ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl42f02
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1gb|AY532594.1| Triticum aestivum minichromosomal maintenance fac... 624 e-176
2gb|AY532593.1| Triticum aestivum minichromosomal maintenance fac... 424 e-115
3dbj|AK121422.1| Oryza sativa (japonica cultivar-group) cDNA clon... 216 4e-53
4gb|AC131343.4| Oryza sativa (japonica cultivar-group) chromosome... 180 2e-42
5dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic D... 180 2e-42
6gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome... 180 2e-42
7ref|XM_741980.1| Aspergillus fumigatus Af293 hypothetical protei... 44 0.37
8gb|BT015953.1| Drosophila melanogaster SD09647 full insert cDNA 42 1.4
9gb|BT025193.1| Drosophila melanogaster FI01127 full insert cDNA 42 1.4
10emb|CR555306.1| Azoarcus sp. EbN1 complete genome 42 1.4
11gb|AC023740.4| Drosophila melanogaster X BAC RP98-27J18 (Roswell... 42 1.4
12gb|AC090097.5| Homo sapiens chromosome 8, clone RP11-369C6, comp... 42 1.4
13gb|AC092472.3| Homo sapiens chromosome 8 clone RP1-96P7 map map ... 42 1.4
14ref|NM_132004.2| Drosophila melanogaster CG4136-RA (CG4136), mRNA 42 1.4
15gb|AY070708.1| Drosophila melanogaster SD01032 full length cDNA 42 1.4
16gb|AC008863.8| Homo sapiens chromosome 5 clone CTD-2192G22, comp... 42 1.4
17emb|AJ234640.1|HVU234640 Hordeum vulgare genomic DNA fragment; c... 42 1.4
18gb|AE003434.4| Drosophila melanogaster chromosome X, section 18 ... 42 1.4
19gb|AC122486.4| Mus musculus BAC clone RP24-380B9 from 12, comple... 42 1.4
20dbj|AP006418.1| Lotus japonicus genomic DNA, chromosome 6, clone... 42 1.4
21gb|AC153501.2| Mus musculus 10 BAC RP23-79J15 (Roswell Park Canc... 40 5.7
22ref|XM_476102.1| Oryza sativa (japonica cultivar-group), predic... 40 5.7
23gb|AC136520.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.7
24ref|XM_463817.1| Oryza sativa (japonica cultivar-group), mRNA 40 5.7
25ref|NM_189357.1| Oryza sativa (japonica cultivar-group), predic... 40 5.7
26gb|AY466854.1| Macaca mulatta low density lipoprotein receptor (... 40 5.7
27gb|AC136519.3| Oryza sativa (japonica cultivar-group) chromosome... 40 5.7
28gb|AC129718.2| Oryza sativa (japonica cultivar-group) chromosome... 40 5.7
29gb|AY641547.1| Halomonas maura nitrate-reductase operon, complet... 40 5.7
30gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, c... 40 5.7
31ref|NM_001032906.1| Macaca mulatta low density lipoprotein recep... 40 5.7
32ref|XM_883457.1| Leishmania major strain Friedlin hypothetical p... 40 5.7
33gb|AC121858.3| Mus musculus BAC clone RP24-104B23 from chromosom... 40 5.7
34emb|AL139794.3|LMFLCHR4B Leishmania major Friedlin chromosome 4,... 40 5.7
35gb|DP000063.1| Oryctolagus cuniculus target 117 genomic scaffold 40 5.7
36dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
37dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
38dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
39dbj|AP003238.4| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
40dbj|AP003263.2| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
41gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome 40 5.7
42dbj|AP003241.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
43dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete ge... 40 5.7
44dbj|AP004752.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
45dbj|AP004769.3| Oryza sativa (japonica cultivar-group) genomic D... 40 5.7
46dbj|AK069014.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.7
47dbj|AK063319.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.7
48dbj|AK063280.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 5.7
49gb|AY111848.1| Zea mays CL12933_1 mRNA sequence 40 5.7
50emb|AL590988.11| Mouse DNA sequence from clone RP23-46C18 on chr... 40 5.7 
>gb|AY532594.1| Triticum aestivum minichromosomal maintenance factor (MCM2) mRNA,
           complete cds
          Length = 2923

