L + R P+PR PG P+T + R A+PP S Sbjct: 506 SREELVRSHESLRATL---QRAPSPREPGEPPLFSRPSTPKTSRAVSPAAAQPPSPSSAE 562 Query: 190 VPGG--GRDHHTGDPDAQARP 246 PG GR G P + P Sbjct: 563 KPGDEPGRPRSRG-PAGRTEP 582
>PG20_MYCTU (O53416) Hypothetical PE-PGRS family protein PE_PGRS20| Length = 463 Score = 23.5 bits (49), Expect(2) = 6.8 Identities = 13/41 (31%), Positives = 15/41 (36%) Frame = -3 Query: 246 GPSLRVRVPGVMVSAASGDGTRASMRRTSADTKGAAGSRKG 124 GP+ + PGV A GT A G AG G Sbjct: 198 GPAGAIGAPGVAGGAGGAGGTAGLFGNGGAGGAGGAGGAGG 238 Score = 22.7 bits (47), Expect(2) = 6.8 Identities = 13/33 (39%), Positives = 15/33 (45%), Gaps = 5/33 (15%) Frame = -2 Query: 115 LAGRGAAAPDSGCGGETGRRG-----FWNSGSG 32 L+G G A G GG G G W SG+G Sbjct: 249 LSGNGGDAGTGGGGGNAGNGGNGGSAGWLSGNG 281
>MA1C1_HUMAN (Q9NR34) Mannosyl-oligosaccharide 1,2-alpha-mannosidase IC (EC| 3.2.1.113) (Processing alpha-1,2-mannosidase IC) (Alpha-1,2-mannosidase IC) (Mannosidase alpha class 1C member 1) (HMIC) Length = 630 Score = 27.7 bits (60), Expect = 6.9 Identities = 24/82 (29%), Positives = 35/82 (42%), Gaps = 6/82 (7%) Frame = +1 Query: 70 PHRSR------CPAPRRPGRRDEEPLPATRRPLRIRARPPHARSGSVPGGGRDHHTGDPD 231 PH SR P ++PG + A P R + PP+ + + P G D DP Sbjct: 44 PHSSRLKRLFLAPRTQQPGLEVVAEI-AGHAPAREQEPPPNP-APAAPAPGED----DPS 97 Query: 232 AQARPRRLFLGVLALQPQAPEQ 297 + A PRR G+ +P P + Sbjct: 98 SWASPRRRKGGLRRTRPTGPRE 119
>CBLBB_XENLA (Q6NRE7) E3 ubiquitin-protein ligase CBL-B-B (EC 6.3.2.-) (Signal| transduction protein CBL-B-B) (SH3-binding protein CBL-B-B) Length = 764 Score = 27.7 bits (60), Expect = 6.9 Identities = 19/58 (32%), Positives = 25/58 (43%), Gaps = 7/58 (12%) Frame = +1 Query: 55 LVSRSPHRSRCPAPRRP-------GRRDEEPLPATRRPLRIRARPPHARSGSVPGGGR 207 L+ R RS C +P R+ ++PLPA PLR PP R +P R Sbjct: 525 LIQRGLARSPCASPTGSPKSSPCMARKQDKPLPAPPPPLR-EPPPPPERPPPIPPDSR 581
>FZD8_HUMAN (Q9H461) Frizzled 8 precursor (Frizzled-8) (Fz-8) (hFz8)| Length = 694 Score = 27.7 bits (60), Expect = 6.9 Identities = 25/71 (35%), Positives = 28/71 (39%) Frame = +1 Query: 40 RNSKTLVSRSPHRSRCPAPRRPGRRDEEPLPATRRPLRIRARPPHARSGSVPGGGRDHHT 219 R T + SP R P P PG E+P + ARPPH G GGG Sbjct: 153 RTDLTTAAPSPPRRLPPPP--PG---EQPPSGSGHGRPPGARPPHRGGGRGGGGG----- 202 Query: 220 GDPDAQARPRR 252 DA A P R Sbjct: 203 ---DAAAPPAR 210
>CXCC1_MOUSE (Q9CWW7) CpG-binding protein (PHD finger and CXXC domain-containing| protein 1) (CXXC finger protein 1) Length = 660 Score = 27.7 bits (60), Expect = 6.9 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 4/48 (8%) Frame = +1 Query: 112 RDEEP-LPATRRPLRIRARPPHARSGSVP---GGGRDHHTGDPDAQAR 243 R+++P L R + R R R+GS P GGGR DP+ Q R Sbjct: 74 REKDPKLEIRYRHKKCRERDGSERAGSEPRDEGGGRKRPASDPELQRR 121
