Clone Information

BLAST Search Result

Clone Name	bastl42g07
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ATY1_ARATH (Q9LT02) Putative cation-transporting ATPase (EC 3.6....	57	3e-08
2	CRF1_ASPFU (Q8J0P4) Probable glycosidase crf1 precursor (EC 3.2....	37	0.022
3	DUT_HUMAN (P33316) Deoxyuridine 5'-triphosphate nucleotidohydrol...	33	0.41
4	CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long...	32	0.53
5	MSA2_PLAFG (P19260) Merozoite surface antigen 2 precursor (MSA-2...	32	0.70
6	PTN18_HUMAN (Q99952) Tyrosine-protein phosphatase non-receptor t...	31	1.6
7	IF2_SYMTH (Q67P86) Translation initiation factor IF-2	31	1.6
8	CN004_HUMAN (Q9H1B7) Protein C14orf4	30	2.0
9	TRX_DROME (P20659) Protein trithorax	30	2.0
10	EGLN1_MOUSE (Q91YE3) Egl nine homolog 1 (EC 1.14.11.-) (Hypoxia-...	30	2.7
11	CNOT3_MOUSE (Q8K0V4) CCR4-NOT transcription complex subunit 3 (C...	30	2.7
12	MYPC3_HUMAN (Q14896) Myosin-binding protein C, cardiac-type (Car...	30	2.7
13	CO9A3_CHICK (P32017) Collagen alpha-3(IX) chain precursor	30	3.5
14	APBA1_RAT (O35430) Amyloid beta A4 precursor protein-binding fam...	30	3.5
15	IRS2_HUMAN (Q9Y4H2) Insulin receptor substrate 2 (IRS-2)	29	4.5
16	XRCC1_RAT (Q9ESZ0) DNA-repair protein XRCC1 (X-ray repair cross-...	29	4.5
17	RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats prote...	29	4.5
18	CNGB1_HUMAN (Q14028) Cyclic nucleotide-gated cation channel 4 (C...	29	4.5
19	YDBA_ECOLI (P33666) Hypothetical protein ydbA	29	4.5
20	SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains prote...	29	4.5
21	KLF13_HUMAN (Q9Y2Y9) Krueppel-like factor 13 (Transcription fact...	29	4.5
22	HEMA_IAHSW (P26103) Hemagglutinin precursor [Contains: Hemagglut...	29	4.5
23	HEMA_IAHSP (P26102) Hemagglutinin precursor [Contains: Hemagglut...	29	4.5
24	HEMA_IAHPR (P26101) Hemagglutinin precursor [Contains: Hemagglut...	29	4.5
25	HEMA_IAHLO (P26099) Hemagglutinin precursor [Contains: Hemagglut...	29	4.5
26	HEMA_IAHLE (P26098) Hemagglutinin precursor [Contains: Hemagglut...	29	4.5
27	HEMA_IAHC7 (P26095) Hemagglutinin precursor [Contains: Hemagglut...	29	4.5
28	HEMA_IAHC6 (P26094) Hemagglutinin precursor [Contains: Hemagglut...	29	4.5
29	JIP2_HUMAN (Q13387) C-jun-amino-terminal kinase-interacting prot...	29	5.9
30	PUM2_MOUSE (Q80U58) Pumilio homolog 2	29	5.9
31	MECP2_MACFA (Q95LG8) Methyl-CpG-binding protein 2 (MeCP-2 protei...	29	5.9
32	MECP2_HUMAN (P51608) Methyl-CpG-binding protein 2 (MeCP-2 protei...	29	5.9
33	DBP_RAT (P16443) D site-binding protein (Albumin D box-binding p...	29	5.9
34	DBP_MOUSE (Q60925) D site-binding protein (Albumin D box-binding...	29	5.9
35	PO121_HUMAN (Q9Y2N3) Nuclear envelope pore membrane protein POM ...	29	5.9
36	HEMA_IAHNN (P26100) Hemagglutinin precursor [Contains: Hemagglut...	29	5.9
37	HEMA_IAHDE (P26097) Hemagglutinin precursor [Contains: Hemagglut...	29	5.9
38	HEMA_IAHCD (P26096) Hemagglutinin precursor [Contains: Hemagglut...	29	5.9
39	ATX1_HUMAN (P54253) Ataxin-1 (Spinocerebellar ataxia type 1 prot...	29	5.9
40	HEMA_IAFPR (P03459) Hemagglutinin precursor [Contains: Hemagglut...	29	5.9
41	E1BL_ADE05 (P03243) E1B protein, large T-antigen	29	5.9
42	RGS14_MOUSE (P97492) Regulator of G-protein signaling 14 (RGS14)...	24	7.5
43	PT1_STRCO (Q9KZP1) Phosphoenolpyruvate-protein phosphotransferas...	28	7.7
44	NOLA1_BRARE (Q7ZVE0) H/ACA ribonucleoprotein complex subunit 1 (...	28	7.7
45	MYCN_HUMAN (P04198) N-myc proto-oncogene protein	28	7.7
46	FLA10_ARATH (Q9LZX4) Fasciclin-like arabinogalactan protein 10 p...	28	7.7
47	CYLN2_RAT (O55156) Cytoplasmic linker protein 2 (Cytoplasmic lin...	28	7.7
48	WASIP_HUMAN (O43516) Wiskott-Aldrich syndrome protein-interactin...	28	7.7
49	HIC1_MOUSE (Q9R1Y5) Hypermethylated in cancer 1 protein (Hic-1)	28	7.7
50	HXD1_HUMAN (Q9GZZ0) Homeobox protein Hox-D1	28	7.7
51	TCF20_HUMAN (Q9UGU0) Transcription factor 20 (Stromelysin 1 PDGF...	28	7.7
52	CF055_MOUSE (Q9CR26) Protein C6orf55 homolog	28	7.7

