ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl42f09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AB088224.1| Streptomyces rochei plasmid pSLA2-L DNA, complet... 46 0.10
2gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
3gb|BC019771.1| Mus musculus urate oxidase, mRNA (cDNA clone MGC:... 42 1.6
4ref|NM_009474.3| Mus musculus urate oxidase (Uox), mRNA 42 1.6
5emb|CR555306.1| Azoarcus sp. EbN1 complete genome 42 1.6
6dbj|AK050425.1| Mus musculus adult male liver tumor cDNA, RIKEN ... 42 1.6
7dbj|AK050047.1| Mus musculus adult male liver tumor cDNA, RIKEN ... 42 1.6
8dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.6
9gb|U75930.2|OPU75930 Orgyia pseudotsugata multicapsid nucleopoly... 42 1.6
10gb|AC114618.9| Mus musculus chromosome 3, clone RP24-86C15, comp... 42 1.6
11gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 42 1.6
12gb|AC141632.4| Mus musculus BAC clone RP24-100G24 from 3, comple... 42 1.6
13gb|M27695.1|MUSUOX Mouse urate oxidase mRNA, complete cds 42 1.6
14gb|U02486.1|AH005406S3 Mus musculus putative membrane protein (K... 40 6.5
15dbj|AK148179.1| Mus musculus B16 F10Y cells cDNA, RIKEN full-len... 40 6.5
16gb|U02487.1|MMU02487 Mus musculus LAF putative membrane protein ... 40 6.5
17ref|NM_010656.1| Mus musculus sarcospan (Sspn), mRNA 40 6.5
18gb|AC090621.10| Homo sapiens chromosome 18, clone RP11-396N11, c... 40 6.5
19gb|AC027665.4|AC027665 Genomic sequence for Arabidopsis thaliana... 40 6.5
20gb|AC144936.4| Mus musculus BAC clone RP24-238C11 from 6, comple... 40 6.5 
>dbj|AB088224.1| Streptomyces rochei plasmid pSLA2-L DNA, complete sequence
          Length = 210614

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 160   cctgccgcgcggccggccacgag 182
             |||||||||||||||||||||||
Sbjct: 53085 cctgccgcgcggccggccacgag 53063
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>gb|AC112208.3| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0015P05 map C53961S, complete sequence
          Length = 175121

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 219   agatccggcaccgccgtctcg 239
             |||||||||||||||||||||
Sbjct: 54340 agatccggcaccgccgtctcg 54320
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>gb|BC019771.1| Mus musculus urate oxidase, mRNA (cDNA clone MGC:30311
           IMAGE:5136328), complete cds
          Length = 1768

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 448 gatcatacacgtccatgcattcatc 472
           ||||| |||||||||||||||||||
Sbjct: 409 gatcaaacacgtccatgcattcatc 433
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>ref|NM_009474.3| Mus musculus urate oxidase (Uox), mRNA
          Length = 1844

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 448 gatcatacacgtccatgcattcatc 472
           ||||| |||||||||||||||||||
Sbjct: 428 gatcaaacacgtccatgcattcatc 452
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 216     gcgagatccggcaccgccgtc 236
               |||||||||||||||||||||
Sbjct: 1579343 gcgagatccggcaccgccgtc 1579323
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>dbj|AK050425.1| Mus musculus adult male liver tumor cDNA, RIKEN full-length
           enriched library, clone:C730047G18 product:urate
           oxidase, full insert sequence
          Length = 1844

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 448 gatcatacacgtccatgcattcatc 472
           ||||| |||||||||||||||||||
Sbjct: 428 gatcaaacacgtccatgcattcatc 452
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>dbj|AK050047.1| Mus musculus adult male liver tumor cDNA, RIKEN full-length
           enriched library, clone:C730006L24 product:urate
           oxidase, full insert sequence
          Length = 1186

