Clone Information

BLAST Search Result

Clone Name	bastl42g01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	ref\|NM_192804.1\| Oryza sativa (japonica cultivar-group), predic...	500	e-138
2	dbj\|AK065278.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	500	e-138
3	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	161	2e-36
4	dbj\|AP002897.2\| Oryza sativa (japonica cultivar-group) genomic D...	161	2e-36
5	ref\|NM_106690.3\| Arabidopsis thaliana EMB2753 AT1G80410 (EMB2753...	94	5e-16
6	gb\|AY091419.1\| Arabidopsis thaliana putative N-terminal acetyltr...	94	5e-16
7	gb\|AY064015.1\| Arabidopsis thaliana putative N-terminal acetyltr...	94	5e-16
8	dbj\|AK118131.1\| Arabidopsis thaliana At1g80410 mRNA for putative...	94	5e-16
9	ref\|XM_476724.1\| Oryza sativa (japonica cultivar-group), mRNA	90	8e-15
10	dbj\|AP006644.1\| Lotus japonicus genomic DNA, chromosome 3, clone...	84	5e-13
11	gb\|AC105767.2\| Oryza sativa (japonica cultivar-group) chromosome...	82	2e-12
12	dbj\|AP008211.1\| Oryza sativa (japonica cultivar-group) genomic D...	82	2e-12
13	gb\|AC018848.6\|AC018848 Arabidopsis thaliana chromosome 1 BAC F5I...	82	2e-12
14	gb\|AC018849.2\|AC018849 Arabidopsis thaliana chromosome 1 BAC T21...	82	2e-12
15	gb\|BT023981.1\| Zea mays clone EL01N0308E05 mRNA sequence	68	3e-08
16	dbj\|AP006130.1\| Lotus japonicus genomic DNA, chromosome 3, clone...	68	3e-08
17	dbj\|AP008213.1\| Oryza sativa (japonica cultivar-group) genomic D...	66	1e-07
18	dbj\|AP003842.5\| Oryza sativa (japonica cultivar-group) genomic D...	66	1e-07
19	dbj\|AP004267.3\| Oryza sativa (japonica cultivar-group) genomic D...	66	1e-07
20	emb\|CT025709.6\| Mouse DNA sequence from clone RP23-364G1 on chro...	44	0.40
21	dbj\|AP003040.2\| Homo sapiens genomic DNA, chromosome 11q clone:R...	44	0.40
22	gb\|AC165260.2\| Mus musculus BAC clone RP23-123E17 from chromosom...	42	1.6
23	gb\|AC165165.3\| Mus musculus BAC clone RP23-121B15 from chromosom...	42	1.6
24	dbj\|AK148827.1\| Mus musculus 2 days neonate sympathetic ganglion...	42	1.6
25	dbj\|AK029299.1\| Mus musculus 0 day neonate head cDNA, RIKEN full...	42	1.6
26	gb\|AC020740.5\|AC020740 Homo sapiens BAC clone RP11-795O2 from 4,...	42	1.6
27	gb\|AF000263.1\| Caenorhabditis elegans cosmid T08B2, complete seq...	42	1.6
28	gb\|AF067611.1\| Caenorhabditis elegans cosmid C45G7, complete seq...	42	1.6
29	gb\|CP000102.1\| Methanosphaera stadtmanae DSM 3091, complete genome	42	1.6
30	ref\|XM_549988.1\| Oryza sativa (japonica cultivar-group), mRNA	40	6.3
31	gb\|AE017134.1\| Yersinia pestis biovar Medievalis str. 91001 sect...	40	6.3
32	gb\|AE009952.1\| Yersinia pestis KIM, complete genome	40	6.3
33	gb\|AE016795.2\| Vibrio vulnificus CMCP6 chromosome I complete seq...	40	6.3
34	emb\|BX936398.1\| Yersinia pseudotuberculosis IP32953 genome, comp...	40	6.3
35	emb\|AJ414150.1\| Yersinia pestis strain CO92 complete genome; seg...	40	6.3
36	dbj\|BA000037.2\| Vibrio vulnificus YJ016 DNA, chromosome I, compl...	40	6.3
37	dbj\|AP003233.3\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.3
38	dbj\|AK121965.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	6.3
39	gb\|AC102476.14\| Mus musculus chromosome 5, clone RP24-396L12, co...	40	6.3
40	emb\|CR354430.16\| Zebrafish DNA sequence from clone CH211-218P2 i...	40	6.3
41	emb\|AL135746.3\|CNS01DVF Human chromosome 14 DNA sequence BAC R-3...	40	6.3
42	emb\|AL158059.3\|CNS01RGK Human chromosome 14 DNA sequence BAC C-2...	40	6.3
43	dbj\|AP002909.2\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.3