 Score =  624 bits (315), Expect = e-176
 Identities = 364/379 (96%), Gaps = 1/379 (0%)
 Strand = Plus / Plus

                                                                       
Query: 47  cacgcctcctccacaggacccttctcggagcccgcggatggacgactcggagaacaacgc 106
           ||||| |||||||||||| ||| ||| || ||||||||||||||||||||||||||||||
Sbjct: 4   cacgcgtcctccacaggagcctcctccga-cccgcggatggacgactcggagaacaacgc 62

                                                                       
Query: 107 gccgtcgaccccgggctcgccgggtttcagcaccgaccggctgccgcccaacaccaccac 166
           |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 63  gccgtcgaccccgggctcgccgggcttcagcaccgaccggctgccgcccaacaccaccac 122

                                                                       
Query: 167 cagccgcggcgccaccgacccgtcctcctgctcggacgacgatggcgaggcggaggtcga 226
           ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 123 cagccgcggcgccaccgacccgtcctcctactcggacgacgatggcgaggcggaggtcga 182

                                                                       
Query: 227 ccccaatgtgctccccgaggacgacggcgccaccgttatccgcgacgaggaggaaggcga 286
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 183 ccccaatgtgctccccgaggacgacggcgccaccgttatccgcgacgaggaggaagacga 242

                                                                       
Query: 287 cggggaagacctcttcaacgacgactacctcaatgattaccggagaatggatgagcagga 346
            ||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 243 tggggaggacctcttcaacgacgactacctcaatgattaccgaagaatggatgagcagga 302

                                                                       
Query: 347 tcactatgagtccgttgggttagatgactccatagaggatgagaggaacctggatgagat 406
           ||| |||||||| ||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 303 tcagtatgagtcggttgggttagacgactcgatagaggatgagaggaacctggatgagat 362

                              
Query: 407 catggctgatcgaagggct 425
           |||||||||||||||||||
Sbjct: 363 catggctgatcgaagggct 381
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>gb|AY532593.1| Triticum aestivum minichromosomal maintenance factor (MCM2) gene,
            exons 1 through 18 and complete sequence
          Length = 8809

 Score =  424 bits (214), Expect = e-115
 Identities = 229/234 (97%)
 Strand = Plus / Plus

                                                                        
Query: 86   ggacgactcggagaacaacgcgccgtcgaccccgggctcgccgggtttcagcaccgaccg 145
            ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 2395 ggacgactcggagaacaacgcgccgtcgaccccgggctcgccgggcttcagcaccgaccg 2454

                                                                        
Query: 146  gctgccgcccaacaccaccaccagccgcggcgccaccgacccgtcctcctgctcggacga 205
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 2455 gctgccgcccaacaccaccaccagccgcggcgccaccgacccgtcctcctactcggacga 2514

                                                                        
Query: 206  cgatggcgaggcggaggtcgaccccaatgtgctccccgaggacgacggcgccaccgttat 265
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2515 cgatggcgaggcggaggtcgaccccaatgtgctccccgaggacgacggcgccaccgttat 2574

                                                                  
Query: 266  ccgcgacgaggaggaaggcgacggggaagacctcttcaacgacgactacctcaa 319
            ||||||||||||||||| ||| ||||| ||||||||||||||||||||||||||
Sbjct: 2575 ccgcgacgaggaggaagacgatggggaggacctcttcaacgacgactacctcaa 2628



 Score =  165 bits (83), Expect = 1e-37
 Identities = 98/103 (95%)
 Strand = Plus / Plus