>CAC1A_RAT (P54282) Voltage-dependent P/Q-type calcium channel alpha-1A subunit| (Voltage-gated calcium channel alpha subunit Cav2.1) (Calcium channel, L type, alpha-1 polypeptide, isoform 4) (Brain calcium channel I) (BI) (RAT brain class A) (RBA-I) Length = 2212 Score = 27.7 bits (60), Expect = 6.9 Identities = 32/110 (29%), Positives = 39/110 (35%), Gaps = 34/110 (30%) Frame = +1 Query: 25 DEPLI------RNSKTLVSRSPHRSRCPA-------------------PRRPGR-----R 114 D PL+ RN+ T SR+P R A R PGR R Sbjct: 821 DRPLVVDPQENRNNNTNKSRAPEALRQTARPRESARDPDARRAWPSSPERAPGREGPYGR 880 Query: 115 DEEPLPATRRPLRIR----ARPPHARSGSVPGGGRDHHTGDPDAQARPRR 252 + EP P R A P A++G P HT P A+ PRR Sbjct: 881 ESEPQQREHAPPREHVPWDADPERAKAGDAP----RRHTHRPVAEGEPRR 926
>AMER1_MOUSE (Q9JHT5) AMME syndrome candidate gene 1 protein homolog| Length = 344 Score = 27.7 bits (60), Expect = 6.9 Identities = 26/86 (30%), Positives = 30/86 (34%) Frame = -2 Query: 268 EHRGRAAGAELARPGPRCDGLGRLRGRNQSXXXXXXXXXXXXXXXXXGAPHLAGRGAAAP 89 E + RA L G R +GLG L G S G +P Sbjct: 36 ESQCRAGELGLGGAGTRLNGLGGLSGGGGSGG--------------------GGGCPLSP 75 Query: 88 DSGCGGETGRRGFWNSGSGVRRLLLS 11 GCGG G G SGSG + LS Sbjct: 76 PQGCGGGGGGGGGGGSGSGGGGISLS 101
>SVS2_RAT (P22006) Seminal vesicle secretory protein 2 precursor (Seminal| vesicle secretory protein II) (SVS II) Length = 414 Score = 27.7 bits (60), Expect = 6.9 Identities = 23/72 (31%), Positives = 34/72 (47%) Frame = -3 Query: 339 RSSNSVRMTDSVQNLLWGLRLKSENTEEEPPGPSLRVRVPGVMVSAASGDGTRASMRRTS 160 +SS+S M +L +GL+ SE EE S+ ++ M GD + S+ + Sbjct: 32 QSSSSGFMLGQKGHLNFGLKGGSEEAAEE----SIFMQSQHQMFGQDGGDMAQTSVSQEH 87 Query: 159 ADTKGAAGSRKG 124 KGAA RKG Sbjct: 88 TGVKGAAICRKG 99
>MYT1L_RAT (P70475) Myelin transcription factor 1-like protein (MyT1L protein)| (Neural zinc finger factor 1) (NZF-1) Length = 1187 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/45 (28%), Positives = 22/45 (48%), Gaps = 10/45 (22%) Frame = -2 Query: 292 LGLEVEEREHRGRAAGAEL----------ARPGPRCDGLGRLRGR 188 + ++ EE+ HR R+ G + + P P CDG G + G+ Sbjct: 1 MDVDAEEKRHRTRSKGVRVPVEPAIQELFSCPTPGCDGTGHVSGK 45
>MYSC_ACACA (P10569) Myosin IC heavy chain| Length = 1168 Score = 27.7 bits (60), Expect = 6.9 Identities = 18/47 (38%), Positives = 18/47 (38%) Frame = +1 Query: 88 PAPRRPGRRDEEPLPATRRPLRIRARPPHARSGSVPGGGRDHHTGDP 228 PAP PGR P P RA PP R PGG G P Sbjct: 1074 PAPGGPGRGGAPP------PGAGRAGPPGGRGMPAPGGAAPRGRGAP 1114