>ATY1_ARATH (Q9LT02) Putative cation-transporting ATPase (EC 3.6.3.-)|
          Length = 1179

 Score = 56.6 bits (135), Expect = 3e-08
 Identities = 30/67 (44%), Positives = 35/67 (52%)
 Frame = +1

Query: 238 MARFEVNGKSVEGVDLLRRRHWTARLDFWPFXXXXXXXXXXXXXXXDFTDALVILGVLSA 417
           M+ F V GK VE VDL R++    RLD WPF               DF+DA + LG LSA
Sbjct: 1   MSSFRVGGKVVEKVDLCRKKQLVWRLDVWPFAILYTVWLTTIVPSIDFSDACIALGGLSA 60

Query: 418 SHILAFL 438
            HIL  L
Sbjct: 61  FHILVLL 67

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>CRF1_ASPFU (Q8J0P4) Probable glycosidase crf1 precursor (EC 3.2.-.-) (Crh-like|
           protein) (Allergen Asp f 9)
          Length = 395

 Score = 37.0 bits (84), Expect = 0.022
 Identities = 23/61 (37%), Positives = 26/61 (42%)
 Frame = -3

Query: 278 TPSTDLPFTSNRAMPAPRPPGSEGRPAGSPGDAQIGSRCESEKGAAGGSLEGFTSSVSTG 99
           TPST    TS +A P P    S    + S      G    S  G+  GS  G  SS STG
Sbjct: 295 TPSTSTLATSTKATPTPSGTSSGSNSSSSAEPTTTGGTGSSNTGSGSGSGSGSGSSSSTG 354

Query: 98  S 96
           S
Sbjct: 355 S 355

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>DUT_HUMAN (P33316) Deoxyuridine 5'-triphosphate nucleotidohydrolase,|
           mitochondrial precursor (EC 3.6.1.23) (dUTPase) (dUTP
           pyrophosphatase)
          Length = 252

 Score = 32.7 bits (73), Expect = 0.41
 Identities = 19/39 (48%), Positives = 21/39 (53%), Gaps = 3/39 (7%)
 Frame = -3

Query: 245 RAMPAPRPPGSE---GRPAGSPGDAQIGSRCESEKGAAG 138
           RA PAPRPP ++    RP  S G    G R  S  GAAG
Sbjct: 39  RARPAPRPPAAQHGIPRPLSSAGRLSQGCRGASTVGAAG 77

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>CO7A1_HUMAN (Q02388) Collagen alpha-1(VII) chain precursor (Long-chain collagen)|
            (LC collagen)
          Length = 2944

 Score = 32.3 bits (72), Expect = 0.53
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 239  MPAPRPPGSEGRPAGSPGDAQIG-SRCESEKGAAGG 135
            +P P  P  E  P G+PG A +G    + EKGA GG
Sbjct: 2282 LPGPVGPKGEPGPTGAPGQAVVGLPGAKGEKGAPGG 2317

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>MSA2_PLAFG (P19260) Merozoite surface antigen 2 precursor (MSA-2) (Allelic|
           form 2) (Membrane protein PF7)
          Length = 287

 Score = 32.0 bits (71), Expect = 0.70
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 1/51 (1%)
 Frame = -3

Query: 245 RAMPAPRPP-GSEGRPAGSPGDAQIGSRCESEKGAAGGSLEGFTSSVSTGS 96
           R+M    PP G+ G   GS G +  GS   S  G+AGGS  G     + GS
Sbjct: 41  RSMTESNPPTGASGSAGGSAGGSAGGSAGGSAGGSAGGSAGGSAGGSAGGS 91

