>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich|
           (Polypyrimidine tract-binding protein-associated
           splicing factor) (PTB-associated splicing factor) (PSF)
           (DNA-binding p52/p100 complex, 100 kDa subunit)
          Length = 699

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +2

Query: 92  PWWRPASLPPSTSSSGLASYPPYKDRQERGQGPGAPVGSVG 214
           P   P   PPST SSG+++ PP     + G  P  P G  G
Sbjct: 152 PSTAPGPPPPSTPSSGVSTTPP-----QTGGPPPPPAGGAG 187

>TARA_MOUSE (Q99KW3) TRIO and F-actin-binding protein (Protein Tara)|
            (Trio-associated repeat on actin)
          Length = 2014

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -2

Query: 260  TTAMGRARSQLTGGEIRRNQPERPGLVPSPVCPCT 156
            T   GRA++ L  G     Q E P  +PSP C  T
Sbjct: 1296 TQPEGRAKATLANGHRPGQQSESPAQLPSPACTST 1330

>EMIL2_HUMAN (Q9BXX0) EMILIN-2 precursor (Elastin microfibril interface-located|
           protein 2) (Elastin microfibril interfacer 2) (Protein
           FOAP-10)
          Length = 1053

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 17/37 (45%), Positives = 19/37 (51%)
 Frame = +1

Query: 157 VQGQTGEGTRPGRSGWFRRISPPVSWDLARPMAVVAS 267
           V GQTG GT PG  G+      P S  +A P A V S
Sbjct: 868 VDGQTGSGTVPGAEGFAGAPGYPKSPPVASPGAPVPS 904

>ARI1B_HUMAN (Q8NFD5) AT-rich interactive domain-containing protein 1B (ARID|
           domain-containing protein 1B) (Osa homolog 2) (hOsa2)
           (p250R) (BRG1-binding protein hELD/OSA1)
           (BRG1-associated factor 250b) (BAF250B)
          Length = 2236

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 20/51 (39%), Positives = 25/51 (49%), Gaps = 8/51 (15%)
 Frame = +2

Query: 110 SLPPSTSSSGLASYPP-------YKDRQERGQGPGAPVGSVG-SRLPSAGI 238
           S PP+ S    ASY           + Q  GQGP  P G+V   R+PSAG+
Sbjct: 841 SRPPAYSGVPSASYSGPGPGMGISANNQMHGQGPSQPCGAVPLGRMPSAGM 891

>ATN1_HUMAN (P54259) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)|
          Length = 1185

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 19/43 (44%), Positives = 21/43 (48%)
 Frame = +2

Query: 104 PASLPPSTSSSGLASYPPYKDRQERGQGPGAPVGSVGSRLPSA 232
           P + P S SSSG +  PP K        P  PVG  G  LPSA
Sbjct: 255 PPTTPISVSSSGASGAPPTKP-------PTTPVG--GGNLPSA 288

>COAA1_CHICK (P08125) Collagen alpha-1(X) chain precursor|
          Length = 674

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 14/31 (45%), Positives = 15/31 (48%)
 Frame = -1

Query: 246 AGEIPADGRRDPTEPTGAPGPCPLSCLSLYG 154
           AG +   G R P  P G PGP  LS L   G
Sbjct: 122 AGPVGLPGARGPQGPPGIPGPAGLSVLGKPG 152

>TB182_HUMAN (Q9C0C2) 182 kDa tankyrase 1-binding protein|
          Length = 1729

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 15/38 (39%), Positives = 21/38 (55%)
 Frame = +2

Query: 86  VSPWWRPASLPPSTSSSGLASYPPYKDRQERGQGPGAP 199
           +S  W P+S  PS+ + G AS  P    +  G GPG+P
Sbjct: 267 ISKPWIPSSPAPSSENGGPAS--PGLPAEASGSGPGSP 302

>ATN1_PANTR (Q5IS70) Atrophin-1 (Dentatorubral-pallidoluysian atrophy protein)|
          Length = 1186

 Score = 28.5 bits (62), Expect = 4.4
 Identities = 19/43 (44%), Positives = 21/43 (48%)
 Frame = +2

Query: 104 PASLPPSTSSSGLASYPPYKDRQERGQGPGAPVGSVGSRLPSA 232
           P + P S SSSG +  PP K        P  PVG  G  LPSA
Sbjct: 254 PPTTPISVSSSGASGAPPTKP-------PTTPVG--GGNLPSA 287

