>MMPL3_MYCTU (O53657) Putative membrane protein mmpL3|
          Length = 944

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 21/55 (38%), Positives = 23/55 (41%), Gaps = 5/55 (9%)
 Frame = +2

Query: 176  AAGDPRFPIALLAVAAGDGDQGTRI-----AAAAYLKIFARRNMEGGLSSSDLYR 325
            AAGDP  P A L +   DGD          A     K   RR   G LS+ DL R
Sbjct: 885  AAGDPAEPTAALPIIRSDGDDSEAATEQLNARGTSDKTRQRRRGGGALSAQDLLR 939

>TBC2_CHLRE (Q8VXP3) Tbc2 translation factor, chloroplast precursor|
          Length = 1115

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 19/49 (38%), Positives = 23/49 (46%), Gaps = 10/49 (20%)
 Frame = +2

Query: 146  AATAGLDRISAAGDPRFPIALLAVAAGDG----------DQGTRIAAAA 262
            AA AG    +AAGD    ++ +  AAGDG          D GT   AAA
Sbjct: 933  AAPAGASSAAAAGDSPAALSAVPAAAGDGALVPSFMSIDDDGTAAVAAA 981

>TI50C_DROME (Q9W4V8) Import inner membrane translocase subunit TIM50-C,|
           mitochondrial precursor
          Length = 428

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 14/42 (33%), Positives = 22/42 (52%)
 Frame = +2

Query: 224 GDGDQGTRIAAAAYLKIFARRNMEGGLSSSDLYREFRDQLAQ 349
           G+ D G  +   A+LKI A+ N++        YR+F D + Q
Sbjct: 350 GNDDDGQLLDLIAFLKIIAQNNVDDVREVLHYYRQFDDPINQ 391

>VP4_ROTB9 (Q08010) Outer capsid protein VP4 (Hemagglutinin) (Outer layer|
           protein VP4) [Contains: Outer capsid protein VP8; Outer
           capsid protein VP5]
          Length = 770

 Score = 28.1 bits (61), Expect = 5.3
 Identities = 29/98 (29%), Positives = 43/98 (43%), Gaps = 1/98 (1%)
 Frame = +2

Query: 101 SLLAATLSADKTSVDAATAGLDRISAAGDPRFPIALLAVAAGD-GDQGTRIAAAAYLKIF 277
           S +   LS   TSV  A++     S   +        +VA  D   Q +RIA+   +K F
Sbjct: 558 STITEELSDAATSVSRASSIRSNASVWNNLVDTRTQTSVATNDIATQTSRIASKLRVKEF 617

Query: 278 ARRNMEGGLSSSDLYREFRDQLAQALLRVEPAILRVLI 391
           A +  EGGLS +D+           +  V+P IL  +I
Sbjct: 618 ATQT-EGGLSFNDISAAVLKTKIDKIETVQPKILPTII 654

>MTNA_LEPIN (Q8F2A8) Probable methylthioribose-1-phosphate isomerase (EC|
           5.3.1.23) (MTR-1-P isomerase)
          Length = 364

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 17/76 (22%)
 Frame = +2

Query: 140 VDAATAGLDRISAAGDP-----RFPIALLA--------VAAGDGDQGTRIAAAAYLKIFA 280
           +DA   G DRI++ GD       +P+A++A        VAA       RI   +Y+ I  
Sbjct: 234 IDAVIVGADRIASNGDTANKIGTYPLAIVAKHHGVPFYVAATAKSMDFRIPNGSYIPIEM 293

Query: 281 RRNME----GGLSSSD 316
           R+  E    G L  SD
Sbjct: 294 RKEEEITSFGFLKDSD 309

>MTNA_LEPIC (Q72T46) Probable methylthioribose-1-phosphate isomerase (EC|
           5.3.1.23) (MTR-1-P isomerase)
          Length = 364

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 24/76 (31%), Positives = 34/76 (44%), Gaps = 17/76 (22%)
 Frame = +2

Query: 140 VDAATAGLDRISAAGDP-----RFPIALLA--------VAAGDGDQGTRIAAAAYLKIFA 280
           +DA   G DRI++ GD       +P+A++A        VAA       RI   +Y+ I  
Sbjct: 234 IDAVIVGADRIASNGDTANKIGTYPLAIVAKHHGVPFYVAATAKSMDFRIPNGSYIPIEM 293

Query: 281 RRNME----GGLSSSD 316
           R+  E    G L  SD
Sbjct: 294 RKEEEITSFGFLKDSD 309

>TEGU_HHV11 (P10220) Large tegument protein (Virion protein UL36)|
          Length = 3164

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 26/81 (32%), Positives = 39/81 (48%), Gaps = 3/81 (3%)
 Frame = +2