                                                                        
Query: 323  ttaccggagaatggatgagcaggatcactatgagtccgttgggttagatgactccataga 382
            |||||| |||||||||||||||||||| |||||||| ||||||||||| ||||| |||||
Sbjct: 3388 ttaccgaagaatggatgagcaggatcagtatgagtcggttgggttagacgactcgataga 3447

                                                       
Query: 383  ggatgagaggaacctggatgagatcatggctgatcgaagggct 425
            |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3448 ggatgagaggaacctggatgagatcatggctgatcgaagggct 3490



 Score = 71.9 bits (36), Expect = 2e-09
 Identities = 72/84 (85%)
 Strand = Plus / Plus

                                                                        
Query: 4    attccccccttcccgccgaaaccctagcctcatctcgccaccgcacgcctcctccacagg 63
            |||||||||||||||||||||||||||||||  | | |  || ||||| |||||||||||
Sbjct: 2199 attccccccttcccgccgaaaccctagcctcggcgcacagccacacgcgtcctccacagg 2258

                                    
Query: 64   acccttctcggagcccgcggatgg 87
            | ||| ||| || |||||||||||
Sbjct: 2259 agcctcctccgaccccgcggatgg 2282
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>dbj|AK121422.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023133N01, full
           insert sequence
          Length = 3214

 Score =  216 bits (109), Expect = 4e-53
 Identities = 188/213 (88%), Gaps = 6/213 (2%)
 Strand = Plus / Plus

                                                                       
Query: 213 gaggcggaggtcgaccccaatgtgctccccgaggacgacggcgccaccgttatccgcgac 272
           |||||||||||||||||||| |||||||||||||||||||||| |  ||    ||||  |
Sbjct: 234 gaggcggaggtcgaccccaacgtgctccccgaggacgacggcgtcgtcg----ccgc--c 287

                                                                       
Query: 273 gaggaggaaggcgacggggaagacctcttcaacgacgactacctcaatgattaccggaga 332
           |||||||| |  |||||||| ||||||||||||||| |||||||| ||||||||||||| 
Sbjct: 288 gaggaggaggaggacggggaggacctcttcaacgacaactacctcgatgattaccggagg 347

                                                                       
Query: 333 atggatgagcaggatcactatgagtccgttgggttagatgactccatagaggatgagagg 392
           |||||||||||||| || ||||| || ||||||||||||||||| ||||||||||| |||
Sbjct: 348 atggatgagcaggaccagtatgaatcggttgggttagatgactcgatagaggatgaaagg 407

                                            
Query: 393 aacctggatgagatcatggctgatcgaagggct 425
           |||||||||||||||||||| ||| ||||||||
Sbjct: 408 aacctggatgagatcatggcagatagaagggct 440



 Score =  186 bits (94), Expect = 4e-44
 Identities = 118/126 (93%)
 Strand = Plus / Plus

                                                                       
Query: 83  gatggacgactcggagaacaacgcgccgtcgaccccgggctcgccgggtttcagcaccga 142
           |||||| |||||||||||||||||||||||||| ||||| |||||||| |||||||| ||
Sbjct: 83  gatggatgactcggagaacaacgcgccgtcgacgccggggtcgccggggttcagcacaga 142

                                                                       
Query: 143 ccggctgccgcccaacaccaccaccagccgcggcgccaccgacccgtcctcctgctcgga 202
           | |||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 143 caggctgccgccgaacaccaccaccagccgcggcgccaccgacccgtcctcctactcgga 202

                 
Query: 203 cgacga 208
           ||||||
Sbjct: 203 cgacga 208
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>gb|AC131343.4| Oryza sativa (japonica cultivar-group) chromosome 11 clone
             OSJNBa0057E15, complete sequence
          Length = 149035

 Score =  180 bits (91), Expect = 2e-42
 Identities = 112/119 (94%)
 Strand = Plus / Plus

                                                                         
Query: 90    gactcggagaacaacgcgccgtcgaccccgggctcgccgggtttcagcaccgaccggctg 149
             |||||||||||||||||||||||||| ||||| |||||||| |||||||| ||| |||||
Sbjct: 97266 gactcggagaacaacgcgccgtcgacgccggggtcgccggggttcagcacagacaggctg 97325