>DPHB_AERPE (Q9YDI2) Probable diphthine synthase (EC 2.1.1.98) (Diphthamide| biosynthesis methyltransferase) Length = 294 Score = 27.7 bits (60), Expect = 6.9 Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 5/46 (10%) Frame = -3 Query: 255 EPPGPSLRVRVPGVMVSAASGDGTR----ASMRRTS-ADTKGAAGS 133 E P+L R+P V+V A +G G R +S+ R S AD +G S Sbjct: 201 EAGAPALLARLPSVLVEAGAGGGHRVLYWSSLERLSTADVEGGVYS 246
>CWC22_USTMA (Q4PCY0) Pre-mRNA-splicing factor CWC22| Length = 886 Score = 27.7 bits (60), Expect = 6.9 Identities = 13/24 (54%), Positives = 16/24 (66%) Frame = +1 Query: 43 NSKTLVSRSPHRSRCPAPRRPGRR 114 +S++ SRSP RSR P PR RR Sbjct: 42 SSRSTSSRSPSRSRSPPPRSRRRR 65
>CUTI_PHYCP (P41754) Putative cutinase (EC 3.1.1.74) (Cutin hydrolase)| Length = 210 Score = 27.7 bits (60), Expect = 6.9 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 5/51 (9%) Frame = -1 Query: 359 PLTSSPPGHRTLSA*PIPSRTCSG-----A*G*RARTPRKSRRGRACASGS 222 PL PG R++ + IPS CS A R R+ R+ + G A AS S Sbjct: 31 PLKRDEPGSRSMRSTFIPSSQCSNLSSATASSSRRRSCRRYQHGEAVASSS 81
>RAI1_MOUSE (Q61818) Retinoic acid-induced protein 1| Length = 1889 Score = 27.7 bits (60), Expect = 6.9 Identities = 18/61 (29%), Positives = 28/61 (45%) Frame = +1 Query: 103 PGRRDEEPLPATRRPLRIRARPPHARSGSVPGGGRDHHTGDPDAQARPRRLFLGVLALQP 282 P + E P +PL + PH R+ S GGG D+ +G +P+ LG + P Sbjct: 1427 PSKGPLEKRPCPGQPLLLA---PHDRASSTQGGGEDNSSG---GGKKPKTEELGPASQPP 1480 Query: 283 Q 285 + Sbjct: 1481 E 1481
>INHA_HUMAN (P05111) Inhibin alpha chain precursor| Length = 366 Score = 27.7 bits (60), Expect = 6.9 Identities = 19/53 (35%), Positives = 22/53 (41%), Gaps = 3/53 (5%) Frame = +1 Query: 172 HARSGSVPGGGRDHHTG---DPDAQARPRRLFLGVLALQPQAPEQVLDGIGHA 321 H RS V HTG A + LG+LAL P P V +GHA Sbjct: 120 HTRSRQVTSAQLWFHTGLDRQGTAASNSSEPLLGLLALSPGGPVAVPMSLGHA 172
>SNUT3_MOUSE (Q8K194) U4/U6.U5 tri-snRNP-associated protein 3| Length = 155 Score = 27.7 bits (60), Expect = 6.9 Identities = 22/60 (36%), Positives = 25/60 (41%), Gaps = 4/60 (6%) Frame = +1 Query: 61 SRSPHR----SRCPAPRRPGRRDEEPLPATRRPLRIRARPPHARSGSVPGGGRDHHTGDP 228 SRSP R SR + R RR E R R R+R PH R P R H + P Sbjct: 6 SRSPRRERRRSRSTSRDRERRRRERSRSRERDRRRSRSRSPHRRRSRSP---RRHRSTSP 62
>VASHL_MOUSE (Q8C5G2) Vasohibin-like protein| Length = 355 Score = 27.7 bits (60), Expect = 6.9 Identities = 12/22 (54%), Positives = 14/22 (63%) Frame = +1 Query: 61 SRSPHRSRCPAPRRPGRRDEEP 126 S SP R + PRR GRRD+ P Sbjct: 312 SLSPRRRQASPPRRLGRRDKSP 333