>ref|NM_192804.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2061

 Score =  500 bits (252), Expect = e-138
 Identities = 416/468 (88%), Gaps = 2/468 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagaaatgctttgaggattgatccagacaatattgaaattttgcgtgacttgtcacttc 60
           ||||||||||| |||||||||||||||| || || |||||| | |||||| |||||||||
Sbjct: 275 acagaaatgctctgaggattgatccagataacatagaaattctacgtgacctgtcacttc 334

                                                                       
Query: 61  tccaggcgcaaatgagggacttgtctggctttgttgagactagacaacagcttctgacat 120
           ||||||| ||||||||||||||||||||||||||||||||||| ||||| ||| | ||| 
Sbjct: 335 tccaggcacaaatgagggacttgtctggctttgttgagactaggcaacaacttttaacac 394

                                                                       
Query: 121 taaagccaaaccaccgtatgaactggattggctttgctgtatctcatcatttgagttcca 180
           | |||||||| ||||| |||||||||||||| ||||||||| |||| ||||| |||||||
Sbjct: 395 tgaagccaaatcaccgcatgaactggattggttttgctgtagctcaccatttaagttcca 454

                                                                       
Query: 181 actcttcaaaggcaatagaagtactggaggcatatgaggggacactggaagatgattatc 240
           | ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 455 attcttccaaggcaatagaagtattggaggcatatgaggggacactggaagatgattatc 514

                                                                       
Query: 241 ccccagaaaatgagcgatatgaacatggtgaaatgcttttgtataagatatcgttgcttg 300
           ||||||| |||||||||||||||||  ||||||||||| |||||||||| || ||| | |
Sbjct: 515 ccccagagaatgagcgatatgaacacagtgaaatgcttctgtataagatttcattgttcg 574

                                                                       
Query: 301 aggaatgtgggatgctggatagggcccttcaggagatgcacaagatggagagtaaaattg 360
           ||||||||||||||||||| || || ||| |||||||||| |||| |||||| |||||||
Sbjct: 575 aggaatgtgggatgctggacagagctcttgaggagatgcagaagaaggagagcaaaattg 634

                                                                       
Query: 361 ttgataagctctcattcagagaacagatggccagcattttgttgaaacttggccgttttg 420
           |||| ||||| || |||| |||||| |||||| |||||||||||||||||||||| ||||
Sbjct: 635 ttgacaagctatcgttcaaagaacaaatggcctgcattttgttgaaacttggccgctttg 694

                                                           
Query: 421 atgaggcagag-aaatatacaggtccctcctttt-atgaatcctgata 466
           | ||||| ||| ||| ||| |||||||| ||||| |||||||||||||
Sbjct: 695 aggaggctgagaaaacatataggtccctgcttttcatgaatcctgata 742

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>dbj|AK065278.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002L16, full
           insert sequence
          Length = 3426

 Score =  500 bits (252), Expect = e-138
 Identities = 416/468 (88%), Gaps = 2/468 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   acagaaatgctttgaggattgatccagacaatattgaaattttgcgtgacttgtcacttc 60
           ||||||||||| |||||||||||||||| || || |||||| | |||||| |||||||||
Sbjct: 400 acagaaatgctctgaggattgatccagataacatagaaattctacgtgacctgtcacttc 459

                                                                       
Query: 61  tccaggcgcaaatgagggacttgtctggctttgttgagactagacaacagcttctgacat 120
           ||||||| ||||||||||||||||||||||||||||||||||| ||||| ||| | ||| 
Sbjct: 460 tccaggcacaaatgagggacttgtctggctttgttgagactaggcaacaacttttaacac 519

                                                                       
Query: 121 taaagccaaaccaccgtatgaactggattggctttgctgtatctcatcatttgagttcca 180
           | |||||||| ||||| |||||||||||||| ||||||||| |||| ||||| |||||||
Sbjct: 520 tgaagccaaatcaccgcatgaactggattggttttgctgtagctcaccatttaagttcca 579

                                                                       
Query: 181 actcttcaaaggcaatagaagtactggaggcatatgaggggacactggaagatgattatc 240
           | ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 580 attcttccaaggcaatagaagtattggaggcatatgaggggacactggaagatgattatc 639

                                                                       
Query: 241 ccccagaaaatgagcgatatgaacatggtgaaatgcttttgtataagatatcgttgcttg 300
           ||||||| |||||||||||||||||  ||||||||||| |||||||||| || ||| | |
Sbjct: 640 ccccagagaatgagcgatatgaacacagtgaaatgcttctgtataagatttcattgttcg 699

                                                                       
Query: 301 aggaatgtgggatgctggatagggcccttcaggagatgcacaagatggagagtaaaattg 360
           ||||||||||||||||||| || || ||| |||||||||| |||| |||||| |||||||
Sbjct: 700 aggaatgtgggatgctggacagagctcttgaggagatgcagaagaaggagagcaaaattg 759