                                                                        
Query: 150   ccgcccaacaccaccaccagccgcggcgccaccgacccgtcctcctgctcggacgacga 208
             ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 97326 ccgccgaacaccaccaccagccgcggcgccaccgacccgtcctcctactcggacgacga 97384



 Score =  139 bits (70), Expect = 8e-30
 Identities = 97/106 (91%)
 Strand = Plus / Plus

                                                                         
Query: 320   tgattaccggagaatggatgagcaggatcactatgagtccgttgggttagatgactccat 379
             |||||||||||| |||||||||||||| || ||||| || ||||||||||||||||| ||
Sbjct: 98224 tgattaccggaggatggatgagcaggaccagtatgaatcggttgggttagatgactcgat 98283

                                                           
Query: 380   agaggatgagaggaacctggatgagatcatggctgatcgaagggct 425
             ||||||||| ||||||||||||||||||||||| ||| ||||||||
Sbjct: 98284 agaggatgaaaggaacctggatgagatcatggcagatagaagggct 98329



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 90/105 (85%), Gaps = 6/105 (5%)
 Strand = Plus / Plus

                                                                         
Query: 213   gaggcggaggtcgaccccaatgtgctccccgaggacgacggcgccaccgttatccgcgac 272
             |||||||||||||||||||| |||||||||||||||||||||| |  ||    ||||  |
Sbjct: 97410 gaggcggaggtcgaccccaacgtgctccccgaggacgacggcgtcgtcg----ccgc--c 97463

                                                          
Query: 273   gaggaggaaggcgacggggaagacctcttcaacgacgactacctc 317
             |||||||| |  |||||||| ||||||||||||||| ||||||||
Sbjct: 97464 gaggaggaggaggacggggaggacctcttcaacgacaactacctc 97508
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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score =  180 bits (91), Expect = 2e-42
 Identities = 112/119 (94%)
 Strand = Plus / Plus

                                                                            
Query: 90       gactcggagaacaacgcgccgtcgaccccgggctcgccgggtttcagcaccgaccggctg 149
                |||||||||||||||||||||||||| ||||| |||||||| |||||||| ||| |||||
Sbjct: 16456667 gactcggagaacaacgcgccgtcgacgccggggtcgccggggttcagcacagacaggctg 16456726

                                                                           
Query: 150      ccgcccaacaccaccaccagccgcggcgccaccgacccgtcctcctgctcggacgacga 208
                ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 16456727 ccgccgaacaccaccaccagccgcggcgccaccgacccgtcctcctactcggacgacga 16456785



 Score =  139 bits (70), Expect = 8e-30
 Identities = 97/106 (91%)
 Strand = Plus / Plus

                                                                            
Query: 320      tgattaccggagaatggatgagcaggatcactatgagtccgttgggttagatgactccat 379
                |||||||||||| |||||||||||||| || ||||| || ||||||||||||||||| ||
Sbjct: 16457625 tgattaccggaggatggatgagcaggaccagtatgaatcggttgggttagatgactcgat 16457684

                                                              
Query: 380      agaggatgagaggaacctggatgagatcatggctgatcgaagggct 425
                ||||||||| ||||||||||||||||||||||| ||| ||||||||
Sbjct: 16457685 agaggatgaaaggaacctggatgagatcatggcagatagaagggct 16457730



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 90/105 (85%), Gaps = 6/105 (5%)
 Strand = Plus / Plus

                                                                            
Query: 213      gaggcggaggtcgaccccaatgtgctccccgaggacgacggcgccaccgttatccgcgac 272
                |||||||||||||||||||| |||||||||||||||||||||| |  ||    ||||  |
Sbjct: 16456811 gaggcggaggtcgaccccaacgtgctccccgaggacgacggcgtcgtcg----ccgc--c 16456864

