ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl42g12 |
|---|---|
| Clone Library Name | barley_pub |
>ALR_HUMAN (P55789) Augmenter of liver regeneration (hERV1 protein)| Length = 125 Score = 33.9 bits (76), Expect = 0.095 Identities = 21/55 (38%), Positives = 22/55 (40%), Gaps = 15/55 (27%) Frame = -1 Query: 250 LLANCGDKLARAC-CHWQCH--------------SCCLSKLIETWRGGWMDGCCD 131 L N D RAC W CH C SK+ E WR GW DG CD Sbjct: 73 LCRNHPDTRTRACFTQWLCHLHNEVNRKLGKPDFDC--SKVDERWRDGWKDGSCD 125
>LPAT_MAIZE (Q41745) 1-acyl-sn-glycerol-3-phosphate acyltransferase PLS1 (EC| 2.3.1.51) (Phospholipid synthesis protein 1) Length = 374 Score = 31.6 bits (70), Expect = 0.47 Identities = 17/41 (41%), Positives = 22/41 (53%) Frame = +3 Query: 279 TSFCLAPLLGFSSAIHRWCQWQWTWRGVAWRCAGLALPQGL 401 T F LL + +W Q TWRGVA+ AG+AL G+ Sbjct: 308 TLFWSCLLLFGAIEFFKWTQLLSTWRGVAFTAAGMALVTGV 348
>PER3_HUMAN (P56645) Period circadian protein 3 (hPER3)| Length = 1201 Score = 30.4 bits (67), Expect = 1.0 Identities = 14/41 (34%), Positives = 23/41 (56%) Frame = +3 Query: 84 FLHAFAVPSIYPSTSLSQHPSIHPPLQVSISLLKQQEWHCQ 206 FL A A +I PS S + P++ PP V+ ++++W Q Sbjct: 870 FLGATASSAISPSMSSAMSPTLDPPPSVTSQRREEEKWEAQ 910
>INO80_ASPFU (Q4WTV7) Putative DNA helicase ino80 (EC 3.6.1.-)| Length = 1708 Score = 30.0 bits (66), Expect = 1.4 Identities = 24/85 (28%), Positives = 42/85 (49%), Gaps = 1/85 (1%) Frame = -3 Query: 404 REALRESKASASPCNASPCPLPLAPPMDSRRKTKKGSKAKGCRA-SIWPIILAACELWRQ 228 ++A +++ +A + PLPLAP D R++T K +AKG R+ P ++A E Sbjct: 527 KQAEKDAAEAAYAAMENDEPLPLAPKEDPRKETVK-KEAKGARSKETTPAPVSAFESKGY 585 Query: 227 TS*SMLPLAMPFLLFEQAYRDLERR 153 ++EQ +RD+ R+ Sbjct: 586 NQ-----------IYEQIWRDIARK 599
>HXA2_HETFR (Q9IA20) Homeobox protein Hox-A2| Length = 363 Score = 30.0 bits (66), Expect = 1.4 Identities = 20/56 (35%), Positives = 25/56 (44%) Frame = -3 Query: 392 RESKASASPCNASPCPLPLAPPMDSRRKTKKGSKAKGCRASIWPIILAACELWRQT 225 R+S+ SP SP P PP K KK SK AS P A+C ++T Sbjct: 66 RQSRPKQSPNGTSPLPAATLPPEYPWMKEKKNSKKNHLPASSGP--AASCLSQKET 119
>ALR_RAT (Q63042) Augmenter of liver regeneration| Length = 125 Score = 29.6 bits (65), Expect = 1.8 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = -1 Query: 181 SKLIETWRGGWMDGCCD 131 S++ E WR GW DG CD Sbjct: 109 SRVDERWRDGWKDGSCD 125
>ALR_MOUSE (P56213) Augmenter of liver regeneration| Length = 125 Score = 29.6 bits (65), Expect = 1.8 Identities = 10/17 (58%), Positives = 12/17 (70%) Frame = -1 Query: 181 SKLIETWRGGWMDGCCD 131 S++ E WR GW DG CD Sbjct: 109 SRVDERWRDGWKDGSCD 125