>TBP_THECE (Q56253) TATA-box-binding protein (TATA-box factor) (TATA| sequence-binding protein) (TBP) (Box A-binding protein) (BAP) Length = 189 Score = 27.7 bits (60), Expect = 6.9 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = -2 Query: 352 LRAHQVIELCPHDRFRPE 299 L +VIE+CPH ++ PE Sbjct: 21 LNLERVIEMCPHSKYNPE 38
>RS3_BURS3 (Q39KG1) 30S ribosomal protein S3| Length = 266 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%) Frame = +1 Query: 22 SDEPLIRNSKTLVSRSPHRSRCPAPRRPGRRDEEPLPATRR--PLRIRARPPHARSG 186 +D P++ + + P R+ P RRP R E P RR P R +P ++G Sbjct: 211 NDAPVVE--EVAEDKRPRRNARPGDRRPRRDGEGGAPGARRGAPRRGAGKPEDGKTG 265
>RS3_BURPS (Q63Q17) 30S ribosomal protein S3| Length = 266 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%) Frame = +1 Query: 22 SDEPLIRNSKTLVSRSPHRSRCPAPRRPGRRDEEPLPATRR--PLRIRARPPHARSG 186 +D P++ + + P R+ P RRP R E P RR P R +P ++G Sbjct: 211 NDAPVVE--EVTEDKRPRRNARPGDRRPRRDGEGGAPGARRGGPRRGAGKPEDGKTG 265
>RS3_BURP1 (Q3JMR9) 30S ribosomal protein S3| Length = 266 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%) Frame = +1 Query: 22 SDEPLIRNSKTLVSRSPHRSRCPAPRRPGRRDEEPLPATRR--PLRIRARPPHARSG 186 +D P++ + + P R+ P RRP R E P RR P R +P ++G Sbjct: 211 NDAPVVE--EVTEDKRPRRNARPGDRRPRRDGEGGAPGARRGGPRRGAGKPEDGKTG 265
>RS3_BURMA (Q62GL1) 30S ribosomal protein S3| Length = 266 Score = 27.7 bits (60), Expect = 6.9 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 2/57 (3%) Frame = +1 Query: 22 SDEPLIRNSKTLVSRSPHRSRCPAPRRPGRRDEEPLPATRR--PLRIRARPPHARSG 186 +D P++ + + P R+ P RRP R E P RR P R +P ++G Sbjct: 211 NDAPVVE--EVTEDKRPRRNARPGDRRPRRDGEGGAPGARRGGPRRGAGKPEDGKTG 265
>MMP16_MOUSE (Q9WTR0) Matrix metalloproteinase-16 precursor (EC 3.4.24.-)| (MMP-16) (Membrane-type matrix metalloproteinase 3) (MT-MMP 3) (MTMMP3) (Membrane-type-3 matrix metalloproteinase) (MT3-MMP) (MT3MMP) Length = 607 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/41 (39%), Positives = 21/41 (51%) Frame = +1 Query: 46 SKTLVSRSPHRSRCPAPRRPGRRDEEPLPATRRPLRIRARP 168 ++ L + PHRS PA R R + P P T RP A+P Sbjct: 300 TRPLPTVPPHRSVPPADPRRHDRPKPPRPPTGRPSYPGAKP 340
>RECQ4_MOUSE (Q75NR7) ATP-dependent DNA helicase Q4 (EC 3.6.1.-) (RecQ| protein-like 4) Length = 1216 Score = 27.7 bits (60), Expect = 6.9 Identities = 16/49 (32%), Positives = 20/49 (40%) Frame = +1 Query: 46 SKTLVSRSPHRSRCPAPRRPGRRDEEPLPATRRPLRIRARPPHARSGSV 192 S+ L + S PAPR PG + E P P R P R G + Sbjct: 125 SRKLQLQKRSLSTVPAPRPPGSKTESPCPDEADDALPRVPEPRPRLGQL 173