                                                             
Query: 273      gaggaggaaggcgacggggaagacctcttcaacgacgactacctc 317
                |||||||| |  |||||||| ||||||||||||||| ||||||||
Sbjct: 16456865 gaggaggaggaggacggggaggacctcttcaacgacaactacctc 16456909
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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score =  180 bits (91), Expect = 2e-42
 Identities = 112/119 (94%)
 Strand = Plus / Plus

                                                                            
Query: 90       gactcggagaacaacgcgccgtcgaccccgggctcgccgggtttcagcaccgaccggctg 149
                |||||||||||||||||||||||||| ||||| |||||||| |||||||| ||| |||||
Sbjct: 16547671 gactcggagaacaacgcgccgtcgacgccggggtcgccggggttcagcacagacaggctg 16547730

                                                                           
Query: 150      ccgcccaacaccaccaccagccgcggcgccaccgacccgtcctcctgctcggacgacga 208
                ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 16547731 ccgccgaacaccaccaccagccgcggcgccaccgacccgtcctcctactcggacgacga 16547789



 Score =  139 bits (70), Expect = 8e-30
 Identities = 97/106 (91%)
 Strand = Plus / Plus

                                                                            
Query: 320      tgattaccggagaatggatgagcaggatcactatgagtccgttgggttagatgactccat 379
                |||||||||||| |||||||||||||| || ||||| || ||||||||||||||||| ||
Sbjct: 16548629 tgattaccggaggatggatgagcaggaccagtatgaatcggttgggttagatgactcgat 16548688

                                                              
Query: 380      agaggatgagaggaacctggatgagatcatggctgatcgaagggct 425
                ||||||||| ||||||||||||||||||||||| ||| ||||||||
Sbjct: 16548689 agaggatgaaaggaacctggatgagatcatggcagatagaagggct 16548734



 Score = 81.8 bits (41), Expect = 2e-12
 Identities = 90/105 (85%), Gaps = 6/105 (5%)
 Strand = Plus / Plus

                                                                            
Query: 213      gaggcggaggtcgaccccaatgtgctccccgaggacgacggcgccaccgttatccgcgac 272
                |||||||||||||||||||| |||||||||||||||||||||| |  ||    ||||  |
Sbjct: 16547815 gaggcggaggtcgaccccaacgtgctccccgaggacgacggcgtcgtcg----ccgc--c 16547868

                                                             
Query: 273      gaggaggaaggcgacggggaagacctcttcaacgacgactacctc 317
                |||||||| |  |||||||| ||||||||||||||| ||||||||
Sbjct: 16547869 gaggaggaggaggacggggaggacctcttcaacgacaactacctc 16547913
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>ref|XM_741980.1| Aspergillus fumigatus Af293 hypothetical protein (Afu8g01330)
           partial mRNA
          Length = 708

 Score = 44.1 bits (22), Expect = 0.37
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 267 cgcgacgaggaggaaggcgacg 288
           ||||||||||||||||||||||
Sbjct: 295 cgcgacgaggaggaaggcgacg 316
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>gb|BT015953.1| Drosophila melanogaster SD09647 full insert cDNA
          Length = 2972

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 167  cagccgcggcgccaccgacccgtcctcct 195
            ||||| ||||||||||||| |||||||||
Sbjct: 1752 cagccacggcgccaccgactcgtcctcct 1724
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>gb|BT025193.1| Drosophila melanogaster FI01127 full insert cDNA
          Length = 2971

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 167  cagccgcggcgccaccgacccgtcctcct 195
            ||||| ||||||||||||| |||||||||
Sbjct: 1752 cagccacggcgccaccgactcgtcctcct 1724
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>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                    
Query: 203     cgacgatggcgaggcggaggt 223
               |||||||||||||||||||||
Sbjct: 1468047 cgacgatggcgaggcggaggt 1468027
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>gb|AC023740.4| Drosophila melanogaster X BAC RP98-27J18 (Roswell Park Cancer Institute
             Drosophila BAC Library) complete sequence
          Length = 163764