Query: 101  SLLAATLSADKTSVDAATAGLDRISAAGDPRFPIALLAVAAGDGD---QGTRIAAAAYLK 271
            S + A + A +  VDA TA     +AA DP  P+A LA  A       + TR+A  A + 
Sbjct: 1189 STVDAAVRAHRVLVDAVTA---LGAAASDPASPLAFLAAMADSAAGYVKATRLALDARVA 1245

Query: 272  IFARRNMEGGLSSSDLYREFR 334
            I     +  G +++DL  + R
Sbjct: 1246 IAQLTTL--GSAAADLVVQVR 1264

>HAIR_HUMAN (O43593) Protein hairless|
          Length = 1189

 Score = 27.7 bits (60), Expect = 6.9
 Identities = 13/24 (54%), Positives = 14/24 (58%)
 Frame = -3

Query: 359 EAEPEQAGRETPCTDRTTRAPLPC 288
           E  P+ A  ETP  DR  R PLPC
Sbjct: 734 EETPDSA--ETPAEDRAGRGPLPC 755

>XDHD_ECOLI (Q46814) Probable hypoxanthine oxidase xdhD (EC 1.-.-.-)|
          Length = 956

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -1

Query: 346 SKLVAKLPVQIGRREPPFHVAPGENFQVSRGSYSCTLITIPC 221
           S+ VAK+ V++G ++     A   +F+ + G Y    +T+PC
Sbjct: 483 SRHVAKVTVKLGAKKDGRLTAVKMDFRANTGPYGNHSLTVPC 524

>XDHD_ECO57 (Q8XD64) Probable hypoxanthine oxidase xdhD (EC 1.-.-.-)|
          Length = 956

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 13/42 (30%), Positives = 24/42 (57%)
 Frame = -1

Query: 346 SKLVAKLPVQIGRREPPFHVAPGENFQVSRGSYSCTLITIPC 221
           S+ VAK+ V++G ++     A   +F+ + G Y    +T+PC
Sbjct: 483 SRHVAKVTVKLGAKKDGRLTAVKMDFRANTGPYGNHSLTVPC 524

>PLSL_HUMAN (P13796) Plastin-2 (L-plastin) (Lymphocyte cytosolic protein 1)|
           (LCP-1) (LC64P)
          Length = 627

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +2

Query: 215 VAAGDGDQGTRIAAAAYLKIFARRNMEGGLSSSDLYREFR 334
           +A GD DQ  RI+   ++KIF       GL S+D+ + FR
Sbjct: 58  MATGDLDQDGRISFDEFIKIF------HGLKSTDVAKTFR 91

>Y4JQ_RHISN (P55517) Hypothetical 115.9 kDa protein y4jQ|
          Length = 1039

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 18/59 (30%), Positives = 29/59 (49%), Gaps = 1/59 (1%)
 Frame = +2

Query: 146 AATAGLDRISAAG-DPRFPIALLAVAAGDGDQGTRIAAAAYLKIFARRNMEGGLSSSDL 319
           +A+   D ++  G DPR  I L  VAA  GD+G  +    Y+ +    N+ G    S++
Sbjct: 462 SASVTEDEVARIGHDPRVAIGLSRVAASLGDEGQNL---VYIAVEQHLNVRGMSKPSEI 517

>PUR6_METSM (P22348) Probable phosphoribosylaminoimidazole carboxylase (EC|
           4.1.1.21) (AIR carboxylase) (AIRC)
          Length = 339

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 18/63 (28%), Positives = 29/63 (46%)
 Frame = +2

Query: 140 VDAATAGLDRISAAGDPRFPIALLAVAAGDGDQGTRIAAAAYLKIFARRNMEGGLSSSDL 319
           VD   +GLD + ++    +P  +  V    GD G  I AA  L ++     +  L S + 
Sbjct: 88  VDVKVSGLDALYSSVQMPYPSPVATVGIDRGDNGA-ILAARILGLYDEEIRKKVLESKEG 146

Query: 320 YRE 328
           YR+
Sbjct: 147 YRQ 149

>CH60_THEBR (Q60024) 60 kDa chaperonin (Protein Cpn60) (groEL protein)|
          Length = 540

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 19/42 (45%), Positives = 25/42 (59%), Gaps = 1/42 (2%)
 Frame = +2

Query: 137 SVDAATAGLDRISAAGDPRFPIALLA-VAAGDGDQGTRIAAA 259
           +VDAA  GL RIS   D +  IA +A ++A D + G  IA A
Sbjct: 121 AVDAAVEGLKRISKPIDNKESIAHVASISAADEEIGKLIAEA 162


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 36,229,615
Number of Sequences: 219361
Number of extensions: 492833
Number of successful extensions: 1637
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1636
length of database: 80,573,946
effective HSP length: 105
effective length of database: 57,541,041
effective search space used: 1380984984
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)