>OAR2_LOCMI (Q25322) Putative tyramine receptor 2 (Tyr-Loc2)| Length = 484 Score = 29.3 bits (64), Expect = 2.3 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%) Frame = -3 Query: 389 ESKASASPCNASPCPLPLAPPM-DSRRKTKKGSKAK 285 + ++ +S N + P P APP + RRKTKK SK K Sbjct: 272 DQESVSSETNHNELPPPPAPPSKEKRRKTKKKSKKK 307
>OAR1_LOCMI (Q25321) Tyramine receptor 1 (Tyr-Loc1)| Length = 484 Score = 29.3 bits (64), Expect = 2.3 Identities = 16/36 (44%), Positives = 22/36 (61%), Gaps = 1/36 (2%) Frame = -3 Query: 389 ESKASASPCNASPCPLPLAPPM-DSRRKTKKGSKAK 285 + ++ +S N + P P APP + RRKTKK SK K Sbjct: 272 DQESVSSETNHNELPPPPAPPSKEKRRKTKKKSKKK 307
>UBP53_MOUSE (P15975) Inactive ubiquitin carboxyl-terminal hydrolase 53| (Ubiquitin-specific peptidase 53) (Per-hexamer repeat protein 3) Length = 1069 Score = 29.3 bits (64), Expect = 2.3 Identities = 20/63 (31%), Positives = 33/63 (52%), Gaps = 1/63 (1%) Frame = +3 Query: 105 PSIYPSTSLSQHPSIHPPLQVSISLLKQQEWHC-QWQHALASLSPQFASSKNYRPDGGST 281 PS P SLS P+ P L+ S + ++++ Q + A+ P S+ +++PD ST Sbjct: 953 PSSLPKHSLS--PASGPSLEGSPCMTQERDKETIQVKQLAANSYPSSCSTNSFQPDQDST 1010 Query: 282 SFC 290 S C Sbjct: 1011 SVC 1013
>CO6_RAT (Q811M5) Complement component C6 precursor| Length = 934 Score = 28.9 bits (63), Expect = 3.0 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = -3 Query: 407 LREALRESKASASPCNASPCP 345 LR+AL+E A PC +PCP Sbjct: 507 LRKALQEYAAKFDPCQCAPCP 527
>CO6_PANTR (P61134) Complement component C6 precursor| Length = 934 Score = 28.9 bits (63), Expect = 3.0 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = -3 Query: 407 LREALRESKASASPCNASPCP 345 LR+AL+E A PC +PCP Sbjct: 507 LRKALQEYAAKFDPCQCAPCP 527
>CO6_HUMAN (P13671) Complement component C6 precursor| Length = 934 Score = 28.9 bits (63), Expect = 3.0 Identities = 11/21 (52%), Positives = 14/21 (66%) Frame = -3 Query: 407 LREALRESKASASPCNASPCP 345 LR+AL+E A PC +PCP Sbjct: 507 LRKALQEYAAKFDPCQCAPCP 527
>DRD2L_FUGRU (P53453) D(2)-like dopamine receptor| Length = 463 Score = 28.9 bits (63), Expect = 3.0 Identities = 12/40 (30%), Positives = 20/40 (50%) Frame = -3 Query: 374 ASPCNASPCPLPLAPPMDSRRKTKKGSKAKGCRASIWPII 255 ++ NASP P PP + +R K G K + + P++ Sbjct: 324 STKANASPTSTPPTPPEEGQRTEKNGDPTKEAQGNPAPVV 363
>POLR_OYMV (P20127) RNA replicase polyprotein (EC 2.7.7.48)| Length = 1776 Score = 28.9 bits (63), Expect = 3.0 Identities = 22/87 (25%), Positives = 36/87 (41%) Frame = +3 Query: 3 REHIPLPSTFGVKLTPLASIFV*SFSRFLHAFAVPSIYPSTSLSQHPSIHPPLQVSISLL 182 +EH+P G+ + F H AV + + L H S +Q S+ + Sbjct: 44 KEHLPFLLAAGIPTS--------GFGCNPHPHAVHKVIETFLLFNHWSFMATVQASVMFM 95 Query: 183 KQQEWHCQWQHALASLSPQFASSKNYR 263 K ++ LAS++P F+ NYR Sbjct: 96 KPSKFK-----KLASVNPNFSELVNYR 117