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>PTN18_HUMAN (Q99952) Tyrosine-protein phosphatase non-receptor type 18 (EC|
           3.1.3.48) (Brain-derived phosphatase)
          Length = 458

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 4/57 (7%)
 Frame = -3

Query: 254 TSNRAMPAPRPPGSEGRP---AGSPGDAQIGSRCESEK-GAAGGSLEGFTSSVSTGS 96
           T    +  PRPPG   R     GSPG A   +  E +K GA  G+  G  +   TG+
Sbjct: 322 TPQALLAIPRPPGGVLRSISVPGSPGHAMADTYAEEQKRGAPAGAGSGTQTGTGTGA 378

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>IF2_SYMTH (Q67P86) Translation initiation factor IF-2|
          Length = 1044

 Score = 30.8 bits (68), Expect = 1.6
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -3

Query: 275 PSTDLPFTSNRAMPAPRPPGSEGRPAGS 192
           P  + P TS  + P P  PG   RPAGS
Sbjct: 281 PQAEAPQTSGPSRPVPAGPGQPARPAGS 308

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>CN004_HUMAN (Q9H1B7) Protein C14orf4|
          Length = 796

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 20/57 (35%), Positives = 25/57 (43%), Gaps = 11/57 (19%)
 Frame = -3

Query: 248 NRAMPAPRPPGSEGRPA---GSPGDAQIGSRCESEKGA--------AGGSLEGFTSS 111
           +R  P P PPG+ G PA   G+PG +   S   S   +        AGG   G  SS
Sbjct: 281 SRGPPTPAPPGAPGGPACLGGTPGVSATSSSASSSTSSSVAEVGVGAGGKRPGSVSS 337

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>TRX_DROME (P20659) Protein trithorax|
          Length = 3726

 Score = 30.4 bits (67), Expect = 2.0
 Identities = 17/50 (34%), Positives = 23/50 (46%), Gaps = 3/50 (6%)
 Frame = -3

Query: 236 PAPRPPGSEGRPAGSPGDAQIGSRC---ESEKGAAGGSLEGFTSSVSTGS 96
           PAP      G  +GS    + G+ C   E +    G S+ G T+S S GS
Sbjct: 37  PAPESQQPSGSGSGSSAAREKGNNCDNDEDDNAPGGASISGNTASSSAGS 86

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>EGLN1_MOUSE (Q91YE3) Egl nine homolog 1 (EC 1.14.11.-) (Hypoxia-inducible|
           factor prolyl hydroxylase 2) (HIF-prolyl hydroxylase 2)
           (HIF-PH2) (HPH-2) (SM-20)
          Length = 400

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 15/41 (36%), Positives = 18/41 (43%)
 Frame = -3

Query: 245 RAMPAPRPPGSEGRPAGSPGDAQIGSRCESEKGAAGGSLEG 123
           RA PAP  P     P G+PG A+ G        AA   + G
Sbjct: 65  RAQPAPAQPRVAPPPGGAPGAARAGGAARRGDSAAASRVPG 105

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>CNOT3_MOUSE (Q8K0V4) CCR4-NOT transcription complex subunit 3 (CCR4-associated|
           factor 3)
          Length = 751

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 2/58 (3%)
 Frame = -3

Query: 260 PFTSNRAMPAPRPPGSEGRPAGSPGDAQIGSRCESEKGAAGGS--LEGFTSSVSTGSD 93
           P  S  +   PRPP ++  P+G  G    GS   S  G  GG+    G TS  S  +D
Sbjct: 378 PNASGPSNAQPRPPSAQ--PSGGSGGGSGGSSSNSNSGTGGGAGKQNGATSYSSVVAD 433

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>MYPC3_HUMAN (Q14896) Myosin-binding protein C, cardiac-type (Cardiac MyBP-C)|
           (C-protein, cardiac muscle isoform)
          Length = 1274

 Score = 30.0 bits (66), Expect = 2.7
 Identities = 15/41 (36%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
 Frame = -3

Query: 236 PAPRPPGSEGRPAGSPGD-AQIGSRCESEKGAAGGSLEGFT 117
           PAP P  + G P  +P   A++G    S KG++  +L G T
Sbjct: 106 PAPAPAEATGAPGEAPAPAAELGESAPSPKGSSSAALNGPT 146

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>CO9A3_CHICK (P32017) Collagen alpha-3(IX) chain precursor|
          Length = 675

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 18/40 (45%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 118 VNPSKLP-PAAPFSDSHRDPI*ASPGDPAGLPSDPGGRGA 234
           V P   P P  P   S +D I   PG P+GLP  PG +GA
Sbjct: 24  VGPQGPPGPRGPPGPSGKDGIDGEPG-PSGLPGPPGPKGA 62

