>ROK1_EMENI (Q5BET6) ATP-dependent RNA helicase rok1 (EC 3.6.1.-)|
          Length = 742

 Score = 33.5 bits (75), Expect = 0.20
 Identities = 19/43 (44%), Positives = 23/43 (53%)
 Frame = -3

Query: 250 GRGSIPPSLDSSETKLEDAAAGSQKGRGDSSDADAVALRWVQR 122
           GR SIP S D++ TK   A AG +      SDAD   +  VQR
Sbjct: 76  GRSSIPKSSDAATTKGSGAPAGQEGASESDSDADDEPMDEVQR 118

>WIRE_MOUSE (Q6PEV3) WIP-related protein (WASP-interacting protein-related|
           protein)
          Length = 440

 Score = 31.2 bits (69), Expect = 0.99
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = -1

Query: 195 PQPDPKREEEIHLTPTPLRCAGSSERNNPHPIQPLPGQKV 76
           P P P R      TP PL    +   N   P+ P PGQ++
Sbjct: 178 PPPPPGRRANAPPTPLPLHSNKAQAYNREKPLPPTPGQRL 217

>WIRE_HUMAN (Q8TF74) WIP-related protein (WASP-interacting protein-related|
           protein) (WIP-and CR16-homologous protein)
          Length = 440

 Score = 31.2 bits (69), Expect = 0.99
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -1

Query: 195 PQPDPKREEEIHLTPTPLRCAGSSERNNPHPIQPLPGQKV 76
           P P P R      TP P+  + +   N   P+ P PGQ++
Sbjct: 178 PPPPPGRRANAPPTPLPMHSSKAPAYNREKPLPPTPGQRL 217

>PDE4D_DROME (Q9W4T0) cAMP-specific 3',5'-cyclic phosphodiesterase, isoform M|
           (EC 3.1.4.17) (Learning/memory process protein) (Protein
           dunce)
          Length = 903

 Score = 30.8 bits (68), Expect = 1.3
 Identities = 21/65 (32%), Positives = 30/65 (46%)
 Frame = -3

Query: 409 PTVKTRRATLDRFNQLFDWKKEKHPLTWPQICDAIIGGQERLKRQSTAQWGKSGRGSIPP 230
           PT      T    N L    K K    W QI  + +  Q+RLK+ +T+   K    S PP
Sbjct: 43  PTPTAITTTYRSRNLLKATAKVKKKKKWKQI--SFVDDQQRLKQAATSAERKRSTSSAPP 100

Query: 229 SLDSS 215
           +L+S+
Sbjct: 101 ALESN 105

>LAS17_YEAST (Q12446) Proline-rich protein LAS17|
          Length = 633

 Score = 30.4 bits (67), Expect = 1.7
 Identities = 20/53 (37%), Positives = 27/53 (50%)
 Frame = -1

Query: 246 EEAFLRHSILPRQNWRTPQPDPKREEEIHLTPTPLRCAGSSERNNPHPIQPLP 88
           EE   +HS+ P  N   P PDP +    H +P P   A S  ++NP P  P+P
Sbjct: 231 EETHPKHSLPPLPNQFAPLPDPPQ----HNSP-PQNNAPSQPQSNPFPF-PIP 277

>SMOX_HUMAN (Q9NWM0) Spermine oxidase (EC 1.5.3.-) (Polyamine oxidase 1)|
           (PAO-1) (PAOh1)
          Length = 555

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
 Frame = +3

Query: 174 PFWDPAAASSNFVSEESSDGGMLPRPLFPHWAVLCRFRRS*PP-----MMASQICGQ 329
           PFW P   S  FV E+ ++   L  P    +  +C F    PP     +++  ICG+
Sbjct: 375 PFWGPECNSLQFVWEDEAESHTLTYPPELWYRKICGFDVLYPPERYGHVLSGWICGE 431

>HAT2_NEUCR (Q7S7N3) Histone acetyltransferase type B subunit 2 (EC 2.3.1.48)|
          Length = 564

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 2/64 (3%)
 Frame = -3

Query: 298 GQERLKRQSTAQWGKSGRGSIPPSLDSSETKLEDAAAGSQKGRGDSSDADAVA--LRWVQ 125
           G+E  K  S  Q G SGR +     DS     ED +A  QKGRG S         LR V+
Sbjct: 476 GKEAPKEGSRLQDGTSGRDNGDGDDDS-----EDTSASEQKGRGKSKGMSVYESYLRTVE 530

Query: 124 RAEQ 113
            A +
Sbjct: 531 EARR 534

>DPEP3_MOUSE (Q9DA79) Dipeptidase 3 precursor (EC 3.4.13.19) (Membrane-bound|
           dipeptidase 3) (MBD-3)
          Length = 493

 Score = 29.3 bits (64), Expect = 3.7
 Identities = 19/59 (32%), Positives = 26/59 (44%)
 Frame = -1