>LARP1_HUMAN (Q6PKG0) La-related protein 1 (La ribonucleoprotein domain family| member 1) Length = 1096 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/33 (39%), Positives = 16/33 (48%) Frame = +1 Query: 154 IRARPPHARSGSVPGGGRDHHTGDPDAQARPRR 252 +R +PP A G G D G+PD AR R Sbjct: 25 VRKKPPPAPEGKGEPGPNDVRGGEPDGSARRPR 57
>IKBL_PANTR (Q861W0) NF-kappa-B inhibitor-like protein 1 (Inhibitor of kappa| B-like) (I-kappa-B-like) (IkappaBL) (Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 1) Length = 380 Score = 27.3 bits (59), Expect = 9.0 Identities = 26/81 (32%), Positives = 33/81 (40%), Gaps = 4/81 (4%) Frame = +1 Query: 10 ETVASDEPLIRNSKTLVSRSPHRSRCPAPRRPGRRDEEPLPATRRPLRIRARPPHARSGS 189 E + E +R S+ ++ R P P R G R+E P A R L R G Sbjct: 247 ERARAKEEELRESRARRAQEALGDREPKPTRAGPREEHPRGAGRGSL--------WRFGD 298 Query: 190 V----PGGGRDHHTGDPDAQA 240 V PGG GDP+A A Sbjct: 299 VPWPCPGG------GDPEAMA 313
>GUAA_PELUB (Q4FMW8) GMP synthase [glutamine-hydrolyzing] (EC 6.3.5.2)| (Glutamine amidotransferase) (GMP synthetase) Length = 521 Score = 27.3 bits (59), Expect = 9.0 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%) Frame = -3 Query: 312 DSVQNLLWGLRLKSENTEEEP-PGPSLRVRVPGVMVS 205 D V+ L L L ++ P PGP L +R+PG++ + Sbjct: 378 DEVRKLGLELNLSNDIISRHPFPGPGLAIRMPGIITN 414
>ATX7_MOUSE (Q8R4I1) Ataxin-7 (Spinocerebellar ataxia type 7 protein homolog)| Length = 867 Score = 27.3 bits (59), Expect = 9.0 Identities = 20/59 (33%), Positives = 27/59 (45%) Frame = +1 Query: 19 ASDEPLIRNSKTLVSRSPHRSRCPAPRRPGRRDEEPLPATRRPLRIRARPPHARSGSVP 195 A ++ LIR+ V PH R P P P E LPA +P A P ++ S+P Sbjct: 379 AREKELIRHDSQQV---PHPLRDPHPTPPRTPQEPQLPAESKP--FLASKPKPQTPSLP 432
>XYLT2_PANTR (Q5QQ51) Xylosyltransferase 2 (EC 2.4.2.26) (Xylosyltransferase II)| (Peptide O-xylosyltransferase 2) Length = 865 Score = 27.3 bits (59), Expect = 9.0 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 3/67 (4%) Frame = +1 Query: 31 PLIRNSKTLVSRSPHRSR---CPAPRRPGRRDEEPLPATRRPLRIRARPPHARSGSVPGG 201 P+ + + + SR R P P PGR++ A + PPH +GSV G Sbjct: 91 PVAKVVRAVTSRQRASRRVPPAPPPEAPGRQNLSGAAAGEALVGAAGFPPHGDTGSVEGA 150 Query: 202 GRDHHTG 222 + G Sbjct: 151 PQPTDNG 157
>XYLT2_HUMAN (Q9H1B5) Xylosyltransferase 2 (EC 2.4.2.26) (Xylosyltransferase II)| (xylT-II) (XT-II) (Peptide O-xylosyltransferase 1) Length = 865 Score = 27.3 bits (59), Expect = 9.0 Identities = 18/67 (26%), Positives = 27/67 (40%), Gaps = 3/67 (4%) Frame = +1 Query: 31 PLIRNSKTLVSRSPHRSR---CPAPRRPGRRDEEPLPATRRPLRIRARPPHARSGSVPGG 201 P+ + + + SR R P P PGR++ A + PPH +GSV G Sbjct: 91 PVAKVVRAVTSRQRASRRVPPAPPPEAPGRQNLSGAAAGEALVGAAGFPPHGDTGSVEGA 150 Query: 202 GRDHHTG 222 + G Sbjct: 151 PQPTDNG 157
