ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl42f01 |
|---|---|
| Clone Library Name | barley_pub |
>dbj|AK102218.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033087L08, full insert sequence Length = 3325 Score = 283 bits (143), Expect = 2e-73 Identities = 301/354 (85%) Strand = Plus / Plus Query: 48 ccggtggccagttctgctggtgcctcatcacctgctatgcaaattaatatagtaagcata 107 ||||| || |||||||| || |||| ||||||||||||||| |||| | | |||||| Sbjct: 137 ccggttgcaagttctgcaggaccctcgtcacctgctatgcaagctaatgttgccagcata 196 Query: 108 gattggctgggtaacagacaggcttccagggttgattcctcatcacacgttgcaccacat 167 |||||| ||||| |||||| |||||||| ||||||||||||||||| ||||| || ||| Sbjct: 197 gattggtcgggtagcagacaagcttccagagttgattcctcatcacatgttgctccgcat 256 Query: 168 gcctatgggcctgctcatagctttgatgctgctggaactgctttggattctgcaccatct 227 ||| || |||| ||||||| || ||||| ||||||||||||||||||||||||| || Sbjct: 257 gcccatcagccttctcatagtttcgatgccactggaactgctttggattctgcaccgtca 316 Query: 228 tgtagaccatgggagcgtggagacttacttcgtcgactggcaacattcaaaccttcaact 287 ||||| |||||||| || |||||||||||||||||||||||||||| || ||| ||||| Sbjct: 317 tgtaggccatgggaacgcggagacttacttcgtcgactggcaacatataagcctacaact 376 Query: 288 tgggatgctaagccgaaggctgctagttcattggcttgttctcanagaggctgggtaaat 347 |||| | ||| ||| |||||||||||||| ||||||||| ||| ||||| ||||| || Sbjct: 377 tgggcttctaggcctaaggctgctagttctttggcttgtgctcggagaggttgggttaac 436 Query: 348 gttgatatggacaaaattgaatgtgaatcatgtggtgcgcatcttatattcagt 401 ||||| ||||||||||||||||| || ||||||||||| ||||| ||||||||| Sbjct: 437 gttgacatggacaaaattgaatgcgagtcatgtggtgcacatctcatattcagt 490
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 190 bits (96), Expect = 2e-45 Identities = 201/236 (85%) Strand = Plus / Minus Query: 56 cagttctgctggtgcctcatcacctgctatgcaaattaatatagtaagcatagattggct 115 ||||||||| || |||| ||||||||||||||| |||| | | |||||||||||| Sbjct: 32294223 cagttctgcaggaccctcgtcacctgctatgcaagctaatgttgccagcatagattggtc 32294164 Query: 116 gggtaacagacaggcttccagggttgattcctcatcacacgttgcaccacatgcctatgg 175 ||||| |||||| |||||||| ||||||||||||||||| ||||| || |||||| || Sbjct: 32294163 gggtagcagacaagcttccagagttgattcctcatcacatgttgctccgcatgcccatca 32294104 Query: 176 gcctgctcatagctttgatgctgctggaactgctttggattctgcaccatcttgtagacc 235 |||| ||||||| || ||||| ||||||||||||||||||||||||| || ||||| || Sbjct: 32294103 gccttctcatagtttcgatgccactggaactgctttggattctgcaccgtcatgtaggcc 32294044 Query: 236 atgggagcgtggagacttacttcgtcgactggcaacattcaaaccttcaacttggg 291 |||||| || |||||||||||||||||||||||||||| || ||| ||||||||| Sbjct: 32294043 atgggaacgcggagacttacttcgtcgactggcaacatataagcctacaacttggg 32293988 Score = 101 bits (51), Expect = 2e-18 Identities = 86/98 (87%) Strand = Plus / Minus Query: 304 aggctgctagttcattggcttgttctcanagaggctgggtaaatgttgatatggacaaaa 363 ||||||||||||| ||||||||| ||| ||||| ||||| || ||||| |||||||||| Sbjct: 32293368 aggctgctagttctttggcttgtgctcggagaggttgggttaacgttgacatggacaaaa 32293309 Query: 364 ttgaatgtgaatcatgtggtgcgcatcttatattcagt 401 ||||||| || ||||||||||| ||||| ||||||||| Sbjct: 32293308 ttgaatgcgagtcatgtggtgcacatctcatattcagt 32293271