                                                                       
Query: 361 ttgataagctctcattcagagaacagatggccagcattttgttgaaacttggccgttttg 420
           |||| ||||| || |||| |||||| |||||| |||||||||||||||||||||| ||||
Sbjct: 760 ttgacaagctatcgttcaaagaacaaatggcctgcattttgttgaaacttggccgctttg 819

                                                           
Query: 421 atgaggcagag-aaatatacaggtccctcctttt-atgaatcctgata 466
           | ||||| ||| ||| ||| |||||||| ||||| |||||||||||||
Sbjct: 820 aggaggctgagaaaacatataggtccctgcttttcatgaatcctgata 867

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score =  161 bits (81), Expect = 2e-36
 Identities = 99/105 (94%)
 Strand = Plus / Minus

                                                                            
Query: 183      tcttcaaaggcaatagaagtactggaggcatatgaggggacactggaagatgattatccc 242
                ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 24540217 tcttccaaggcaatagaagtattggaggcatatgaggggacactggaagatgattatccc 24540158

                                                             
Query: 243      ccagaaaatgagcgatatgaacatggtgaaatgcttttgtataag 287
                ||||| |||||||||||||||||  ||||||||||| ||||||||
Sbjct: 24540157 ccagagaatgagcgatatgaacacagtgaaatgcttctgtataag 24540113



 Score =  133 bits (67), Expect = 6e-28
 Identities = 106/119 (89%)
 Strand = Plus / Minus

                                                                            
Query: 63       caggcgcaaatgagggacttgtctggctttgttgagactagacaacagcttctgacatta 122
                ||||| ||||||||||||||||||||||||||||||||||| ||||| ||| | ||| | 
Sbjct: 24540775 caggcacaaatgagggacttgtctggctttgttgagactaggcaacaacttttaacactg 24540716

                                                                           
Query: 123      aagccaaaccaccgtatgaactggattggctttgctgtatctcatcatttgagttccaa 181
                |||||||| ||||| |||||||||||||| ||||||||| |||| ||||| ||||||||
Sbjct: 24540715 aagccaaatcaccgcatgaactggattggttttgctgtagctcaccatttaagttccaa 24540657



 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 95/109 (87%), Gaps = 2/109 (1%)
 Strand = Plus / Minus

                                                                            
Query: 360      gttgataagctctcattcagagaacagatggccagcattttgttgaaacttggccgtttt 419
                ||||| ||||| || |||| |||||| |||||| |||||||||||||||||||||| |||
Sbjct: 24539496 gttgacaagctatcgttcaaagaacaaatggcctgcattttgttgaaacttggccgcttt 24539437

                                                                 
Query: 420      gatgaggcagag-aaatatacaggtccctcctttt-atgaatcctgata 466
                || ||||| ||| ||| ||| |||||||| ||||| |||||||||||||
Sbjct: 24539436 gaggaggctgagaaaacatataggtccctgcttttcatgaatcctgata 24539388



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 59/66 (89%)
 Strand = Plus / Minus

                                                                            
Query: 1        acagaaatgctttgaggattgatccagacaatattgaaattttgcgtgacttgtcacttc 60
                ||||||||||| |||||||||||||||| || || |||||| | |||||| |||||||||
Sbjct: 24541234 acagaaatgctctgaggattgatccagataacatagaaattctacgtgacctgtcacttc 24541175

                      
Query: 61       tccagg 66
                ||||||
Sbjct: 24541174 tccagg 24541169



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                            
Query: 300      gaggaatgtgggatgctggatagggcccttcaggagatgcacaagatggagagtaaaatt 359
                |||||||||||||||||||| || || ||| |||||||||| |||| |||||| ||||||
Sbjct: 24539639 gaggaatgtgggatgctggacagagctcttgaggagatgcagaagaaggagagcaaaatt 24539580

                  
Query: 360      gt 361
                ||
Sbjct: 24539579 gt 24539578



 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 417     tttgatgaggcagagaaata 436
               ||||||||||||||||||||
Sbjct: 1410097 tttgatgaggcagagaaata 1410116

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>dbj|AP002897.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0686E09
          Length = 156425

 Score =  161 bits (81), Expect = 2e-36
 Identities = 99/105 (94%)
 Strand = Plus / Minus

                                                                          
Query: 183    tcttcaaaggcaatagaagtactggaggcatatgaggggacactggaagatgattatccc 242
              ||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 120601 tcttccaaggcaatagaagtattggaggcatatgaggggacactggaagatgattatccc 120542

                                                           
Query: 243    ccagaaaatgagcgatatgaacatggtgaaatgcttttgtataag 287
              ||||| |||||||||||||||||  ||||||||||| ||||||||
Sbjct: 120541 ccagagaatgagcgatatgaacacagtgaaatgcttctgtataag 120497



 Score =  133 bits (67), Expect = 6e-28
 Identities = 106/119 (89%)
 Strand = Plus / Minus