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>APBA1_RAT (O35430) Amyloid beta A4 precursor protein-binding family A member|
           1 (Neuron-specific X11 protein) (Neuronal
           Munc18-1-interacting protein 1) (Mint-1) (Adapter
           protein X11alpha)
          Length = 839

 Score = 29.6 bits (65), Expect = 3.5
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = -3

Query: 230 PRPPGSEGRPAGSPGDAQIGSRCESEK 150
           P P G + R  G+PG +++G R   EK
Sbjct: 318 PAPAGQQQRVVGTPGGSEVGQRYSKEK 344

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>IRS2_HUMAN (Q9Y4H2) Insulin receptor substrate 2 (IRS-2)|
          Length = 1338

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 16/42 (38%), Positives = 21/42 (50%)
 Frame = +1

Query: 121  NPSKLPPAAPFSDSHRDPI*ASPGDPAGLPSDPGGRGAGMAR 246
            +P +L PA P +   R     +PG P GL   PG  G+ M R
Sbjct: 1203 SPRQLQPAPPLAPQGRP---WTPGQPGGLVGCPGSGGSPMRR 1241

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>XRCC1_RAT (Q9ESZ0) DNA-repair protein XRCC1 (X-ray repair cross-complementing|
           protein 1)
          Length = 631

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 20/60 (33%), Positives = 28/60 (46%)
 Frame = +1

Query: 100 PVETELVNPSKLPPAAPFSDSHRDPI*ASPGDPAGLPSDPGGRGAGMARFEVNGKSVEGV 279
           P   +L  PS+ P A P S   +  +   PG P G  ++P G  AG       GK ++GV
Sbjct: 270 PKRPKLPVPSRTPAATPASTPAQKAV---PGKPRGEGTEPRGARAGPQEL---GKILQGV 323

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>RERE_RAT (Q62901) Arginine-glutamic acid dipeptide repeats protein|
           (Atrophin-1-related protein)
          Length = 1559

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = -3

Query: 275 PSTDLPFTSNRAMPAPRPPGSEGRPAGSPGDAQIGSRCESEKGAAGGSL 129
           PST  P T+    P P P  +   P GSP  +Q  ++ +S    A  +L
Sbjct: 750 PSTAPPGTTQLPTPGPTPSATTVPPQGSPATSQPPNQTQSTVAPAAHTL 798

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>CNGB1_HUMAN (Q14028) Cyclic nucleotide-gated cation channel 4 (CNG channel 4)|
           (CNG-4) (CNG4) (Cyclic nucleotide-gated cation channel
           modulatory subunit)
          Length = 909

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 16/30 (53%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = -3

Query: 236 PAPR-PPGSEGRPAGSPGDAQIGSRCESEK 150
           PAPR PP   G P  SP  A +GS CE E+
Sbjct: 842 PAPRTPPEPPGSPPSSPPPASLGS-CEGEE 870

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>YDBA_ECOLI (P33666) Hypothetical protein ydbA|
          Length = 2003

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +1

Query: 121 NPSKLPPAAPFSDSHRDPI*ASPGDPAGLPSDP 219
           N S LPP  P  +S   P+  +PG    +P DP
Sbjct: 98  NNSPLPPTPPDDESDDTPVPPTPGGDEIIPDDP 130

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>SHAN1_RAT (Q9WV48) SH3 and multiple ankyrin repeat domains protein 1 (Shank1)|
            (GKAP/SAPAP-interacting protein) (SPANK-1) (Synamon)
            (Somatostatin receptor-interacting protein)
            (SSTR-interacting protein) (SSTRIP)
          Length = 2167

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 2/50 (4%)
 Frame = -3

Query: 263  LPFTSNRAMPAPRPPGSEGRPAGS--PGDAQIGSRCESEKGAAGGSLEGF 120
            LP + ++  PAPRP      P+G   PG   I S   S  G AGGS + F
Sbjct: 2010 LPASDHKVSPAPRPSSLPILPSGPIYPGLFDIRS---SPTGGAGGSTDPF 2056

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>KLF13_HUMAN (Q9Y2Y9) Krueppel-like factor 13 (Transcription factor BTEB3)|
           (Basic transcription element-binding protein 3)
           (BTE-binding protein 3) (RANTES factor of late activated
           T-lymphocytes 1) (RFLAT-1) (Transcription factor NSLP1)
           (Novel Sp1-like zin
          Length = 288

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 20/54 (37%), Positives = 22/54 (40%), Gaps = 8/54 (14%)
 Frame = -3

