>ref|XM_472192.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2181

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                  
Query: 182 ggcgacggcggcgtcagggtcgtcgccaggatctgcccc 220
           |||| |||||||||||| |||||||| ||||||||||||
Sbjct: 34  ggcggcggcggcgtcagagtcgtcgcgaggatctgcccc 72

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                       
Query: 182      ggcgacggcggcgtcagggtcgtcgccaggatctgcccc 220
                |||| |||||||||||| |||||||| ||||||||||||
Sbjct: 18376239 ggcggcggcggcgtcagagtcgtcgcgaggatctgcccc 18376201



 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 119      tcgatgggggaggaggcggcg 139
                |||||||||||||||||||||
Sbjct: 10524832 tcgatgggggaggaggcggcg 10524812

>dbj|AK101769.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033064H15, full
           insert sequence
          Length = 2532

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 36/39 (92%)
 Strand = Plus / Plus

                                                  
Query: 182 ggcgacggcggcgtcagggtcgtcgccaggatctgcccc 220
           |||| |||||||||||| |||||||| ||||||||||||
Sbjct: 130 ggcggcggcggcgtcagagtcgtcgcgaggatctgcccc 168

>emb|AL607003.3|OSJN00130 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0006N15,
             complete sequence
          Length = 133413

 Score = 54.0 bits (27), Expect = 3e-04
 Identities = 36/39 (92%)
 Strand = Plus / Minus

                                                    
Query: 182   ggcgacggcggcgtcagggtcgtcgccaggatctgcccc 220
             |||| |||||||||||| |||||||| ||||||||||||
Sbjct: 78162 ggcggcggcggcgtcagagtcgtcgcgaggatctgcccc 78124

>gb|AC145775.2| Oryza sativa (japonica cultivar-group) chromosome 11 PAC clone P0313E01,
              complete sequence
          Length = 149215

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                       
Query: 126    gggaggaggcggcggtagatctgat 150
              |||||||||||||||||||||||||
Sbjct: 116886 gggaggaggcggcggtagatctgat 116910

>gb|AC129225.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0051D10, complete sequence
          Length = 140272

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                       
Query: 126    gggaggaggcggcggtagatctgat 150
              |||||||||||||||||||||||||
Sbjct: 104126 gggaggaggcggcggtagatctgat 104102

>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                         
Query: 126      gggaggaggcggcggtagatctgat 150
                |||||||||||||||||||||||||
Sbjct: 25241616 gggaggaggcggcggtagatctgat 25241640

>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 50.1 bits (25), Expect = 0.004
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                         
Query: 126      gggaggaggcggcggtagatctgat 150
                |||||||||||||||||||||||||
Sbjct: 25560274 gggaggaggcggcggtagatctgat 25560298

>gb|AC093493.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0072C16, complete sequence
          Length = 159525

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 178   gggaggcgacggcggcgtcagg 199
             ||||||||||||||||||||||
Sbjct: 64427 gggaggcgacggcggcgtcagg 64406

>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
               sequence
          Length = 29737217

 Score = 44.1 bits (22), Expect = 0.25
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 178     gggaggcgacggcggcgtcagg 199
               ||||||||||||||||||||||
Sbjct: 2970411 gggaggcgacggcggcgtcagg 2970390

>gb|BC050513.1| Danio rerio heterogeneous nuclear ribonucleoprotein A0, like, mRNA
           (cDNA clone IMAGE:5602478), partial cds
          Length = 1462

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 123 tgggggaggaggcggcggtag 143
           |||||||||||||||||||||
Sbjct: 912 tgggggaggaggcggcggtag 932

>gb|BC065334.1| Danio rerio heterogeneous nuclear ribonucleoprotein A0, like, mRNA
           (cDNA clone IMAGE:6964916), partial cds
          Length = 1394

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 123 tgggggaggaggcggcggtag 143
           |||||||||||||||||||||
Sbjct: 843 tgggggaggaggcggcggtag 863

>emb|AL731604.3|OSJN00247 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0042D13,
             complete sequence
          Length = 163429

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 119   tcgatgggggaggaggcggcg 139
             |||||||||||||||||||||
Sbjct: 24169 tcgatgggggaggaggcggcg 24149

>emb|BX088707.15| Zebrafish DNA sequence from clone CH211-195B11 in linkage group 14,
              complete sequence
          Length = 137128

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 123    tgggggaggaggcggcggtag 143
              |||||||||||||||||||||
Sbjct: 133362 tgggggaggaggcggcggtag 133382

>ref|XM_691789.1| PREDICTED: Danio rerio heterogeneous nuclear ribonucleoprotein A0,
           like (hnrpa0l), mRNA
          Length = 1699

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 123 tgggggaggaggcggcggtag 143
           |||||||||||||||||||||
Sbjct: 965 tgggggaggaggcggcggtag 985

>gb|AC155313.2| Mus musculus BAC clone RP23-349D10 from chromosome 15, complete
             sequence
          Length = 213367

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 228   ccgctcctgccgccgggttcc 248
             |||||||||||||||||||||
Sbjct: 53309 ccgctcctgccgccgggttcc 53329