>KCNC3_HUMAN (Q14003) Potassium voltage-gated channel subfamily C member 3| (Voltage-gated potassium channel subunit Kv3.3) (KSHIIID) Length = 757 Score = 27.3 bits (59), Expect = 9.0 Identities = 17/41 (41%), Positives = 17/41 (41%) Frame = +1 Query: 88 PAPRRPGRRDEEPLPATRRPLRIRARPPHARSGSVPGGGRD 210 PAPR PG R EP P P A G GGG D Sbjct: 56 PAPRGPGGRRAEPCPGL----------PAAAMGRHGGGGGD 86
>SYN_DROME (Q24546) Synapsin [Contains: Synapsin-1 (Syn1) (Syn1-S); Synapsin-2| (Syn2)] Length = 1025 Score = 27.3 bits (59), Expect = 9.0 Identities = 16/39 (41%), Positives = 18/39 (46%) Frame = +1 Query: 55 LVSRSPHRSRCPAPRRPGRRDEEPLPATRRPLRIRARPP 171 L SRS SR +P G PLPA RP + PP Sbjct: 452 LPSRSSVSSRAESPTDEGVAPTPPLPAGPRPAPMGGPPP 490
>CAC1B_RABIT (Q05152) Voltage-dependent N-type calcium channel alpha-1B subunit| (Voltage-gated calcium channel alpha subunit Cav2.2) (Calcium channel, L type, alpha-1 polypeptide isoform 5) (Brain calcium channel III) (BIII) Length = 2339 Score = 27.3 bits (59), Expect = 9.0 Identities = 21/68 (30%), Positives = 29/68 (42%), Gaps = 6/68 (8%) Frame = -2 Query: 364 GVP*LRAHQVIELCP------HDRFRPELALGLEVEEREHRGRAAGAELARPGPRCDGLG 203 G P +R+ + CP H R PE A E E R HR G + + GP G Sbjct: 903 GAPEVRSDRGRGPCPEGGRRHHRRGSPEEAA--EREPRRHRAHRHGPDPGKEGPASGTRG 960 Query: 202 RLRGRNQS 179 R R+++ Sbjct: 961 ERRARHRT 968
>VE2_HPV38 (Q80910) Regulatory protein E2| Length = 441 Score = 27.3 bits (59), Expect = 9.0 Identities = 20/58 (34%), Positives = 24/58 (41%), Gaps = 8/58 (13%) Frame = +1 Query: 61 SRSPHRSRCPAPRRPGRRDEEPLPATRRPLR--------IRARPPHARSGSVPGGGRD 210 S SP R RR GR+ P +RR + R R +RS S GGRD Sbjct: 223 SVSPERPPSQTARRYGRKASSPSTTSRRQRKGQRETTGTQRRRKSRSRSRSTNRGGRD 280
>PIWL3_HUMAN (Q7Z3Z3) Piwi-like protein 3| Length = 882 Score = 27.3 bits (59), Expect = 9.0 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 9/68 (13%) Frame = +1 Query: 64 RSPHRSRCPA-PRRPGRRD-EEP--LPATRRPLR-----IRARPPHARSGSVPGGGRDHH 216 R ++ P PR PG +EP L +T RPL+ +R P A G GG + Sbjct: 16 RESYQQEAPGGPRAPGSATTQEPPQLQSTPRPLQEEVPVVRPLQPRAARGGAGGGAQSQG 75 Query: 217 TGDPDAQA 240 +P +A Sbjct: 76 VKEPGPEA 83