Query: 236 PAPRP--PGSEGRPAGSPGDA------QIGSRCESEKGAAGGSLEGFTSSVSTG 99
           PAP P  PG+EG  A  P  A      + G   E E G AG    G    V  G
Sbjct: 101 PAPEPTSPGAEGAAAAPPSPAWSEPEPEAGLEPEREPGPAGSGEPGLRQRVRRG 154

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>HEMA_IAHSW (P26103) Hemagglutinin precursor [Contains: Hemagglutinin HA1|
           chain; Hemagglutinin HA2 chain]
          Length = 570

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -3

Query: 275 PSTDLPFTSNRAMPAP-RPPGSEGRPAGSPGDAQIGSRCESEKGAAGGSL 129
           P+  + F+ N A  AP R     G+  G   DAQ+ + CE E    GG++
Sbjct: 248 PNDTVTFSFNGAFIAPDRASFLRGKSLGIKSDAQLDNNCEGECYHIGGTI 297

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>HEMA_IAHSP (P26102) Hemagglutinin precursor [Contains: Hemagglutinin HA1|
           chain; Hemagglutinin HA2 chain]
          Length = 570

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -3

Query: 275 PSTDLPFTSNRAMPAP-RPPGSEGRPAGSPGDAQIGSRCESEKGAAGGSL 129
           P+  + F+ N A  AP R     G+  G   DAQ+ + CE E    GG++
Sbjct: 248 PNDTVTFSFNGAFIAPDRASFLRGKSLGIQSDAQLDNNCEGECYHIGGTI 297

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>HEMA_IAHPR (P26101) Hemagglutinin precursor [Contains: Hemagglutinin HA1|
           chain; Hemagglutinin HA2 chain]
          Length = 570

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -3

Query: 275 PSTDLPFTSNRAMPAP-RPPGSEGRPAGSPGDAQIGSRCESEKGAAGGSL 129
           P+  + F+ N A  AP R     G+  G   DAQ+ + CE E    GG++
Sbjct: 248 PNDTVTFSFNGAFIAPDRASFLRGKSLGIQSDAQLDNNCEGECYHIGGTI 297

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>HEMA_IAHLO (P26099) Hemagglutinin precursor [Contains: Hemagglutinin HA1|
           chain; Hemagglutinin HA2 chain]
          Length = 570

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -3

Query: 275 PSTDLPFTSNRAMPAP-RPPGSEGRPAGSPGDAQIGSRCESEKGAAGGSL 129
           P+  + F+ N A  AP R     G+  G   DAQ+ + CE E    GG++
Sbjct: 248 PNDTVTFSFNGAFIAPDRASFLRGKSLGIQSDAQLDNNCEGECYHIGGTI 297

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>HEMA_IAHLE (P26098) Hemagglutinin precursor [Contains: Hemagglutinin HA1|
           chain; Hemagglutinin HA2 chain]
          Length = 570

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -3

Query: 275 PSTDLPFTSNRAMPAP-RPPGSEGRPAGSPGDAQIGSRCESEKGAAGGSL 129
           P+  + F+ N A  AP R     G+  G   DAQ+ + CE E    GG++
Sbjct: 248 PNDTVTFSFNGAFIAPDRASFLRGKSLGIQSDAQLDNNCEGECYHIGGTI 297

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>HEMA_IAHC7 (P26095) Hemagglutinin precursor [Contains: Hemagglutinin HA1|
           chain; Hemagglutinin HA2 chain]
          Length = 570

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -3

Query: 275 PSTDLPFTSNRAMPAP-RPPGSEGRPAGSPGDAQIGSRCESEKGAAGGSL 129
           P+  + F+ N A  AP R     G+  G   DAQ+ + CE E    GG++
Sbjct: 248 PNDTVTFSFNGAFIAPDRASFLRGKSLGIQSDAQLDNNCEGECYHIGGTI 297

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>HEMA_IAHC6 (P26094) Hemagglutinin precursor [Contains: Hemagglutinin HA1|
           chain; Hemagglutinin HA2 chain]
          Length = 570

 Score = 29.3 bits (64), Expect = 4.5
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -3

Query: 275 PSTDLPFTSNRAMPAP-RPPGSEGRPAGSPGDAQIGSRCESEKGAAGGSL 129
           P+  + F+ N A  AP R     G+  G   DAQ+ + CE E    GG++
Sbjct: 248 PNDTVTFSFNGAFIAPDRASFLRGKSLGIQSDAQLDNNCEGECYHIGGTI 297

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>JIP2_HUMAN (Q13387) C-jun-amino-terminal kinase-interacting protein 2|
           (JNK-interacting protein 2) (JIP-2) (JNK MAP kinase
           scaffold protein 2) (Islet-brain-2) (IB-2)
           (Mitogen-activated protein kinase 8-interacting protein
           2)
          Length = 824