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                          
Query: 167   cagccgcggcgccaccgacccgtcctcct 195
             ||||| ||||||||||||| |||||||||
Sbjct: 58418 cagccacggcgccaccgactcgtcctcct 58390
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>gb|AC090097.5| Homo sapiens chromosome 8, clone RP11-369C6, complete sequence
          Length = 170973

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 381   gaggatgagaggaacctggat 401
             |||||||||||||||||||||
Sbjct: 91539 gaggatgagaggaacctggat 91519
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>gb|AC092472.3| Homo sapiens chromosome 8 clone RP1-96P7 map map 8p21-p11, complete
              sequence
          Length = 167794

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 381    gaggatgagaggaacctggat 401
              |||||||||||||||||||||
Sbjct: 146103 gaggatgagaggaacctggat 146083
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>ref|NM_132004.2| Drosophila melanogaster CG4136-RA (CG4136), mRNA
          Length = 2983

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 167  cagccgcggcgccaccgacccgtcctcct 195
            ||||| ||||||||||||| |||||||||
Sbjct: 1765 cagccacggcgccaccgactcgtcctcct 1737
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>gb|AY070708.1| Drosophila melanogaster SD01032 full length cDNA
          Length = 2647

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                         
Query: 167  cagccgcggcgccaccgacccgtcctcct 195
            ||||| ||||||||||||| |||||||||
Sbjct: 1429 cagccacggcgccaccgactcgtcctcct 1401
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>gb|AC008863.8| Homo sapiens chromosome 5 clone CTD-2192G22, complete sequence
          Length = 152529

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 381    gaggatgagaggaacctggat 401
              |||||||||||||||||||||
Sbjct: 114816 gaggatgagaggaacctggat 114796
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>emb|AJ234640.1|HVU234640 Hordeum vulgare genomic DNA fragment; clone MWG0904.rev
          Length = 416

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                    
Query: 158 caccaccaccagccgcggcgccacc 182
           |||||||||||||| ||||||||||
Sbjct: 305 caccaccaccagccacggcgccacc 281
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>gb|AE003434.4| Drosophila melanogaster chromosome X, section 18 of 74 of the complete
              sequence
          Length = 303928

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 167    cagccgcggcgccaccgacccgtcctcct 195
              ||||| ||||||||||||| |||||||||
Sbjct: 287799 cagccacggcgccaccgactcgtcctcct 287771
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>gb|AC122486.4| Mus musculus BAC clone RP24-380B9 from 12, complete sequence
          Length = 128253

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 333    atggatgagcaggatcactat 353
              |||||||||||||||||||||
Sbjct: 108319 atggatgagcaggatcactat 108339
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>dbj|AP006418.1| Lotus japonicus genomic DNA, chromosome 6, clone:LjT23A02, TM0306,
             complete sequence
          Length = 62713

 Score = 42.1 bits (21), Expect = 1.4
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 11    ccttcccgccgaaaccctagcctca 35
             |||||||| ||||||||||||||||
Sbjct: 47783 ccttcccgtcgaaaccctagcctca 47807
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>gb|AC153501.2| Mus musculus 10 BAC RP23-79J15 (Roswell Park Cancer Institute (C57BL/6J
             Female) Mouse BAC Library) complete sequence
          Length = 251631

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 370   atgactccatagaggatgag 389
             ||||||||||||||||||||
Sbjct: 52421 atgactccatagaggatgag 52440
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>ref|XM_476102.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1173

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 268 gcgacgaggaggaaggcgacggggaaga 295
           |||||||||||| ||||||||| |||||
Sbjct: 197 gcgacgaggaggcaggcgacggagaaga 170
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>gb|AC136520.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone
             OSJNBa0017O06, complete sequence
          Length = 151656

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                         
Query: 268   gcgacgaggaggaaggcgacggggaaga 295
             |||||||||||| ||||||||| |||||
Sbjct: 61429 gcgacgaggaggcaggcgacggagaaga 61456
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>ref|XM_463817.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2162