>JIL1_DROME (Q9V3I5) Chromosomal serine/threonine-protein kinase JIL-1 (EC| 2.7.11.1) Length = 1207 Score = 28.5 bits (62), Expect = 4.0 Identities = 15/38 (39%), Positives = 23/38 (60%) Frame = -3 Query: 125 GRWVDRGNGKGMQES*EASHENGGERRELHTEGGGEGN 12 G+ V GNGK + S + NG ++ +L+TEG G G+ Sbjct: 47 GQLVANGNGKTRKNSNSETMTNG-KKSKLNTEGSGSGS 83
>PYGO_DROME (Q9V9W8) Protein pygopus (Protein gammy legs)| Length = 815 Score = 28.5 bits (62), Expect = 4.0 Identities = 11/23 (47%), Positives = 12/23 (52%) Frame = -1 Query: 397 P*GRARPAHLHATPRHVHCHWHH 329 P G P H H +P H H H HH Sbjct: 652 PGGMNGPPHPHMSPHHGHPHHHH 674
>INO80_EMENI (Q5BAZ5) Putative DNA helicase ino80 (EC 3.6.1.-)| Length = 1612 Score = 28.5 bits (62), Expect = 4.0 Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 4/67 (5%) Frame = +3 Query: 117 PSTSLSQHPSIHPPLQVSISLLKQQEWHCQWQHALASLS----PQFASSKNYRPDGGSTS 284 PST HPS P +S K+ E H H + S PQ + K +P + Sbjct: 122 PSTPSHAHPSSRPDSHAHVSPKKEPESHFAVNHGAPAYSVMREPQASPPKEAKPARAADP 181 Query: 285 FCLAPLL 305 A +L Sbjct: 182 MSFASIL 188
>SIPA_SALTI (P74849) Cell invasion protein sipA (Effector protein sipA)| Length = 685 Score = 28.1 bits (61), Expect = 5.2 Identities = 15/52 (28%), Positives = 24/52 (46%) Frame = +3 Query: 150 HPPLQVSISLLKQQEWHCQWQHALASLSPQFASSKNYRPDGGSTSFCLAPLL 305 HP L+ + LK+ H + LA ++ QFA G T + L+ +L Sbjct: 596 HPELKAKMETLKEVITHHPQKEKLAEIALQFAREAGLTRQKGETDYVLSNVL 647
>V224_FOWPV (Q9J511) Putative ankyrin repeat protein FPV224| Length = 146 Score = 28.1 bits (61), Expect = 5.2 Identities = 18/56 (32%), Positives = 26/56 (46%) Frame = +3 Query: 144 SIHPPLQVSISLLKQQEWHCQWQHALASLSPQFASSKNYRPDGGSTSFCLAPLLGF 311 S+ PL +I+LLK + SL Q+ + + R G T FC A LG+ Sbjct: 9 SLSTPLHHAINLLKTD---------IVSLLMQYKADASIRDSKGITPFCYAMYLGY 55
>MSB4_YEAST (Q12317) GTPase-activating protein MSB4 (Multicopy suppressor of| bud emergence 4) Length = 492 Score = 28.1 bits (61), Expect = 5.2 Identities = 11/23 (47%), Positives = 14/23 (60%) Frame = +2 Query: 272 RLYILLPCSPSWFFFCYPSVVPV 340 RL L C+ SWF C+ VVP+ Sbjct: 331 RLPTLTLCTASWFMSCFVGVVPI 353
>CSMD2_HUMAN (Q7Z408) CUB and sushi domain-containing protein 2 (CUB and sushi| multiple domains protein 2) Length = 3487 Score = 27.7 bits (60), Expect = 6.8 Identities = 27/96 (28%), Positives = 35/96 (36%), Gaps = 14/96 (14%) Frame = +3 Query: 162 QVSISLLKQQEWHCQWQHALASLSPQFAS-----SKNYRPDGG-----STSFCLAPLLGF 311 Q+S+ + E + W L P F S+ R D G S SF P L Sbjct: 3043 QLSLPAVFTCEGNGSWTGELPQCFPVFCGDPGVPSRGRREDRGFSYRSSVSFSCHPPLVL 3102 Query: 312 SSAIHRWCQWQWTWRGVAWRCAGLAL----PQGLPQ 407 + R+CQ TW G C L G+PQ Sbjct: 3103 VGSPRRFCQSDGTWSGTQPSCIDPTLTTCADPGVPQ 3138