Query: 195 PQPDPKREEEIHLTPTPLRCAGSSERNNPHPIQPLPGQKVLVVLAPGIRWIGGSGLRLV 19
           PQP   + ++ HL  T L      +R +  P  PLPG    +     I W+  SG R V
Sbjct: 437 PQPQEDQHQDTHLKVTKL--PNILQRASKAPPHPLPGLMATLTSLALILWLCCSGHRAV 493

>GLAS_DROVI (Q24732) Protein glass|
          Length = 598

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 27/94 (28%), Positives = 34/94 (36%)
 Frame = -2

Query: 362 FRLEKGEASIDLAANLRRHHWRSGTPKAAKHCPMGEKWARKHSSVTRFFRDKIGGRRSRI 183
           +R      S   AANL  H  R+ T +    CP+ ++   + SSVT   R   G R  R 
Sbjct: 455 YRCPDCNKSFSQAANLTAHV-RTHTGQKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 513

Query: 182 PKGKXXXXXXXXRCAALGPASGTTPIQSNHYLAR 81
              K            L   SG  P Q    L R
Sbjct: 514 SSCKKSFSDSSTLTKHLRIHSGEKPYQCKLCLLR 547

>SMOX_MOUSE (Q99K82) Spermine oxidase (EC 1.5.3.-) (Polyamine oxidase 1)|
           (PAO-1) (PAOh1)
          Length = 555

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 17/57 (29%), Positives = 26/57 (45%), Gaps = 5/57 (8%)
 Frame = +3

Query: 174 PFWDPAAASSNFVSEESSDGGMLPRPLFPHWAVLCRFRRS*PP-----MMASQICGQ 329
           PFW P   S  FV E+ ++   L  P    +  +C F    PP     +++  ICG+
Sbjct: 375 PFWGPECNSLQFVWEDEAESCTLTYPPELWYRKICGFDVLYPPERYGHVLSGWICGE 431

>SNX41_ASHGO (Q759T1) Sorting nexin-41|
          Length = 603

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
 Frame = -1

Query: 225 SILPRQNWRTPQPDPKREEEIH-LTPTPLR---CAGSSERNNP 109
           SILP  N   P  +P +   +H L PTP R     GS + NNP
Sbjct: 251 SILPTNNLLAPPLNPTKPSPLHLLLPTPPRRTTSYGSPKTNNP 293

>TATR_NPVOP (P22114) Trans-activating transcriptional regulatory protein|
           (Immediate early protein 1) (IE-1)
          Length = 560

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 16/47 (34%), Positives = 23/47 (48%)
 Frame = -3

Query: 286 LKRQSTAQWGKSGRGSIPPSLDSSETKLEDAAAGSQKGRGDSSDADA 146
           L R+STA    +G  +  P    +ET  E  AAG  K +    D+D+
Sbjct: 74  LARESTASEFVAGFSADSPQAQLAETGAETGAAGGSKRKASEVDSDS 120

>GLAS_DROME (P13360) Protein glass|
          Length = 604

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 27/94 (28%), Positives = 34/94 (36%)
 Frame = -2

Query: 362 FRLEKGEASIDLAANLRRHHWRSGTPKAAKHCPMGEKWARKHSSVTRFFRDKIGGRRSRI 183
           +R      S   AANL  H  R+ T +    CP+ ++   + SSVT   R   G R  R 
Sbjct: 465 YRCPDCNKSFSQAANLTAHV-RTHTGQKPFRCPICDRRFSQSSSVTTHMRTHSGERPYRC 523

Query: 182 PKGKXXXXXXXXRCAALGPASGTTPIQSNHYLAR 81
              K            L   SG  P Q    L R
Sbjct: 524 SSCKKSFSDSSTLTKHLRIHSGEKPYQCKLCLLR 557

>NXSC_LATCO (P10455) Short neurotoxin C precursor|
          Length = 83

 Score = 28.9 bits (63), Expect = 4.9
 Identities = 15/43 (34%), Positives = 21/43 (48%), Gaps = 6/43 (13%)
 Frame = -2

Query: 335 IDLAANLRRHHWRSGTPKAAKHCPMGE------KWARKHSSVT 225
           +DLA   R ++ +S  PK  K CP GE      +W     S+T
Sbjct: 16  LDLAYTRRCYNQQSSQPKTTKSCPPGENSCYNKQWRDHRGSIT 58

>DEK_RAT (Q6AXS3) Protein DEK|
          Length = 378

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 15/47 (31%), Positives = 26/47 (55%)
 Frame = -3

Query: 295 QERLKRQSTAQWGKSGRGSIPPSLDSSETKLEDAAAGSQKGRGDSSD 155
           +E+ K+++T +  KS + +     DSS TK    ++  + G  DSSD
Sbjct: 265 KEKAKQKATTKSKKSVKSANVKKADSSTTKKNQNSSKKESGSEDSSD 311