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 266 ccgcgacgaggaggaaggcgacgg 289
           ||||||||||| ||||||||||||
Sbjct: 173 ccgcgacgaggtggaaggcgacgg 150
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>ref|NM_189357.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 1632

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 176 cgccaccgacccgtcctcct 195
           ||||||||||||||||||||
Sbjct: 843 cgccaccgacccgtcctcct 824
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>gb|AY466854.1| Macaca mulatta low density lipoprotein receptor (LDLR) mRNA,
           complete cds
          Length = 2562

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 266 ccgcgacgaggaggaaggcgacgg 289
           ||||| ||||||||||||||||||
Sbjct: 55  ccgcggcgaggaggaaggcgacgg 32
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>gb|AC136519.3| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0007C23,
              complete sequence
          Length = 173764

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                          
Query: 268    gcgacgaggaggaaggcgacggggaaga 295
              |||||||||||| ||||||||| |||||
Sbjct: 161413 gcgacgaggaggcaggcgacggagaaga 161440
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>gb|AC129718.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0088I06,
              complete sequence
          Length = 187651

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 189    tcctcctgctcggacgacga 208
              ||||||||||||||||||||
Sbjct: 160760 tcctcctgctcggacgacga 160741
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>gb|AY641547.1| Halomonas maura nitrate-reductase operon, complete sequence
          Length = 8823

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 242  cgaggacgacggcgccaccg 261
            ||||||||||||||||||||
Sbjct: 3486 cgaggacgacggcgccaccg 3505
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>gb|CP000080.1| Leishmania major strain Friedlin chromosome 29, complete sequence
          Length = 1212674

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 157    acaccaccaccagccgcggc 176
              ||||||||||||||||||||
Sbjct: 653840 acaccaccaccagccgcggc 653821
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>ref|NM_001032906.1| Macaca mulatta low density lipoprotein receptor (LDLR), mRNA
          Length = 2562

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 266 ccgcgacgaggaggaaggcgacgg 289
           ||||| ||||||||||||||||||
Sbjct: 55  ccgcggcgaggaggaaggcgacgg 32
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>ref|XM_883457.1| Leishmania major strain Friedlin hypothetical protein (P1105.02)
           partial mRNA
          Length = 507

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 197 ctcggacgacgatggcgagg 216
           ||||||||||||||||||||
Sbjct: 480 ctcggacgacgatggcgagg 499
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>gb|AC121858.3| Mus musculus BAC clone RP24-104B23 from chromosome 8, complete sequence
          Length = 177226

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 52    ctcctccacaggacccttct 71
             ||||||||||||||||||||
Sbjct: 72162 ctcctccacaggacccttct 72181
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>emb|AL139794.3|LMFLCHR4B Leishmania major Friedlin chromosome 4, right end
          Length = 247462

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 197   ctcggacgacgatggcgagg 216
             ||||||||||||||||||||
Sbjct: 28849 ctcggacgacgatggcgagg 28830
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>gb|DP000063.1| Oryctolagus cuniculus target 117 genomic scaffold
          Length = 489372

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 273    gaggaggaaggcgacgggga 292
              ||||||||||||||||||||
Sbjct: 425112 gaggaggaaggcgacgggga 425131
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 189      tcctcctgctcggacgacga 208
                ||||||||||||||||||||
Sbjct: 24092271 tcctcctgctcggacgacga 24092252



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 268     gcgacgaggaggaaggcgacggggaaga 295
               |||||||||||| ||||||||| |||||
Sbjct: 6113860 gcgacgaggaggcaggcgacggagaaga 6113887
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2,
              complete sequence
          Length = 35954743

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 266    ccgcgacgaggaggaaggcgacgg 289
              ||||||||||| ||||||||||||
Sbjct: 538036 ccgcgacgaggtggaaggcgacgg 538059
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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 176      cgccaccgacccgtcctcct 195
                ||||||||||||||||||||
Sbjct: 42357219 cgccaccgacccgtcctcct 42357238