>ENV_CAEVC (P31626) Env polyprotein (Coat polyprotein) [Contains: Leader| peptide; Surface protein; Transmembrane protein] Length = 966 Score = 27.7 bits (60), Expect = 6.8 Identities = 14/32 (43%), Positives = 19/32 (59%), Gaps = 3/32 (9%) Frame = +1 Query: 178 CSNSRNGIAN---GSML*LVCRHNSQAARIIG 264 CS S N + N G +L ++CR NS RI+G Sbjct: 460 CSRSGNYLYNSSEGGLLLILCRQNSTLTRILG 491
>CRLF2_MOUSE (Q8CII9) Cytokine receptor-like factor 2 precursor (Type I cytokine| receptor delta 1) (Cytokine receptor-like molecule 2) (CRLM-2) (Thymic stromal lymphopoietin protein receptor) (TSLPR) Length = 359 Score = 27.7 bits (60), Expect = 6.8 Identities = 13/20 (65%), Positives = 15/20 (75%), Gaps = 1/20 (5%) Frame = -3 Query: 380 ASASPCNASPCPLP-LAPPM 324 ASA+ C ASP P P LAPP+ Sbjct: 214 ASAASCTASPAPSPALAPPL 233
>Y782_OCEIH (Q8ES61) Putative metal-dependent hydrolase OB0782 (EC 3.-.-.-)| Length = 172 Score = 27.3 bits (59), Expect = 8.9 Identities = 17/59 (28%), Positives = 28/59 (47%) Frame = +3 Query: 156 PLQVSISLLKQQEWHCQWQHALASLSPQFASSKNYRPDGGSTSFCLAPLLGFSSAIHRW 332 P+++S+SL+ + H +W L LSP P+ GS S +G + I+ W Sbjct: 104 PIEISLSLI--EALHKRWCSLLRDLSPTDMERTFKHPESGSIS------IGKNIGIYAW 154
>GYP3_YEAST (P48566) GTPase-activating protein GYP3 (Protein MSB3) (Multicopy| suppressor of bud emergence 3) Length = 633 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/24 (41%), Positives = 15/24 (62%) Frame = +2 Query: 269 WRLYILLPCSPSWFFFCYPSVVPV 340 +RL + C+ SWF C+ VVP+ Sbjct: 419 YRLPPITLCTASWFMSCFVGVVPI 442
>ERF_MOUSE (P70459) ETS domain-containing transcription factor ERF| Length = 551 Score = 27.3 bits (59), Expect = 8.9 Identities = 14/35 (40%), Positives = 19/35 (54%) Frame = -3 Query: 386 SKASASPCNASPCPLPLAPPMDSRRKTKKGSKAKG 282 S +S+S ++SP L PP RR+ G KA G Sbjct: 363 SASSSSSSSSSPFKFKLQPPPLGRRQRAAGEKAPG 397
>ZMY15_HUMAN (Q9H091) Zinc finger MYND domain-containing protein 15| Length = 703 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/37 (35%), Positives = 18/37 (48%) Frame = -3 Query: 386 SKASASPCNASPCPLPLAPPMDSRRKTKKGSKAKGCR 276 S A +P P P P APP +RR+ + +G R Sbjct: 664 SGARPAPGPPPPSPTPSAPPAPTRRRRGEKKPGRGAR 700
>SLIT3_HUMAN (O75094) Slit homolog 3 protein precursor (Slit-3) (Multiple| epidermal growth factor-like domains 5) Length = 1523 Score = 27.3 bits (59), Expect = 8.9 Identities = 22/75 (29%), Positives = 26/75 (34%), Gaps = 1/75 (1%) Frame = -1 Query: 235 GDKLARACCHWQCHSCCLSKLIETWRGGWMDGCCDREVDG*IEGTAKACKNLEKLHTKME 56 G K C H C S ++ R GW CD+E C H K Sbjct: 1331 GCKSCTVCKHGLCRSVEKDSVVCECRPGWTGPLCDQE-------ARDPCLGHRCHHGKCV 1383 Query: 55 ARGVSFTPK-VEGRG 14 A G S+ K EG G Sbjct: 1384 ATGTSYMCKCAEGYG 1398