>HAT2_ASPFU (Q4WEI5) Histone acetyltransferase type B subunit 2 (EC 2.3.1.48)|
          Length = 436

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 132 QRSATASASDESPLPFWDPAAASSNFVSEESSDGGMLPRPLFPH 263
           + +  ASAS +  + FWD + A      E++ DG   P  LF H
Sbjct: 342 EEAVLASASYDRKIAFWDLSRAGEEQTPEDAQDGP--PELLFQH 383

>ADT_CHLRE (P27080) ADP,ATP carrier protein (ADP/ATP translocase) (Adenine|
           nucleotide translocator) (ANT)
          Length = 308

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 24/84 (28%), Positives = 37/84 (44%), Gaps = 2/84 (2%)
 Frame = -3

Query: 409 PTVKTRRATLDRFNQLFDWKKEKHPLTWPQICDAIIGGQERLKRQSTAQWGKSGRGSIP- 233
           PT     A  D+F ++F + K+K    W         G       + A  G +G  S+  
Sbjct: 84  PTQALNFAFKDKFKRMFGFNKDKEYWKW-------FAG-------NMASGGAAGAVSLSF 129

Query: 232 -PSLDSSETKLEDAAAGSQKGRGD 164
             SLD + T+L + A  ++KG GD
Sbjct: 130 VYSLDYARTRLANDAKSAKKGGGD 153

>IF34_YEAST (Q04067) Eukaryotic translation initiation factor 3 RNA-binding|
           subunit (eIF-3 RNA-binding subunit) (eIF3 p33)
           (Translation initiation factor eIF3, p33 subunit)
          Length = 274

 Score = 28.5 bits (62), Expect = 6.4
 Identities = 20/80 (25%), Positives = 41/80 (51%)
 Frame = -1

Query: 375 DSINFSIGKRRSIH*PGRKSATPSLAVRNA*SGKALPNGGKVGEEAFLRHSILPRQNWRT 196
           + ++ S+ +R++ H  G +  +P+        G +     ++GEE  LR S    +NW+ 
Sbjct: 43  EKVHKSVAERKNWHKYGSEKGSPA--------GPSAVTA-RLGEEVELRLS----RNWKQ 89

Query: 195 PQPDPKREEEIHLTPTPLRC 136
            + +  ++E+  LT T L+C
Sbjct: 90  AEEERIQKEKASLTKTGLQC 109

>YNJ6_CAEEL (P34550) Hypothetical protein R10E11.6|
          Length = 349

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 12/36 (33%), Positives = 20/36 (55%)
 Frame = -1

Query: 258 GKVGEEAFLRHSILPRQNWRTPQPDPKREEEIHLTP 151
           GK+   AF+  S+LPR++ R  +    +E   H +P
Sbjct: 162 GKIKPSAFIPTSLLPRRSMRKKKESDSKEVSAHNSP 197

>PTPRR_RAT (O08617) Receptor-type tyrosine-protein phosphatase R precursor (EC|
           3.1.3.48) (Protein-tyrosine phosphatase PCPTP1)
           (Tyrosine phosphatase CBPTP) (PC12-PTP1)
          Length = 656

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -1

Query: 186 DPKREEEIHLTPTPLRCAGSSERNNPHPIQPLPGQKVLVVL 64
           D ++ +EIHL+P  L+ A S  +     +QP    KVL V+
Sbjct: 261 DKEKNQEIHLSPIALQQAQSEAKAAHSMVQPDQAPKVLNVV 301

>E1A_ADES7 (P06499) Early E1A 28 kDa protein|
          Length = 266

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = -1

Query: 192 QPDPKREEEIHLTPTPLRCAGSSERNNPHPIQPLPGQKVLV 70
           +PD    +  H +P  LRC    +   P P++  PG++  V
Sbjct: 200 EPDSTTADSNHGSPPTLRCTPPRDLPRPVPVKASPGKRPAV 240

>PTPRR_HUMAN (Q15256) Receptor-type tyrosine-protein phosphatase R precursor (EC|
           3.1.3.48) (Protein-tyrosine phosphatase PCPTP1)
           (NC-PTPCOM1) (Ch-1PTPase)
          Length = 657

 Score = 28.1 bits (61), Expect = 8.3
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = -1

Query: 186 DPKREEEIHLTPTPLRCAGSSERNNPHPIQPLPGQKVLVVL 64
           D ++ +EIHL+P  L+ A S  +     +QP    KVL V+
Sbjct: 262 DKEKNQEIHLSPITLQPALSEAKTVHSMVQPEQAPKVLNVV 302


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 65,754,608
Number of Sequences: 219361
Number of extensions: 1497777
Number of successful extensions: 5707
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 5446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5701
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 2169600302
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)