                                                                          
Query: 63     caggcgcaaatgagggacttgtctggctttgttgagactagacaacagcttctgacatta 122
              ||||| ||||||||||||||||||||||||||||||||||| ||||| ||| | ||| | 
Sbjct: 121159 caggcacaaatgagggacttgtctggctttgttgagactaggcaacaacttttaacactg 121100

                                                                         
Query: 123    aagccaaaccaccgtatgaactggattggctttgctgtatctcatcatttgagttccaa 181
              |||||||| ||||| |||||||||||||| ||||||||| |||| ||||| ||||||||
Sbjct: 121099 aagccaaatcaccgcatgaactggattggttttgctgtagctcaccatttaagttccaa 121041



 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 95/109 (87%), Gaps = 2/109 (1%)
 Strand = Plus / Minus

                                                                          
Query: 360    gttgataagctctcattcagagaacagatggccagcattttgttgaaacttggccgtttt 419
              ||||| ||||| || |||| |||||| |||||| |||||||||||||||||||||| |||
Sbjct: 119880 gttgacaagctatcgttcaaagaacaaatggcctgcattttgttgaaacttggccgcttt 119821

                                                               
Query: 420    gatgaggcagag-aaatatacaggtccctcctttt-atgaatcctgata 466
              || ||||| ||| ||| ||| |||||||| ||||| |||||||||||||
Sbjct: 119820 gaggaggctgagaaaacatataggtccctgcttttcatgaatcctgata 119772



 Score = 75.8 bits (38), Expect = 1e-10
 Identities = 59/66 (89%)
 Strand = Plus / Minus

                                                                          
Query: 1      acagaaatgctttgaggattgatccagacaatattgaaattttgcgtgacttgtcacttc 60
              ||||||||||| |||||||||||||||| || || |||||| | |||||| |||||||||
Sbjct: 121618 acagaaatgctctgaggattgatccagataacatagaaattctacgtgacctgtcacttc 121559

                    
Query: 61     tccagg 66
              ||||||
Sbjct: 121558 tccagg 121553



 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 55/62 (88%)
 Strand = Plus / Minus

                                                                          
Query: 300    gaggaatgtgggatgctggatagggcccttcaggagatgcacaagatggagagtaaaatt 359
              |||||||||||||||||||| || || ||| |||||||||| |||| |||||| ||||||
Sbjct: 120023 gaggaatgtgggatgctggacagagctcttgaggagatgcagaagaaggagagcaaaatt 119964

                
Query: 360    gt 361
              ||
Sbjct: 119963 gt 119962

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>ref|NM_106690.3| Arabidopsis thaliana EMB2753 AT1G80410 (EMB2753) mRNA, complete cds
          Length = 3320

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 101/119 (84%)
 Strand = Plus / Plus

                                                                       
Query: 54  tcacttctccaggcgcaaatgagggacttgtctggctttgttgagactagacaacagctt 113
           |||||||| ||||| |||||| ||||||| || || ||||| ||||| || || ||||||
Sbjct: 500 tcacttctgcaggcacaaatgcgggacttatccggttttgtggagaccaggcagcagctt 559

                                                                      
Query: 114 ctgacattaaagccaaaccaccgtatgaactggattggctttgctgtatctcatcattt 172
            ||||||| ||||| || ||||| |||||||||||||||||||| || ||||| |||||
Sbjct: 560 ttgacattgaagcctaatcaccgaatgaactggattggctttgcagtctctcagcattt 618

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>gb|AY091419.1| Arabidopsis thaliana putative N-terminal acetyltransferase
           (At1g80410) mRNA, complete cds
          Length = 2725

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 101/119 (84%)
 Strand = Plus / Plus

                                                                       
Query: 54  tcacttctccaggcgcaaatgagggacttgtctggctttgttgagactagacaacagctt 113
           |||||||| ||||| |||||| ||||||| || || ||||| ||||| || || ||||||
Sbjct: 352 tcacttctgcaggcacaaatgcgggacttatccggttttgtggagaccaggcagcagctt 411

                                                                      
Query: 114 ctgacattaaagccaaaccaccgtatgaactggattggctttgctgtatctcatcattt 172
            ||||||| ||||| || ||||| |||||||||||||||||||| || ||||| |||||
Sbjct: 412 ttgacattgaagcctaatcaccgaatgaactggattggctttgcagtctctcagcattt 470

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>gb|AY064015.1| Arabidopsis thaliana putative N-terminal acetyltransferase
           (At1g80410) mRNA, complete cds
          Length = 3295

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 101/119 (84%)
 Strand = Plus / Plus

                                                                       
Query: 54  tcacttctccaggcgcaaatgagggacttgtctggctttgttgagactagacaacagctt 113
           |||||||| ||||| |||||| ||||||| || || ||||| ||||| || || ||||||
Sbjct: 496 tcacttctgcaggcacaaatgcgggacttatccggttttgtggagaccaggcagcagctt 555

