>DP2L_HALSA (Q9HMX8) DNA polymerase II large subunit (EC 2.7.7.7) (Pol II)|
           [Contains: Hsp-NRC1 polC intein (Hsp-NRC1 pol2 intein)]
          Length = 1370

 Score = 28.1 bits (61), Expect = 5.7
 Identities = 11/20 (55%), Positives = 13/20 (65%)
 Frame = -1

Query: 114 AGSVRPLGHKWDLHGAPREH 55
           AG  R LG+  D+HG P EH
Sbjct: 813 AGQFRELGYNQDIHGDPLEH 832

>DLX2A_BRARE (P50574) Homeobox protein Dlx2a (DLX-2) (Distal-less homeobox gene|
           2a)
          Length = 270

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 16/46 (34%), Positives = 19/46 (41%)
 Frame = -3

Query: 259 SGTLPPAE*THPLPPLSTPREANEMAPMETTXXXXXXALQPNSTAP 122
           SG  PP    HP PPL+   +      M T       +  PNST P
Sbjct: 195 SGESPP----HPSPPLAAAWDFAHSQRMNTVNSGLSQSSPPNSTTP 236

>CYAD_BORPE (P11091) Protein cyaD|
          Length = 440

 Score = 27.7 bits (60), Expect = 7.4
 Identities = 16/52 (30%), Positives = 22/52 (42%), Gaps = 9/52 (17%)
 Frame = -3

Query: 202 REANEMAPMETTXXXXXXALQPNSTAPRARWI---------GATTWSQMGSS 74
           R A    P+ET       +LQ    +P ARW+         GA  WS +G +
Sbjct: 26  RPAGWFDPVETEFLPSALSLQERPISPTARWLARILMALAAGALVWSVVGKT 77

>ZBTB9_HUMAN (Q96C00) Zinc finger and BTB domain-containing protein 9|
          Length = 473

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
 Frame = -3

Query: 259 SGTLPPAE*THPLPPLSTPRE--ANEMAPME 173
           SG  P     HPLP  +TPR+    E AP+E
Sbjct: 241 SGVFPRPHGPHPLPMTATPRKLPEGESAPLE 271

>GLI4_XENLA (Q91661) Zinc finger protein GLI4 (Neural-specific DNA-binding|
            protein xGLI4) (xGLI-4)
          Length = 1361

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 16/43 (37%), Positives = 25/43 (58%)
 Frame = -3

Query: 145  LQPNSTAPRARWIGATTWSQMGSSWRSPRAPRVWVSKRFPVLA 17
            LQ   ++P AR + + T S   ++   PRAP  ++S+ FP LA
Sbjct: 915  LQTEYSSP-ARNLQSNTKSFHNNTPEQPRAPGAYLSRNFPALA 956

>MMPL3_MYCTU (O53657) Putative membrane protein mmpL3|
          Length = 944

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 23/68 (33%), Positives = 30/68 (44%), Gaps = 6/68 (8%)
 Frame = -3

Query: 247 PPAE*THPL-----PPLSTPREANEMAP-METTXXXXXXALQPNSTAPRARWIGATTWSQ 86
           PP + THPL     P  S+P  + E+ P +E T             AP A    +TT  Q
Sbjct: 784 PPHDPTHPLAESPRPARSSPASSPELTPALEAT------------AAPAAPSGASTTRMQ 831

Query: 85  MGSSWRSP 62
           +GSS   P
Sbjct: 832 IGSSTEPP 839

>SPAP_STRMU (P23504) Cell surface antigen I/II precursor [Contains: Cell|
           surface antigen I; Cell surface antigen II]
          Length = 1562

 Score = 27.3 bits (59), Expect = 9.7
 Identities = 12/25 (48%), Positives = 13/25 (52%)
 Frame = -3

Query: 118 ARWIGATTWSQMGSSWRSPRAPRVW 44
           ARW   T  S+ GS W S  AP  W
Sbjct: 745 ARWTMYTRASEPGSGWDSSDAPNSW 769


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 33,066,463
Number of Sequences: 219361
Number of extensions: 413542
Number of successful extensions: 1292
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 1262
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1291
length of database: 80,573,946
effective HSP length: 88
effective length of database: 61,270,178
effective search space used: 1470484272
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)