>gb|AC133340.4| Oryza sativa chromosome 3 BAC clone OSJNBb0024J17, complete sequence Length = 102751 Score = 190 bits (96), Expect = 2e-45 Identities = 201/236 (85%) Strand = Plus / Minus Query: 56 cagttctgctggtgcctcatcacctgctatgcaaattaatatagtaagcatagattggct 115 ||||||||| || |||| ||||||||||||||| |||| | | |||||||||||| Sbjct: 27990 cagttctgcaggaccctcgtcacctgctatgcaagctaatgttgccagcatagattggtc 27931 Query: 116 gggtaacagacaggcttccagggttgattcctcatcacacgttgcaccacatgcctatgg 175 ||||| |||||| |||||||| ||||||||||||||||| ||||| || |||||| || Sbjct: 27930 gggtagcagacaagcttccagagttgattcctcatcacatgttgctccgcatgcccatca 27871 Query: 176 gcctgctcatagctttgatgctgctggaactgctttggattctgcaccatcttgtagacc 235 |||| ||||||| || ||||| ||||||||||||||||||||||||| || ||||| || Sbjct: 27870 gccttctcatagtttcgatgccactggaactgctttggattctgcaccgtcatgtaggcc 27811 Query: 236 atgggagcgtggagacttacttcgtcgactggcaacattcaaaccttcaacttggg 291 |||||| || |||||||||||||||||||||||||||| || ||| ||||||||| Sbjct: 27810 atgggaacgcggagacttacttcgtcgactggcaacatataagcctacaacttggg 27755 Score = 101 bits (51), Expect = 2e-18 Identities = 86/98 (87%) Strand = Plus / Minus Query: 304 aggctgctagttcattggcttgttctcanagaggctgggtaaatgttgatatggacaaaa 363 ||||||||||||| ||||||||| ||| ||||| ||||| || ||||| |||||||||| Sbjct: 27135 aggctgctagttctttggcttgtgctcggagaggttgggttaacgttgacatggacaaaa 27076 Query: 364 ttgaatgtgaatcatgtggtgcgcatcttatattcagt 401 ||||||| || ||||||||||| ||||| ||||||||| Sbjct: 27075 ttgaatgcgagtcatgtggtgcacatctcatattcagt 27038
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 190 bits (96), Expect = 2e-45 Identities = 201/236 (85%) Strand = Plus / Minus Query: 56 cagttctgctggtgcctcatcacctgctatgcaaattaatatagtaagcatagattggct 115 ||||||||| || |||| ||||||||||||||| |||| | | |||||||||||| Sbjct: 32384733 cagttctgcaggaccctcgtcacctgctatgcaagctaatgttgccagcatagattggtc 32384674 Query: 116 gggtaacagacaggcttccagggttgattcctcatcacacgttgcaccacatgcctatgg 175 ||||| |||||| |||||||| ||||||||||||||||| ||||| || |||||| || Sbjct: 32384673 gggtagcagacaagcttccagagttgattcctcatcacatgttgctccgcatgcccatca 32384614 Query: 176 gcctgctcatagctttgatgctgctggaactgctttggattctgcaccatcttgtagacc 235 |||| ||||||| || ||||| ||||||||||||||||||||||||| || ||||| || Sbjct: 32384613 gccttctcatagtttcgatgccactggaactgctttggattctgcaccgtcatgtaggcc 32384554 Query: 236 atgggagcgtggagacttacttcgtcgactggcaacattcaaaccttcaacttggg 291 |||||| || |||||||||||||||||||||||||||| || ||| ||||||||| Sbjct: 32384553 atgggaacgcggagacttacttcgtcgactggcaacatataagcctacaacttggg 