>UL51_HCMVA (P16792) Protein UL51 (HFLF3)| Length = 157 Score = 27.3 bits (59), Expect = 9.0 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 2/47 (4%) Frame = +1 Query: 112 RDEEPLPATRRPLRIR--ARPPHARSGSVPGGGRDHHTGDPDAQARP 246 +D+ P RPL I A P SG + GGG D G+ D A P Sbjct: 23 QDDVDSPVPTRPLVIDEDAEPAAGTSGGLEGGGGDDEDGE-DGHALP 68
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/18 (61%), Positives = 12/18 (66%) Frame = +1 Query: 163 RPPHARSGSVPGGGRDHH 216 +PPH R G P GGR HH Sbjct: 224 KPPH-RGGGEPRGGRQHH 240
>YT35_STRFR (P20186) Hypothetical 35.5 kDa protein in transposon Tn4556| Length = 348 Score = 27.3 bits (59), Expect = 9.0 Identities = 18/49 (36%), Positives = 23/49 (46%), Gaps = 3/49 (6%) Frame = +1 Query: 61 SRSPHRSRCPAPRRPGRRDEEPLPATRRPLRI---RARPPHARSGSVPG 198 +R P R+ APR R P+PA R P R RP AR+ + G Sbjct: 256 TRLPRRTTPSAPRPSSRPARPPIPAARPPPRRTPGTPRPAAARARAPAG 304
>UL61_HCMVA (P16818) Hypothetical protein UL61| Length = 431 Score = 27.3 bits (59), Expect = 9.0 Identities = 17/55 (30%), Positives = 23/55 (41%) Frame = -3 Query: 288 GLRLKSENTEEEPPGPSLRVRVPGVMVSAASGDGTRASMRRTSADTKGAAGSRKG 124 G L + + P G R R PG + SAA G G+R + D G +G Sbjct: 215 GTSLGTGVRDPAPRGGRGRARTPGPVHSAAGGPGSRRRSPGAARDPGPEPGEERG 269
>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa DNA-pairing protein) (hPOMp Length = 707 Score = 27.3 bits (59), Expect = 9.0 Identities = 11/18 (61%), Positives = 12/18 (66%) Frame = +1 Query: 163 RPPHARSGSVPGGGRDHH 216 +PPH R G P GGR HH Sbjct: 232 KPPH-RGGGEPRGGRQHH 248
>IKBL_HUMAN (Q9UBC1) NF-kappa-B inhibitor-like protein 1 (Inhibitor of kappa| B-like) (I-kappa-B-like) (IkappaBL) (Nuclear factor of kappa light polypeptide gene enhancer in B-cells inhibitor-like 1) Length = 381 Score = 27.3 bits (59), Expect = 9.0 Identities = 26/81 (32%), Positives = 33/81 (40%), Gaps = 4/81 (4%) Frame = +1 Query: 10 ETVASDEPLIRNSKTLVSRSPHRSRCPAPRRPGRRDEEPLPATRRPLRIRARPPHARSGS 189 E + E +R S+ ++ R P P R G R+E P A R L R G Sbjct: 248 ERARAKEEELRESRARRAQEALGDREPKPTRAGPREEHPRGAGRGSL--------WRFGD 299 Query: 190 V----PGGGRDHHTGDPDAQA 240 V PGG GDP+A A Sbjct: 300 VPWPCPGG------GDPEAMA 314 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 53,270,169 Number of Sequences: 219361 Number of extensions: 1065639 Number of successful extensions: 5184 Number of sequences better than 10.0: 99 Number of HSP's better than 10.0 without gapping: 4609 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5158 length of database: 80,573,946 effective HSP length: 108 effective length of database: 56,882,958 effective search space used: 1365190992 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