>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 119     tcgatgggggaggaggcggcg 139
               |||||||||||||||||||||
Sbjct: 2601086 tcgatgggggaggaggcggcg 2601066

>emb|AL663009.3|OSJN00210 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0052B05,
              complete sequence
          Length = 144687

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 119    tcgatgggggaggaggcggcg 139
              |||||||||||||||||||||
Sbjct: 140154 tcgatgggggaggaggcggcg 140134

>dbj|AK119366.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-131-H04, full
           insert sequence
          Length = 1849

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 119 tcgatgggggaggaggcggcg 139
           |||||||||||||||||||||
Sbjct: 49  tcgatgggggaggaggcggcg 69

>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 119     tcgatgggggaggaggcggcg 139
               |||||||||||||||||||||
Sbjct: 2601030 tcgatgggggaggaggcggcg 2601010

>emb|AL929350.3|CNS08CCE Oryza sativa chromosome 12, . BAC OSJNBb0104J15 of library OSJNBb from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 136490

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 119   tcgatgggggaggaggcggcg 139
             |||||||||||||||||||||
Sbjct: 66923 tcgatgggggaggaggcggcg 66943

>gb|AC123059.3| Mus musculus BAC clone RP23-188K16 from 15, complete sequence
          Length = 188863

 Score = 42.1 bits (21), Expect = 1.0
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 228   ccgctcctgccgccgggttcc 248
             |||||||||||||||||||||
Sbjct: 75034 ccgctcctgccgccgggttcc 75014

>ref|XM_860618.1| PREDICTED: Canis familiaris similar to nuclear receptor subfamily
           2, group F, member 6, transcript variant 4 (LOC609720),
           mRNA
          Length = 2107

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 278 cgcgcatccgggcccggcgc 297
           ||||||||||||||||||||
Sbjct: 368 cgcgcatccgggcccggcgc 349

>ref|XM_860601.1| PREDICTED: Canis familiaris similar to nuclear receptor subfamily
           2, group F, member 6, transcript variant 3 (LOC609720),
           mRNA
          Length = 2146

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 278 cgcgcatccgggcccggcgc 297
           ||||||||||||||||||||
Sbjct: 368 cgcgcatccgggcccggcgc 349

>ref|XM_860583.1| PREDICTED: Canis familiaris similar to nuclear receptor subfamily
           2, group F, member 6, transcript variant 2 (LOC609720),
           mRNA
          Length = 2155

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 278 cgcgcatccgggcccggcgc 297
           ||||||||||||||||||||
Sbjct: 368 cgcgcatccgggcccggcgc 349

>ref|XM_847319.1| PREDICTED: Canis familiaris similar to nuclear receptor subfamily
           2, group F, member 6, transcript variant 1 (LOC609720),
           mRNA
          Length = 2140

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 278 cgcgcatccgggcccggcgc 297
           ||||||||||||||||||||
Sbjct: 368 cgcgcatccgggcccggcgc 349

>ref|XM_532298.2| PREDICTED: Canis familiaris similar to mitochondrial folate
           transporter/carrier (LOC475064), mRNA
          Length = 1241

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 187 cggcggcgtcagggtcgtcg 206
           ||||||||||||||||||||
Sbjct: 108 cggcggcgtcagggtcgtcg 127

>gb|AC068295.15| Homo sapiens 3 BAC RP11-44H4 (Roswell Park Cancer Institute Human BAC
              Library) complete sequence
          Length = 170867

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 75     aaaagattctccattgattc 94
              ||||||||||||||||||||
Sbjct: 166561 aaaagattctccattgattc 166580

>gb|AC155827.10| Mus musculus 10 BAC RP24-408N5 (Roswell Park Cancer Institute (C57BL/6J
             Male) Mouse BAC Library) complete sequence
          Length = 149754

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 64    cttcatctacaaaaagattc 83
             ||||||||||||||||||||
Sbjct: 97272 cttcatctacaaaaagattc 97291

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 179      ggaggcgacggcggcgtcagggtcgtcg 206
                |||||||| ||||||||||| |||||||
Sbjct: 23995755 ggaggcgagggcggcgtcagcgtcgtcg 23995728

>dbj|AP003750.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1174_G05
          Length = 111202

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 179   ggaggcgacggcggcgtcagggtcgtcg 206
             |||||||| ||||||||||| |||||||
Sbjct: 37363 ggaggcgagggcggcgtcagcgtcgtcg 37336

>emb|AL691419.10| Mouse DNA sequence from clone RP23-95I4 on chromosome 3, complete
              sequence
          Length = 249405

 Score = 40.1 bits (20), Expect = 4.0
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 1      ctgccatttcgaattctcca 20
              ||||||||||||||||||||
Sbjct: 153109 ctgccatttcgaattctcca 153128


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,464,953
Number of Sequences: 3902068
Number of extensions: 2464953
Number of successful extensions: 59412
Number of sequences better than 10.0: 32
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58852
Number of HSP's gapped (non-prelim): 560
length of query: 303
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 281
effective length of database: 17,147,199,772
effective search space: 4818363135932
effective search space used: 4818363135932
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)