>YET4_YEAST (P40063) Hypothetical 24.4 kDa protein in SSA4-NUP157 intergenic|
           region
          Length = 208

 Score = 32.3 bits (72), Expect = 0.53
 Identities = 34/141 (24%), Positives = 51/141 (36%), Gaps = 15/141 (10%)
 Frame = +3

Query: 54  WSPINQGNDCGCFDGESARRGALGRVGASVWRPYILTGLKLDFHYVGLEDYYCLTRLLKK 233
           +S  N  +D  CFD    +   L R G S  R      L+              TR L +
Sbjct: 2   YSNHNLNSDDCCFDWNEEKAAELQRTGVSFDRSLTPQSLRTS------------TRRLSE 49

Query: 234 RSWELGGMTHLDTKPISIGGSPN------------HDQSPEAPS-RIRYDETQETEAGK- 371
            + +  G  H+DT P  +    +            H  SP APS R R D+    E+ + 
Sbjct: 50  ENKQQSGTMHIDTSPSVVSDIISSRRDRSQDFFGPHSSSPIAPSERQRADQRSRLESMRL 109

Query: 372 -SLNEKLTWTNGPYDSSHSMV 431
               +K+T   G  +    M+
Sbjct: 110 TRRRDKMTKVRGGLEKMEEMI 130

>TLL1_CHICK (Q9DER7) Tolloid-like protein 1 precursor (EC 3.4.24.-) (Chicken|
            tolloid-like protein 1) (Metalloprotease colloid)
          Length = 1008

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 24/78 (30%), Positives = 34/78 (43%), Gaps = 6/78 (7%)
 Frame = +3

Query: 63   INQGNDCG-----CFDGESARRGALGRV-GASVWRPYILTGLKLDFHYVGLEDYYCLTRL 224
            I Q  +C       FDGES +   LGR+ G+ +  P I TG K+   ++  +        
Sbjct: 816  IEQHQECAYDHLEVFDGESEKSPILGRLCGSKIPEPLIATGNKMFLRFIS-DASVQRKGF 874

Query: 225  LKKRSWELGGMTHLDTKP 278
                S E GG    +TKP
Sbjct: 875  QATHSTECGGRLKAETKP 892

>CG12_CANAL (P43062) G1/S-specific cyclin CLN2|
          Length = 465

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 13/26 (50%), Positives = 19/26 (73%)
 Frame = +3

Query: 189 VGLEDYYCLTRLLKKRSWELGGMTHL 266
           V L D YC TR++KK+ ++L G+T L
Sbjct: 99  VNLIDRYCSTRIVKKQHYQLLGLTSL 124

>UNC5B_HUMAN (Q8IZJ1) Netrin receptor UNC5B precursor (Unc-5 homolog B) (Unc-5|
           homolog 2) (p53-regulated receptor for death and life
           protein 1)
          Length = 945

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 19/64 (29%), Positives = 30/64 (46%)
 Frame = +3

Query: 90  FDGESARRGALGRVGASVWRPYILTGLKLDFHYVGLEDYYCLTRLLKKRSWELGGMTHLD 269
           F GES  R A+ R+  +V+ P + T L+       LED     + + +    LGG    +
Sbjct: 682 FTGESYSRSAVKRLQLAVFAPALCTSLEYSLRVYCLEDTPVALKEVLELERTLGGYLVEE 741

Query: 270 TKPI 281
            KP+
Sbjct: 742 PKPL 745

>TOP1_ECOLI (P06612) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)|
           (Omega-protein) (Relaxing enzyme) (Untwisting enzyme)
           (Swivelase)
          Length = 865

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 94  MVNRLGEEPWGEWELQFGVL 153
           +VNR+G +PW  WE  + VL
Sbjct: 67  LVNRMGVDPWHNWEAHYEVL 86

>UNC5B_MOUSE (Q8K1S3) Netrin receptor UNC5B precursor (Unc-5 homolog B) (Unc-5|
           homolog 2)
          Length = 945

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 18/64 (28%), Positives = 30/64 (46%)
 Frame = +3

Query: 90  FDGESARRGALGRVGASVWRPYILTGLKLDFHYVGLEDYYCLTRLLKKRSWELGGMTHLD 269
           F GES  R A+ R+  +++ P + T L+       LED     + + +    LGG    +
Sbjct: 682 FMGESYSRSAVKRLQLAIFAPALCTSLEYSLRVYCLEDTPVALKEVLELERTLGGYLVEE 741

Query: 270 TKPI 281
            KP+
Sbjct: 742 PKPL 745

>SENP2_RAT (Q9EQE1) Sentrin-specific protease 2 (EC 3.4.22.-)|
           (Sentrin/SUMO-specific protease SENP2) (Axin-associating
           molecule) (Axam)
          Length = 588

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 12/37 (32%), Positives = 25/37 (67%), Gaps = 1/37 (2%)
 Frame = +1

Query: 286 SVVPPIMTNHLKRPQELDTMKPKK-LKQENH*MRS*H 393
           S  PP +++H  +  ++DT+K K  ++++NH +R+ H
Sbjct: 231 STFPPAVSHHSSQRTQMDTLKTKGWMEEQNHGVRTTH 267

>TOP1_SALTY (P0A2I1) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)|
           (Omega-protein) (Relaxing enzyme) (Untwisting enzyme)
           (Swivelase)
          Length = 865

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 94  MVNRLGEEPWGEWELQFGVL 153
           +VNR+G +PW  W+  + VL
Sbjct: 67  LVNRMGVDPWHNWDAHYEVL 86

>TOP1_SALTI (P0A2I2) DNA topoisomerase 1 (EC 5.99.1.2) (DNA topoisomerase I)|
           (Omega-protein) (Relaxing enzyme) (Untwisting enzyme)
           (Swivelase)
          Length = 865

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 94  MVNRLGEEPWGEWELQFGVL 153
           +VNR+G +PW  W+  + VL
Sbjct: 67  LVNRMGVDPWHNWDAHYEVL 86


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 69,485,694
Number of Sequences: 219361
Number of extensions: 1399179
Number of successful extensions: 3518
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 3420
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3518
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)