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 17/36 (47%), Positives = 18/36 (50%)
 Frame = -3

Query: 236 PAPRPPGSEGRPAGSPGDAQIGSRCESEKGAAGGSL 129
           PAPRPPG    PAG  G AQ     E+  G  G  L
Sbjct: 375 PAPRPPGEPVSPAG--GAAQDSQDPEAAAGPGGVEL 408

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>PUM2_MOUSE (Q80U58) Pumilio homolog 2|
          Length = 1066

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
 Frame = -3

Query: 197 GSPGDAQIGSRCESEKGAA-GGSLEGFTSSVSTGS 96
           G PG A +G    S  GAA G +L GF SSV + +
Sbjct: 544 GQPGSASLGFGSGSSLGAAIGSALSGFGSSVGSSA 578

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>MECP2_MACFA (Q95LG8) Methyl-CpG-binding protein 2 (MeCP-2 protein) (MeCP2)|
          Length = 486

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = -3

Query: 278 TPSTDLPFTSNRAMPAPRPPGSEGRPAGSPGDAQIGSR-CESEKGAAGGSLE 126
           +P   +P       P P P  SE  P   P    + S  C+ EK   GGSLE
Sbjct: 375 SPKAPVPLLPPLPPPPPEPESSED-PTSPPEPQDLSSSVCKEEKMPRGGSLE 425

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>MECP2_HUMAN (P51608) Methyl-CpG-binding protein 2 (MeCP-2 protein) (MeCP2)|
          Length = 486

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 18/52 (34%), Positives = 22/52 (42%), Gaps = 1/52 (1%)
 Frame = -3

Query: 278 TPSTDLPFTSNRAMPAPRPPGSEGRPAGSPGDAQIGSR-CESEKGAAGGSLE 126
           +P   +P       P P P  SE  P   P    + S  C+ EK   GGSLE
Sbjct: 375 SPKAPVPLLPPLPPPPPEPESSED-PTSPPEPQDLSSSVCKEEKMPRGGSLE 425

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>DBP_RAT (P16443) D site-binding protein (Albumin D box-binding protein)|
           (Albumin D-element-binding protein) (D site albumin
           promoter-binding protein 1)
          Length = 325

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 22/52 (42%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = -3

Query: 260 PFTSNRAMPAPRP-PGS--EGRPAGSPGDAQIGSRCESEKGAAGGSLEGFTS 114
           P  S    PAP P PGS     P  SPG A       +  GAAGG   G TS
Sbjct: 140 PAPSPARTPAPSPGPGSCSSSSPRSSPGHAP----ARATLGAAGGHRAGLTS 187

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>DBP_MOUSE (Q60925) D site-binding protein (Albumin D box-binding protein)|
           (Albumin D-element-binding protein)
          Length = 325

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 22/52 (42%), Positives = 23/52 (44%), Gaps = 3/52 (5%)
 Frame = -3

Query: 260 PFTSNRAMPAPRP-PGS--EGRPAGSPGDAQIGSRCESEKGAAGGSLEGFTS 114
           P  S    PAP P PGS     P  SPG A       +  GAAGG   G TS
Sbjct: 140 PAPSPARTPAPSPGPGSCSSSSPRSSPGHAP----ARATLGAAGGHRAGLTS 187

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>PO121_HUMAN (Q9Y2N3) Nuclear envelope pore membrane protein POM 121 (Pore|
            membrane protein of 121 kDa) (P145)
          Length = 1229

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -3

Query: 278  TPSTDLPFTSNRAMPAPRPPGSEGRPAGSPGDAQ 177
            TP+ ++PF S+   P P  PG+  +PA    + Q
Sbjct: 922  TPTFNIPFGSSAKSPLPSYPGANPQPAFGAAEGQ 955

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>HEMA_IAHNN (P26100) Hemagglutinin precursor [Contains: Hemagglutinin HA1|
           chain; Hemagglutinin HA2 chain]
          Length = 570

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -3

Query: 275 PSTDLPFTSNRAMPAP-RPPGSEGRPAGSPGDAQIGSRCESEKGAAGGSL 129
           P+  + F+ N A  AP R     G+  G   DAQ+ + CE E    GG++
Sbjct: 248 PNDTVNFSFNGAFIAPDRASFLRGKSLGIQSDAQLDNNCEGECYHIGGTI 297

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>HEMA_IAHDE (P26097) Hemagglutinin precursor [Contains: Hemagglutinin HA1|
           chain; Hemagglutinin HA2 chain]
          Length = 570