                                                                      
Query: 114 ctgacattaaagccaaaccaccgtatgaactggattggctttgctgtatctcatcattt 172
            ||||||| ||||| || ||||| |||||||||||||||||||| || ||||| |||||
Sbjct: 556 ttgacattgaagcctaatcaccgaatgaactggattggctttgcagtctctcagcattt 614

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>dbj|AK118131.1| Arabidopsis thaliana At1g80410 mRNA for putative N-terminal
           acetyltransferase, complete cds, clone: RAFL19-43-D16
          Length = 3153

 Score = 93.7 bits (47), Expect = 5e-16
 Identities = 101/119 (84%)
 Strand = Plus / Plus

                                                                       
Query: 54  tcacttctccaggcgcaaatgagggacttgtctggctttgttgagactagacaacagctt 113
           |||||||| ||||| |||||| ||||||| || || ||||| ||||| || || ||||||
Sbjct: 500 tcacttctgcaggcacaaatgcgggacttatccggttttgtggagaccaggcagcagctt 559

                                                                      
Query: 114 ctgacattaaagccaaaccaccgtatgaactggattggctttgctgtatctcatcattt 172
            ||||||| ||||| || ||||| |||||||||||||||||||| || ||||| |||||
Sbjct: 560 ttgacattgaagcctaatcaccgaatgaactggattggctttgcagtctctcagcattt 618

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>ref|XM_476724.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 387

 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 131/157 (83%), Gaps = 2/157 (1%)
 Strand = Plus / Plus

                                                                       
Query: 312 atgctggatagggcccttcaggagatgcacaagatggagagtaaaattgttgataagctc 371
           |||||||| || || ||| |||||||||| || | ||| || ||||||||||| ||||| 
Sbjct: 85  atgctggacagagctcttgaggagatgcagaaaaaggatagcaaaattgttgacaagcta 144

                                                                       
Query: 372 tcattcagagaacagatggccagcattttgttgaaacttggccgttttgatgaggcagag 431
           ||||||| |||||| ||||||  | ||||||||||| ||||||| ||||| ||||| |||
Sbjct: 145 tcattcaaagaacaaatggcctacgttttgttgaaagttggccgctttgaggaggctgag 204

                                                
Query: 432 -aaatatacaggtccct-ccttttatgaatcctgata 466
            ||| ||| |||||| | | |||||||||||||||||
Sbjct: 205 aaaacatataggtccatgctttttatgaatcctgata 241

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>dbj|AP006644.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT06I23, TM0253,
             complete sequence
          Length = 85813

 Score = 83.8 bits (42), Expect = 5e-13
 Identities = 75/86 (87%)
 Strand = Plus / Minus

                                                                         
Query: 85    ctggctttgttgagactagacaacagcttctgacattaaagccaaaccaccgtatgaact 144
             ||||||||||||||||  | ||||||||||||||  | ||||||||||| || ||||| |
Sbjct: 21230 ctggctttgttgagacacggcaacagcttctgactctcaagccaaaccatcgcatgaatt 21171

                                       
Query: 145   ggattggctttgctgtatctcatcat 170
             |||||||||||||||| || ||||||
Sbjct: 21170 ggattggctttgctgtttcacatcat 21145



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 64/75 (85%)
 Strand = Plus / Minus

                                                                         
Query: 213   tatgaggggacactggaagatgattatcccccagaaaatgagcgatatgaacatggtgaa 272
             ||||| |||||| | |||||||||||||| ||| ||||||| || | ||| ||||| |||
Sbjct: 20714 tatgaagggacagtagaagatgattatcctccacaaaatgaacggtgtgagcatggggaa 20655

                            
Query: 273   atgcttttgtataag 287
             |||||||| ||||||
Sbjct: 20654 atgcttttatataag 20640



 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 18    attgatccagacaatattgaaat 40
             |||||||||||||||||||||||
Sbjct: 21858 attgatccagacaatattgaaat 21836

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>gb|AC105767.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1126_B11,
             complete sequence
          Length = 103615

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 94/109 (86%), Gaps = 2/109 (1%)
 Strand = Plus / Minus

                                                                         
Query: 360   gttgataagctctcattcagagaacagatggccagcattttgttgaaacttggccgtttt 419
             ||||| ||||| ||||||| |||||| ||| || |||||||||||||| ||||||| |||
Sbjct: 72659 gttgacaagctatcattcaaagaacaaatgtcctgcattttgttgaaagttggccgcttt 72600

                                                              
Query: 420   gatgaggcagag-aaatatacaggtccct-ccttttatgaatcctgata 466
             || ||||| ||| ||| ||| |||||||| | |||||||||||||||||
Sbjct: 72599 gaggaggcggagaaaacatataggtccctgctttttatgaatcctgata 72551

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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 94/109 (86%), Gaps = 2/109 (1%)
 Strand = Plus / Minus