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 448 gatcatacacgtccatgcattcatc 472
           ||||| |||||||||||||||||||
Sbjct: 217 gatcaaacacgtccatgcattcatc 241
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 219      agatccggcaccgccgtctcg 239
                |||||||||||||||||||||
Sbjct: 11267982 agatccggcaccgccgtctcg 11267962
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>gb|U75930.2|OPU75930 Orgyia pseudotsugata multicapsid nucleopolyhedrovirus, complete genome
          Length = 131995

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 229   ccgccgtctcggcgccgcagc 249
             |||||||||||||||||||||
Sbjct: 11115 ccgccgtctcggcgccgcagc 11135
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>gb|AC114618.9| Mus musculus chromosome 3, clone RP24-86C15, complete sequence
          Length = 209209

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                       
Query: 448    gatcatacacgtccatgcattcatc 472
              ||||| |||||||||||||||||||
Sbjct: 188002 gatcaaacacgtccatgcattcatc 187978
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 219      agatccggcaccgccgtctcg 239
                |||||||||||||||||||||
Sbjct: 11347171 agatccggcaccgccgtctcg 11347151
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>gb|AC141632.4| Mus musculus BAC clone RP24-100G24 from 3, complete sequence
          Length = 180488

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                      
Query: 448   gatcatacacgtccatgcattcatc 472
             ||||| |||||||||||||||||||
Sbjct: 19361 gatcaaacacgtccatgcattcatc 19337
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>gb|M27695.1|MUSUOX Mouse urate oxidase mRNA, complete cds
          Length = 933

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 448 gatcatacacgtccatgcattcatc 472
           ||||| |||||||||||||||||||
Sbjct: 382 gatcaaacacgtccatgcattcatc 406
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>gb|U02486.1|AH005406S3 Mus musculus putative membrane protein (KRA) gene, exon 3 and
            complete cds
          Length = 4141

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 297  ttccagcttataatattctg 316
            ||||||||||||||||||||
Sbjct: 2751 ttccagcttataatattctg 2770
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>dbj|AK148179.1| Mus musculus B16 F10Y cells cDNA, RIKEN full-length enriched library,
            clone:G370042C22 product:sarcospan, full insert sequence
          Length = 4404

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 297  ttccagcttataatattctg 316
            ||||||||||||||||||||
Sbjct: 3031 ttccagcttataatattctg 3050
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>gb|U02487.1|MMU02487 Mus musculus LAF putative membrane protein (KRAG) mRNA, complete cds
          Length = 4420

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 297  ttccagcttataatattctg 316
            ||||||||||||||||||||
Sbjct: 3029 ttccagcttataatattctg 3048
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>ref|NM_010656.1| Mus musculus sarcospan (Sspn), mRNA
          Length = 4420

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 297  ttccagcttataatattctg 316
            ||||||||||||||||||||
Sbjct: 3029 ttccagcttataatattctg 3048
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>gb|AC090621.10| Homo sapiens chromosome 18, clone RP11-396N11, complete sequence
          Length = 188858

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 459   tccatgcattcatctaagtc 478
             ||||||||||||||||||||
Sbjct: 25778 tccatgcattcatctaagtc 25759
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>gb|AC027665.4|AC027665 Genomic sequence for Arabidopsis thaliana BAC F5M15 from chromosome I,
             complete sequence
          Length = 99231

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 433   ggcatatgaactaaagatca 452
             ||||||||||||||||||||
Sbjct: 68882 ggcatatgaactaaagatca 68863
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>gb|AC144936.4| Mus musculus BAC clone RP24-238C11 from 6, complete sequence
          Length = 174789

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 297   ttccagcttataatattctg 316
             ||||||||||||||||||||
Sbjct: 32539 ttccagcttataatattctg 32520


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,345,341
Number of Sequences: 3902068
Number of extensions: 2345341
Number of successful extensions: 39334
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 39231
Number of HSP's gapped (non-prelim): 103
length of query: 479
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 457
effective length of database: 17,147,199,772
effective search space: 7836270295804
effective search space used: 7836270295804
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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