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -3

Query: 275 PSTDLPFTSNRAMPAP-RPPGSEGRPAGSPGDAQIGSRCESEKGAAGGSL 129
           P+  + F+ N A  AP R     G+  G   DAQ+ + CE E    GG++
Sbjct: 248 PNDTVNFSFNGAFIAPDRASFLRGKSLGIQSDAQLDNNCEGECYHIGGTI 297

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>HEMA_IAHCD (P26096) Hemagglutinin precursor [Contains: Hemagglutinin HA1|
           chain; Hemagglutinin HA2 chain]
          Length = 570

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 17/50 (34%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -3

Query: 275 PSTDLPFTSNRAMPAP-RPPGSEGRPAGSPGDAQIGSRCESEKGAAGGSL 129
           P+  + F+ N A  AP R     G+  G   DAQ+ + CE E    GG++
Sbjct: 248 PNDTVNFSFNGAFIAPDRASFLRGKSLGIQSDAQLDNNCEGECYHIGGTI 297

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>ATX1_HUMAN (P54253) Ataxin-1 (Spinocerebellar ataxia type 1 protein)|
          Length = 816

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 20/45 (44%), Positives = 22/45 (48%)
 Frame = +1

Query: 139 PAAPFSDSHRDPI*ASPGDPAGLPSDPGGRGAGMARFEVNGKSVE 273
           P  P SD+HR          A LP +PGGRG G  R    G SVE
Sbjct: 31  PTLP-SDNHRVE------GTAWLPGNPGGRGHGGGRHGPAGTSVE 68

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>HEMA_IAFPR (P03459) Hemagglutinin precursor [Contains: Hemagglutinin HA1|
           chain; Hemagglutinin HA2 chain]
          Length = 563

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
 Frame = -3

Query: 275 PSTDLPFTSNRAMPAP-RPPGSEGRPAGSPGDAQIGSRCESEKGAAGGSL 129
           P+  + F+ N A  AP R     G+  G   D Q+ + CE E   +GG++
Sbjct: 248 PNDTVTFSFNGAFIAPNRASFLRGKSMGIQSDVQVDANCEGECYHSGGTI 297

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>E1BL_ADE05 (P03243) E1B protein, large T-antigen|
          Length = 496

 Score = 28.9 bits (63), Expect = 5.9
 Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 7/51 (13%)
 Frame = -3

Query: 227 RPPGSEGRPAGSPGDAQIGSRCESEKGAA-------GGSLEGFTSSVSTGS 96
           R P   G PAG  G A + S CE+++  A       G + +G  ++ + GS
Sbjct: 4   RNPSERGVPAGFSGHASVESGCETQESPATVVFRPPGDNTDGGAAAAAGGS 54

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>RGS14_MOUSE (P97492) Regulator of G-protein signaling 14 (RGS14)|
           (RAP1/RAP2-interacting protein)
          Length = 547

 Score = 24.3 bits (51), Expect(2) = 7.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -2

Query: 114 LGLDGIGSAAGVRRWPCGRPMREGF 40
           LG++ +G    +   PCGRP+R+ F
Sbjct: 221 LGVEELGQLP-LAEGPCGRPLRKSF 244



 Score = 22.7 bits (47), Expect(2) = 7.5
 Identities = 8/16 (50%), Positives = 11/16 (68%)
 Frame = -3

Query: 215 SEGRPAGSPGDAQIGS 168
           +EGRP   PG + +GS
Sbjct: 188 AEGRPLREPGSSHLGS 203

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>PT1_STRCO (Q9KZP1) Phosphoenolpyruvate-protein phosphotransferase (EC|
           2.7.3.9) (Phosphotransferase system, enzyme I)
          Length = 556

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
 Frame = +1

Query: 154 SDSHRDPI*ASPGDPAGLPS--DPGGRGAGMARFE 252
           SD H+ P+ A+ G PA +P+  + G  G G+ R E
Sbjct: 256 SDGHKVPLLANIGGPADVPAAVEAGAEGVGLFRTE 290

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>NOLA1_BRARE (Q7ZVE0) H/ACA ribonucleoprotein complex subunit 1 (Nucleolar|
           protein family A member 1)
          Length = 226

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 16/41 (39%), Positives = 18/41 (43%), Gaps = 4/41 (9%)
 Frame = -3

Query: 230 PRPPGSEGRP----AGSPGDAQIGSRCESEKGAAGGSLEGF 120
           PRPPG +G P     G  G    G      +GA GG   GF
Sbjct: 153 PRPPGEKGPPRGGRGGGGGRGGRGGGFRGGRGANGGGRGGF 193

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>MYCN_HUMAN (P04198) N-myc proto-oncogene protein|
          Length = 464

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 16/46 (34%), Positives = 20/46 (43%)
 Frame = -3