                                                                            
Query: 360      gttgataagctctcattcagagaacagatggccagcattttgttgaaacttggccgtttt 419
                ||||| ||||| ||||||| |||||| ||| || |||||||||||||| ||||||| |||
Sbjct: 18191477 gttgacaagctatcattcaaagaacaaatgtcctgcattttgttgaaagttggccgcttt 18191418

                                                                 
Query: 420      gatgaggcagag-aaatatacaggtccct-ccttttatgaatcctgata 466
                || ||||| ||| ||| ||| |||||||| | |||||||||||||||||
Sbjct: 18191417 gaggaggcggagaaaacatataggtccctgctttttatgaatcctgata 18191369

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>gb|AC018848.6|AC018848 Arabidopsis thaliana chromosome 1 BAC F5I6 genomic sequence, complete
             sequence
          Length = 132990

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 92/109 (84%)
 Strand = Plus / Minus

                                                                         
Query: 64    aggcgcaaatgagggacttgtctggctttgttgagactagacaacagcttctgacattaa 123
             |||| |||||| ||||||| || || ||||| ||||| || || |||||| ||||||| |
Sbjct: 60844 aggcacaaatgcgggacttatccggttttgtggagaccaggcagcagcttttgacattga 60785

                                                              
Query: 124   agccaaaccaccgtatgaactggattggctttgctgtatctcatcattt 172
             |||| || ||||| |||||||||||||||||||| || ||||| |||||
Sbjct: 60784 agcctaatcaccgaatgaactggattggctttgcagtctctcagcattt 60736

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>gb|AC018849.2|AC018849 Arabidopsis thaliana chromosome 1 BAC T21F11 genomic sequence, complete
             sequence
          Length = 89811

 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 92/109 (84%)
 Strand = Plus / Plus

                                                                         
Query: 64    aggcgcaaatgagggacttgtctggctttgttgagactagacaacagcttctgacattaa 123
             |||| |||||| ||||||| || || ||||| ||||| || || |||||| ||||||| |
Sbjct: 85306 aggcacaaatgcgggacttatccggttttgtggagaccaggcagcagcttttgacattga 85365

                                                              
Query: 124   agccaaaccaccgtatgaactggattggctttgctgtatctcatcattt 172
             |||| || ||||| |||||||||||||||||||| || ||||| |||||
Sbjct: 85366 agcctaatcaccgaatgaactggattggctttgcagtctctcagcattt 85414

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>gb|BT023981.1| Zea mays clone EL01N0308E05 mRNA sequence
          Length = 2423

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 100/122 (81%)
 Strand = Plus / Plus

                                                                       
Query: 303 gaatgtgggatgctggatagggcccttcaggagatgcacaagatggagagtaaaattgtt 362
           |||||||||||||| || || |||| | | || ||||| |||| |||||| |||||||||
Sbjct: 4   gaatgtgggatgctagacagagcccctgaagaaatgcagaagaaggagagcaaaattgtt 63

                                                                       
Query: 363 gataagctctcattcagagaacagatggccagcattttgttgaaacttggccgttttgat 422
           || ||||| ||||||| |||||| |||||   | | | ||| ||||||||||| ||||||
Sbjct: 64  gacaagctatcattcaaagaacaaatggcatccgtctcgttcaaacttggccgctttgat 123

             
Query: 423 ga 424
           ||
Sbjct: 124 ga 125

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>dbj|AP006130.1| Lotus japonicus genomic DNA, chromosome 3, clone:LjT36O13, TM0226,
             complete sequence
          Length = 140838

 Score = 67.9 bits (34), Expect = 3e-08
 Identities = 67/78 (85%)
 Strand = Plus / Plus

                                                                         
Query: 210   gcatatgaggggacactggaagatgattatcccccagaaaatgagcgatatgaacatggt 269
             |||||||| |||||  | |||| ||||||||| ||||||||||| ||||  || ||||| 
Sbjct: 24905 gcatatgaagggactttagaaggtgattatcctccagaaaatgaacgatgggagcatggg 24964

                               
Query: 270   gaaatgcttttgtataag 287
             ||||||||||||||||||
Sbjct: 24965 gaaatgcttttgtataag 24982



 Score = 50.1 bits (25), Expect = 0.007
 Identities = 55/65 (84%)
 Strand = Plus / Plus

                                                                         
Query: 87    ggctttgttgagactagacaacagcttctgacattaaagccaaaccaccgtatgaactgg 146
             |||||||||||||| ||||| || ||| ||||  | |||||||| || || |||||||||
Sbjct: 24335 ggctttgttgagaccagacagcaacttttgactctgaagccaaatcatcgcatgaactgg 24394

                  
Query: 147   attgg 151
             |||||
Sbjct: 24395 attgg 24399



 Score = 44.1 bits (22), Expect = 0.40
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                           
Query: 21    gatccagacaatattgaaattttgcgtgac 50
             ||||| ||||||||||||||| ||||||||
Sbjct: 22827 gatcctgacaatattgaaattctgcgtgac 22856