>CO6_PONPY (P61135) Complement component C6 precursor| Length = 934 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/21 (47%), Positives = 13/21 (61%) Frame = -3 Query: 407 LREALRESKASASPCNASPCP 345 LR+A +E A PC +PCP Sbjct: 507 LRKAFQEYAAKFDPCQCAPCP 527
>CCMF_PSEFL (P52225) Cytochrome c-type biogenesis protein cycK| Length = 660 Score = 27.3 bits (59), Expect = 8.9 Identities = 13/39 (33%), Positives = 18/39 (46%) Frame = +3 Query: 282 SFCLAPLLGFSSAIHRWCQWQWTWRGVAWRCAGLALPQG 398 +F +A LLG W +W W VAW G+ + G Sbjct: 194 AFAIAALLG-GRLDAAWARWSRPWTIVAWAFLGIGITLG 231
>YX0A_CAEEL (Q11116) Hypothetical protein C03B1.10| Length = 52 Score = 27.3 bits (59), Expect = 8.9 Identities = 10/20 (50%), Positives = 13/20 (65%) Frame = -1 Query: 163 WRGGWMDGCCDREVDG*IEG 104 W GWMDG D +DG ++G Sbjct: 20 WMDGWMDGWMDGWMDGWMDG 39
>MKNK2_XENLA (Q6P431) MAP kinase-interacting serine/threonine-protein kinase 2| (EC 2.7.11.1) (MAP kinase signal-integrating kinase 2) (Mnk2) Length = 467 Score = 27.3 bits (59), Expect = 8.9 Identities = 16/59 (27%), Positives = 32/59 (54%), Gaps = 6/59 (10%) Frame = -3 Query: 404 REALRESKASASPC----NASPCPLPLAPPMDSR--RKTKKGSKAKGCRASIWPIILAA 246 RE E ++S C A+ C + L+PP +S+ ++ ++GSK S+ P+++ + Sbjct: 408 REEEEEGTENSSLCPFVVKATSCSMQLSPPSESKLAKRRQQGSKGGISPPSLAPLLIVS 466
>YQXM_BACSU (P40949) Hypothetical protein yqxM| Length = 253 Score = 27.3 bits (59), Expect = 8.9 Identities = 17/57 (29%), Positives = 28/57 (49%), Gaps = 6/57 (10%) Frame = -1 Query: 346 HCHWHHRW------IAEEKPRRGARQKDVEPPSGL*FLLLANCGDKLARACCHWQCH 194 +CH+ RW I+++ +G V P L F +L N G+KL ++ W+ H Sbjct: 67 NCHYDKRWDQSDLHISDQTDTKGT----VCSPFAL-FAVLENTGEKLKKSKWKWELH 118
>NU153_RAT (P49791) Nuclear pore complex protein Nup153 (Nucleoporin Nup153)| (153 kDa nucleoporin) Length = 1468 Score = 27.3 bits (59), Expect = 8.9 Identities = 11/26 (42%), Positives = 13/26 (50%) Frame = -1 Query: 235 GDKLARACCHWQCHSCCLSKLIETWR 158 GDK R W+C CC+S E R Sbjct: 783 GDKFKRPVGSWECPVCCVSNKAEDSR 808 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 66,674,853 Number of Sequences: 219361 Number of extensions: 1446149 Number of successful extensions: 5238 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 4991 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 5224 length of database: 80,573,946 effective HSP length: 111 effective length of database: 56,224,875 effective search space used: 1349397000 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