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 272      cgaggaggaaggcgacggggaaga 295
                |||||||||||| |||||||||||
Sbjct: 36097537 cgaggaggaaggagacggggaaga 36097560
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>dbj|AP003238.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0401G10
          Length = 160704

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 176    cgccaccgacccgtcctcct 195
              ||||||||||||||||||||
Sbjct: 129176 cgccaccgacccgtcctcct 129195
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>dbj|AP003263.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0483G10
          Length = 190721

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 176   cgccaccgacccgtcctcct 195
             ||||||||||||||||||||
Sbjct: 16557 cgccaccgacccgtcctcct 16576
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>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome
          Length = 5013479

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                           
Query: 164     caccagccgcggcgccaccgacccgtcc 191
               ||||||||||| |||||||||| |||||
Sbjct: 2859792 caccagccgcgccgccaccgacgcgtcc 2859819



 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 158     caccaccaccagccgcggcg 177
               ||||||||||||||||||||
Sbjct: 1645167 caccaccaccagccgcggcg 1645186
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>dbj|AP003241.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0408C03
          Length = 141273

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 272    cgaggaggaaggcgacggggaaga 295
              |||||||||||| |||||||||||
Sbjct: 110262 cgaggaggaaggagacggggaaga 110285
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>dbj|BA000043.1| Geobacillus kaustophilus HTA426 DNA, complete genome
          Length = 3544776

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 78      ccgcggatggacgactcgga 97
               ||||||||||||||||||||
Sbjct: 2043809 ccgcggatggacgactcgga 2043828
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>dbj|AP004752.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0501G04
          Length = 156603

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 266   ccgcgacgaggaggaaggcgacgg 289
             ||||||||||| ||||||||||||
Sbjct: 16089 ccgcgacgaggtggaaggcgacgg 16112
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>dbj|AP004769.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0017C12
          Length = 135356

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 266    ccgcgacgaggaggaaggcgacgg 289
              ||||||||||| ||||||||||||
Sbjct: 134277 ccgcgacgaggtggaaggcgacgg 134300
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>dbj|AK069014.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013170A02, full
           insert sequence
          Length = 2162

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 266 ccgcgacgaggaggaaggcgacgg 289
           ||||||||||| ||||||||||||
Sbjct: 172 ccgcgacgaggtggaaggcgacgg 149
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>dbj|AK063319.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-G12, full
           insert sequence
          Length = 1621

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 268 gcgacgaggaggaaggcgacggggaaga 295
           |||||||||||| ||||||||| |||||
Sbjct: 319 gcgacgaggaggcaggcgacggagaaga 292
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>dbj|AK063280.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-113-C10, full
           insert sequence
          Length = 1770

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                       
Query: 268 gcgacgaggaggaaggcgacggggaaga 295
           |||||||||||| ||||||||| |||||
Sbjct: 319 gcgacgaggaggcaggcgacggagaaga 292
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>gb|AY111848.1| Zea mays CL12933_1 mRNA sequence
          Length = 632

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 405 atcatggctgatcgaagggc 424
           ||||||||||||||||||||
Sbjct: 27  atcatggctgatcgaagggc 46
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>emb|AL590988.11| Mouse DNA sequence from clone RP23-46C18 on chromosome 8, complete
              sequence
          Length = 183975

 Score = 40.1 bits (20), Expect = 5.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 52     ctcctccacaggacccttct 71
              ||||||||||||||||||||
Sbjct: 181578 ctcctccacaggacccttct 181597


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,042,914
Number of Sequences: 3902068
Number of extensions: 3042914
Number of successful extensions: 70469
Number of sequences better than 10.0: 50
Number of HSP's better than 10.0 without gapping: 52
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 69727
Number of HSP's gapped (non-prelim): 741
length of query: 425
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 403
effective length of database: 17,147,199,772
effective search space: 6910321508116
effective search space used: 6910321508116
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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