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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
               sequence
          Length = 29644043

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 92/109 (84%), Gaps = 2/109 (1%)
 Strand = Plus / Plus

                                                                           
Query: 360     gttgataagctctcattcagagaacagatggccagcattttgttgaaacttggccgtttt 419
               ||||| ||||| ||||||| |||||| ||||||  | ||||||||||| ||||||| |||
Sbjct: 3588881 gttgacaagctatcattcaaagaacaaatggcctacgttttgttgaaagttggccgcttt 3588940

                                                                
Query: 420     gatgaggcagag-aaatatacaggtccct-ccttttatgaatcctgata 466
               || ||||| ||| ||| ||| |||||| | | |||||||||||||||||
Sbjct: 3588941 gaggaggctgagaaaacatataggtccatgctttttatgaatcctgata 3588989

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>dbj|AP003842.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1641_C04
          Length = 134367

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 92/109 (84%), Gaps = 2/109 (1%)
 Strand = Plus / Plus

                                                                         
Query: 360   gttgataagctctcattcagagaacagatggccagcattttgttgaaacttggccgtttt 419
             ||||| ||||| ||||||| |||||| ||||||  | ||||||||||| ||||||| |||
Sbjct: 58198 gttgacaagctatcattcaaagaacaaatggcctacgttttgttgaaagttggccgcttt 58257

                                                              
Query: 420   gatgaggcagag-aaatatacaggtccct-ccttttatgaatcctgata 466
             || ||||| ||| ||| ||| |||||| | | |||||||||||||||||
Sbjct: 58258 gaggaggctgagaaaacatataggtccatgctttttatgaatcctgata 58306

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>dbj|AP004267.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC
              clone:P0039H02
          Length = 169162

 Score = 65.9 bits (33), Expect = 1e-07
 Identities = 92/109 (84%), Gaps = 2/109 (1%)
 Strand = Plus / Plus

                                                                          
Query: 360    gttgataagctctcattcagagaacagatggccagcattttgttgaaacttggccgtttt 419
              ||||| ||||| ||||||| |||||| ||||||  | ||||||||||| ||||||| |||
Sbjct: 126831 gttgacaagctatcattcaaagaacaaatggcctacgttttgttgaaagttggccgcttt 126890

                                                               
Query: 420    gatgaggcagag-aaatatacaggtccct-ccttttatgaatcctgata 466
              || ||||| ||| ||| ||| |||||| | | |||||||||||||||||
Sbjct: 126891 gaggaggctgagaaaacatataggtccatgctttttatgaatcctgata 126939

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>emb|CT025709.6| Mouse DNA sequence from clone RP23-364G1 on chromosome 17, complete
              sequence
          Length = 162359

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                    
Query: 357    attgttgataagctctcattca 378
              ||||||||||||||||||||||
Sbjct: 152213 attgttgataagctctcattca 152234

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>dbj|AP003040.2| Homo sapiens genomic DNA, chromosome 11q clone:RP11-335F8, complete
             sequence
          Length = 80198

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 169   atttgagttccaactcttcaaa 190
             ||||||||||||||||||||||
Sbjct: 58300 atttgagttccaactcttcaaa 58279

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>gb|AC165260.2| Mus musculus BAC clone RP23-123E17 from chromosome 13, complete sequence
          Length = 209914

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 1      acagaaatgctttgaggattg 21
              |||||||||||||||||||||
Sbjct: 191791 acagaaatgctttgaggattg 191771

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>gb|AC165165.3| Mus musculus BAC clone RP23-121B15 from chromosome 3, complete sequence
          Length = 228648

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 377    cagagaacagatggccagcat 397
              |||||||||||||||||||||
Sbjct: 136900 cagagaacagatggccagcat 136880

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>dbj|AK148827.1| Mus musculus 2 days neonate sympathetic ganglion cDNA, RIKEN
            full-length enriched library, clone:7120452G09
            product:unclassifiable, full insert sequence
          Length = 2130

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 377  cagagaacagatggccagcat 397
            |||||||||||||||||||||
Sbjct: 1332 cagagaacagatggccagcat 1352

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>dbj|AK029299.1| Mus musculus 0 day neonate head cDNA, RIKEN full-length enriched
            library, clone:4832416J02 product:unclassifiable, full
            insert sequence
          Length = 4967

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 377  cagagaacagatggccagcat 397
            |||||||||||||||||||||
Sbjct: 3374 cagagaacagatggccagcat 3394

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>gb|AC020740.5|AC020740 Homo sapiens BAC clone RP11-795O2 from 4, complete sequence
          Length = 196367

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 420    gatgaggcagagaaatataca 440
              |||||||||||||||||||||
Sbjct: 170405 gatgaggcagagaaatataca 170385

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>gb|AF000263.1| Caenorhabditis elegans cosmid T08B2, complete sequence
          Length = 28189