Query: 275 PSTDLPFTSNRAMPAPRPPGSEGRPAGSPGDAQIGSRCESEKGAAG 138
           P+   PF  N+  PAP P      PA  P  A  G+   +  GA G
Sbjct: 189 PAVVFPFPVNKREPAPVPAAPASAPAAGPAVAS-GAGIAAPAGAPG 233

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>FLA10_ARATH (Q9LZX4) Fasciclin-like arabinogalactan protein 10 precursor|
          Length = 422

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = -3

Query: 251 SNRAMPAPRPPGSEGRPAGSPGDAQIGSRCESEKGAA 141
           S  A   P PP  E  P G+P D+   S   + K AA
Sbjct: 364 SPTAASPPAPPVDESSPEGAPSDSPTSSENSNAKNAA 400

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>CYLN2_RAT (O55156) Cytoplasmic linker protein 2 (Cytoplasmic linker protein|
           115) (CLIP-115)
          Length = 1046

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 14/35 (40%), Positives = 18/35 (51%)
 Frame = -3

Query: 227 RPPGSEGRPAGSPGDAQIGSRCESEKGAAGGSLEG 123
           +PPG  G+ +   G   IGS   S   +A GS EG
Sbjct: 8   KPPGRGGKHSSPVGRPSIGSASSSVVASASGSKEG 42

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>WASIP_HUMAN (O43516) Wiskott-Aldrich syndrome protein-interacting protein|
           (WASP-interacting protein) (PRPL-2 protein)
          Length = 503

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = -3

Query: 275 PSTDLPFTSNRAMPAPRPPGSEGRPAGSPGDA 180
           PST  P  S++A P P PP   G P   P  +
Sbjct: 295 PSTPRPSASSQAPPPPPPPSRPGPPPLPPSSS 326

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>HIC1_MOUSE (Q9R1Y5) Hypermethylated in cancer 1 protein (Hic-1)|
          Length = 892

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 20/60 (33%), Positives = 25/60 (41%), Gaps = 10/60 (16%)
 Frame = -3

Query: 275 PSTDLPFTSNRAMPAPRPPGSEGRPAGS----------PGDAQIGSRCESEKGAAGGSLE 126
           P+ D PF  +   P P PP   GRP GS          PG    G     ++G+ G  LE
Sbjct: 461 PTPD-PFRGSGGSPGPEPP---GRPDGSSLLYRWMKHEPGLGSYGDELVRDRGSPGERLE 516

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>HXD1_HUMAN (Q9GZZ0) Homeobox protein Hox-D1|
          Length = 328

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 18/53 (33%), Positives = 24/53 (45%), Gaps = 9/53 (16%)
 Frame = -3

Query: 242 AMPAPRPPGSEGRPAGSPGDAQIGSRCESE---------KGAAGGSLEGFTSS 111
           A P+P PP +  RP+  P  A   ++C  E           AAGG+  GF  S
Sbjct: 59  ARPSPSPPAAPARPSVPPPAAPQYAQCTLEGAYEPGAAPAAAAGGADYGFLGS 111

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>TCF20_HUMAN (Q9UGU0) Transcription factor 20 (Stromelysin 1 PDGF-responsive|
           element-binding protein) (SPRE-binding protein) (Nuclear
           factor SPBP) (AR1)
          Length = 1960

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 18/49 (36%), Positives = 22/49 (44%), Gaps = 2/49 (4%)
 Frame = -3

Query: 254 TSNRAMPAPRPPGSEGRPAGSPGDAQIGSRCESEKGAAGGSL--EGFTS 114
           TS+ ++P P PPG  G      GD       E   G +G S    GFTS
Sbjct: 647 TSHASLPQPEPPGGGGSKGNKNGDNNSNHNGEG-NGQSGHSAAGPGFTS 694

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>CF055_MOUSE (Q9CR26) Protein C6orf55 homolog|
          Length = 309

 Score = 28.5 bits (62), Expect = 7.7
 Identities = 19/56 (33%), Positives = 24/56 (42%), Gaps = 2/56 (3%)
 Frame = +1

Query: 94  SDPVETELVNPSKLP--PAAPFSDSHRDPI*ASPGDPAGLPSDPGGRGAGMARFEV 255
           +D  E E V  + LP  P  P S S  DP   +PG  +G+   PG         EV
Sbjct: 173 NDVEENEDVGATSLPTQPPQPSSSSAYDPSNLAPGSYSGIQIPPGAHAPANTPAEV 228


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,782,475
Number of Sequences: 219361
Number of extensions: 760097
Number of successful extensions: 5049
Number of sequences better than 10.0: 52
Number of HSP's better than 10.0 without gapping: 3863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5022
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2618960580
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result