ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl42f10 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AB031298.1| Siganus guttatus mRNA for growth hormone, complete cds Length = 860 Score = 40.1 bits (20), Expect = 2.0 Identities = 20/20 (100%) Strand = Plus / Plus Query: 3 agcagagatctttccggaga 22 |||||||||||||||||||| Sbjct: 508 agcagagatctttccggaga 527
>ref|XM_776214.1| PREDICTED: Strongylocentrotus purpuratus similar to protein tyrosine phosphatase, receptor type, T (LOC575841), partial mRNA Length = 836 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 8 agatctttccggagatcca 26 ||||||||||||||||||| Sbjct: 159 agatctttccggagatcca 141
>ref|XM_790161.1| PREDICTED: Strongylocentrotus purpuratus similar to Receptor-type tyrosine-protein phosphatase alpha precursor (Protein-tyrosine phosphatase alpha) (R-PTP-alpha) (LOC590562), mRNA Length = 4047 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 8 agatctttccggagatcca 26 ||||||||||||||||||| Sbjct: 2085 agatctttccggagatcca 2067
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 20 agatccactcccaacaaat 38 ||||||||||||||||||| Sbjct: 19882576 agatccactcccaacaaat 19882558
>dbj|AP004753.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC clone:P0508B05 Length = 166165 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 20 agatccactcccaacaaat 38 ||||||||||||||||||| Sbjct: 60177 agatccactcccaacaaat 60159
>dbj|AK064436.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-110-D08, full insert sequence Length = 1569 Score = 38.2 bits (19), Expect = 7.8 Identities = 19/19 (100%) Strand = Plus / Minus Query: 20 agatccactcccaacaaat 38 ||||||||||||||||||| Sbjct: 539 agatccactcccaacaaat 521 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 470,331 Number of Sequences: 3902068 Number of extensions: 470331 Number of successful extensions: 31966 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 6 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 31952 Number of HSP's gapped (non-prelim): 14 length of query: 162 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 140 effective length of database: 17,147,199,772 effective search space: 2400607968080 effective search space used: 2400607968080 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 19 (38.2 bits)