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 30   aatattgaaattttgcgtgac 50
            |||||||||||||||||||||
Sbjct: 7422 aatattgaaattttgcgtgac 7442

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>gb|AF067611.1| Caenorhabditis elegans cosmid C45G7, complete sequence
          Length = 42696

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 414   cgttttgatgaggcagagaaa 434
             |||||||||||||||||||||
Sbjct: 37346 cgttttgatgaggcagagaaa 37326

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>gb|CP000102.1| Methanosphaera stadtmanae DSM 3091, complete genome
          Length = 1767403

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 199     aagtactggaggcatatgagg 219
               |||||||||||||||||||||
Sbjct: 1701339 aagtactggaggcatatgagg 1701319

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>ref|XM_549988.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1259

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 417  tttgatgaggcagagaaata 436
            ||||||||||||||||||||
Sbjct: 1149 tttgatgaggcagagaaata 1130

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>gb|AE017134.1| Yersinia pestis biovar Medievalis str. 91001 section 8 of 16 of the
             complete genome
          Length = 290029

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 387   atggccagcattttgttgaa 406
             ||||||||||||||||||||
Sbjct: 15188 atggccagcattttgttgaa 15207

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>gb|AE009952.1| Yersinia pestis KIM, complete genome
          Length = 4600755

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 387     atggccagcattttgttgaa 406
               ||||||||||||||||||||
Sbjct: 2552958 atggccagcattttgttgaa 2552939

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>gb|AE016795.2| Vibrio vulnificus CMCP6 chromosome I complete sequence
          Length = 3281944

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 85      ctggctttgttgagactaga 104
               ||||||||||||||||||||
Sbjct: 1671329 ctggctttgttgagactaga 1671348

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>emb|BX936398.1| Yersinia pseudotuberculosis IP32953 genome, complete sequence
          Length = 4744671

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 387     atggccagcattttgttgaa 406
               ||||||||||||||||||||
Sbjct: 2339379 atggccagcattttgttgaa 2339398

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>emb|AJ414150.1| Yersinia pestis strain CO92 complete genome; segment 10/20
          Length = 335050

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 387    atggccagcattttgttgaa 406
              ||||||||||||||||||||
Sbjct: 332893 atggccagcattttgttgaa 332912

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>dbj|BA000037.2| Vibrio vulnificus YJ016 DNA, chromosome I, complete sequence
          Length = 3354505

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 85      ctggctttgttgagactaga 104
               ||||||||||||||||||||
Sbjct: 2756956 ctggctttgttgagactaga 2756937

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>dbj|AP003233.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0037C04
          Length = 137879

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 417    tttgatgaggcagagaaata 436
              ||||||||||||||||||||
Sbjct: 108148 tttgatgaggcagagaaata 108167

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>dbj|AK121965.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033108C20, full
            insert sequence
          Length = 1259

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 417  tttgatgaggcagagaaata 436
            ||||||||||||||||||||
Sbjct: 1149 tttgatgaggcagagaaata 1130

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>gb|AC102476.14| Mus musculus chromosome 5, clone RP24-396L12, complete sequence
          Length = 181047

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 90    tttgttgagactagacaacagctt 113
             ||||||||||||||| ||||||||
Sbjct: 64818 tttgttgagactagaaaacagctt 64795

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>emb|CR354430.16| Zebrafish DNA sequence from clone CH211-218P2 in linkage group 25,
             complete sequence
          Length = 197231

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 395   cattttgttgaaacttggcc 414
             ||||||||||||||||||||
Sbjct: 34674 cattttgttgaaacttggcc 34655

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>emb|AL135746.3|CNS01DVF Human chromosome 14 DNA sequence BAC R-325D8 of library RPCI-11 from
            chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 172800

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 257  atatgaacatggtgaaatgctttt 280
            ||||||||||||||||||| ||||
Sbjct: 3214 atatgaacatggtgaaatgttttt 3237

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>emb|AL158059.3|CNS01RGK Human chromosome 14 DNA sequence BAC C-2007A10 of library CalTech-D from
              chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 148515

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 257    atatgaacatggtgaaatgctttt 280
              ||||||||||||||||||| ||||
Sbjct: 117938 atatgaacatggtgaaatgttttt 117961

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>dbj|AP002909.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0044F08
          Length = 141528

 Score = 40.1 bits (20), Expect = 6.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 417   tttgatgaggcagagaaata 436
             ||||||||||||||||||||
Sbjct: 59718 tttgatgaggcagagaaata 59737


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5,214,777
Number of Sequences: 3902068
Number of extensions: 5214777
Number of successful extensions: 89371
Number of sequences better than 10.0: 43
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 89096
Number of HSP's gapped (non-prelim): 268
length of query: 466
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 444
effective length of database: 17,147,199,772
effective search space: 7613356698768
effective search space used: 7613356698768
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result