>RFIP1_HUMAN (Q6WKZ4) Rab11 family-interacting protein 1 (Rab11-FIP1)|
           (Rab-coupling protein)
          Length = 1283

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 14/22 (63%), Positives = 15/22 (68%)
 Frame = +2

Query: 89  SPWWRPASLPPSTSSSGLASYP 154
           SP   P+SLPP  SSSG AS P
Sbjct: 556 SPTDSPSSLPPLPSSSGQASVP 577

>NCOA6_HUMAN (Q14686) Nuclear receptor coactivator 6 (Amplified in breast cancer|
            protein 3) (Cancer-amplified transcriptional coactivator
            ASC-2) (Activating signal cointegrator 2) (ASC-2)
            (Peroxisome proliferator-activated receptor-interacting
            protein) (P
          Length = 2063

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 14/39 (35%), Positives = 18/39 (46%)
 Frame = +2

Query: 92   PWWRPASLPPSTSSSGLASYPPYKDRQERGQGPGAPVGS 208
            P  +  S+P   S  G AS PP  D+Q        P+GS
Sbjct: 1069 PMQQSGSVPVMVSLQGPASVPPSPDKQRMPMPVNTPLGS 1107

>CO3A1_HUMAN (P02461) Collagen alpha-1(III) chain precursor|
          Length = 1466

 Score = 27.7 bits (60), Expect = 7.5
 Identities = 13/23 (56%), Positives = 14/23 (60%), Gaps = 1/23 (4%)
 Frame = -1

Query: 249 GAGEIPA-DGRRDPTEPTGAPGP 184
           GA  +P  DG R PT P G PGP
Sbjct: 750 GADGVPGKDGPRGPTGPIGPPGP 772

>DGKI_HUMAN (O75912) Diacylglycerol kinase iota (EC 2.7.1.107) (Diglyceride|
           kinase iota) (DGK-iota) (DAG kinase iota)
          Length = 1065

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 11/25 (44%), Positives = 12/25 (48%)
 Frame = +2

Query: 86  VSPWWRPASLPPSTSSSGLASYPPY 160
           +S WW PA      S SGL    PY
Sbjct: 880 ISDWWNPALRKRMLSDSGLGMIAPY 904

>BAT2_HUMAN (P48634) Large proline-rich protein BAT2 (HLA-B-associated transcript|
            2)
          Length = 2157

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +2

Query: 128  SSSGLASYPPYKDRQERGQGPGAPVGSVGSRLPSAG 235
            S    +S  P  +RQ R  GPG   GS GS     G
Sbjct: 1381 SKRSFSSQRPGMERQNRRPGPGGKAGSSGSSSGGGG 1416

>BAT2_MACMU (Q5TM26) Large proline-rich protein BAT2 (HLA-B-associated transcript|
            2)
          Length = 2160

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 14/36 (38%), Positives = 16/36 (44%)
 Frame = +2

Query: 128  SSSGLASYPPYKDRQERGQGPGAPVGSVGSRLPSAG 235
            S    +S  P  +RQ R  GPG   GS GS     G
Sbjct: 1384 SKRSFSSQRPGMERQNRRPGPGGKAGSSGSSSGGGG 1419

>RL2_COXBU (Q83ES1) 50S ribosomal protein L2|
          Length = 275

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = -1

Query: 252 HGAGEIPADGRRDPTEPTGAP 190
           HG GE    G R P  PTG P
Sbjct: 232 HGGGEGKTSGGRHPVSPTGKP 252

>GYS3_MOUSE (P54859) Glycogen [starch] synthase, brain (EC 2.4.1.11)|
          Length = 737

 Score = 27.3 bits (59), Expect = 9.8
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 101 RPASLPPSTSSSGLASYPPYKDRQERGQGP 190
           RPAS+PPS S S  +S    +D +E   GP
Sbjct: 637 RPASVPPSPSLSRHSSPHQSEDEEEPRDGP 666


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 28,924,031
Number of Sequences: 219361
Number of extensions: 481859
Number of successful extensions: 2792
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 2212
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2781
length of database: 80,573,946
effective HSP length: 85
effective length of database: 61,928,261
effective search space used: 1486278264
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)