32384498 Score = 101 bits (51), Expect = 2e-18 Identities = 86/98 (87%) Strand = Plus / Minus Query: 304 aggctgctagttcattggcttgttctcanagaggctgggtaaatgttgatatggacaaaa 363 ||||||||||||| ||||||||| ||| ||||| ||||| || ||||| |||||||||| Sbjct: 32383878 aggctgctagttctttggcttgtgctcggagaggttgggttaacgttgacatggacaaaa 32383819 Query: 364 ttgaatgtgaatcatgtggtgcgcatcttatattcagt 401 ||||||| || ||||||||||| ||||| ||||||||| Sbjct: 32383818 ttgaatgcgagtcatgtggtgcacatctcatattcagt 32383781
>ref|XM_476650.1| Oryza sativa (japonica cultivar-group), mRNA Length = 3250 Score = 163 bits (82), Expect = 5e-37 Identities = 153/177 (86%) Strand = Plus / Plus Query: 221 accatcttgtagaccatgggagcgtggagacttacttcgtcgactggcaacattcaaacc 280 ||||||||||||||||||||| || |||||||| ||||| |||||||| |||||||| | Sbjct: 323 accatcttgtagaccatgggaacgaggagacttgcttcggcgactggccacattcaagtc 382 Query: 281 ttcaacttgggatgctaagccgaaggctgctagttcattggcttgttctcanagaggctg 340 |||||| |||| | ||||||| ||||||||||||||| |||||||| ||| |||||||| Sbjct: 383 ttcaacatgggcttctaagccaaaggctgctagttcactggcttgtgctcgaagaggctg 442 Query: 341 ggtaaatgttgatatggacaaaattgaatgtgaatcatgtggtgcgcatcttatatt 397 ||| || |||| ||||||||||||| ||| || |||||||| || ||||||||||| Sbjct: 443 ggtgaacattgaaatggacaaaattgcatgcgagtcatgtggagcacatcttatatt 499
>dbj|AK073749.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033070M17, full insert sequence Length = 3250 Score = 163 bits (82), Expect = 5e-37 Identities = 153/177 (86%) Strand = Plus / Plus Query: 221 accatcttgtagaccatgggagcgtggagacttacttcgtcgactggcaacattcaaacc 280 ||||||||||||||||||||| || |||||||| ||||| |||||||| |||||||| | Sbjct: 323 accatcttgtagaccatgggaacgaggagacttgcttcggcgactggccacattcaagtc 382 Query: 281 ttcaacttgggatgctaagccgaaggctgctagttcattggcttgttctcanagaggctg 340 |||||| |||| | ||||||| ||||||||||||||| |||||||| ||| |||||||| Sbjct: 383 ttcaacatgggcttctaagccaaaggctgctagttcactggcttgtgctcgaagaggctg 442 Query: 341 ggtaaatgttgatatggacaaaattgaatgtgaatcatgtggtgcgcatcttatatt 397 ||| || |||| ||||||||||||| ||| || |||||||| || ||||||||||| Sbjct: 443 ggtgaacattgaaatggacaaaattgcatgcgagtcatgtggagcacatcttatatt 499
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 85.7 bits (43), Expect = 1e-13 Identities = 81/94 (86%) Strand = Plus / Minus Query: 304 aggctgctagttcattggcttgttctcanagaggctgggtaaatgttgatatggacaaaa 363 |||||||||||||| |||||||| ||| ||||||||||| || |||| |||||||||| Sbjct: 2670669 aggctgctagttcactggcttgtgctcgaagaggctgggtgaacattgaaatggacaaaa 2670610 Query: 364 ttgaatgtgaatcatgtggtgcgcatcttatatt 397 ||| ||| || |||||||| || ||||||||||| Sbjct: 2670609 ttgcatgcgagtcatgtggagcacatcttatatt 2670576 Score = 83.8 bits (42), Expect = 4e-13 Identities = 75/86 (87%) Strand = Plus / Minus Query: 221 accatcttgtagaccatgggagcgtggagacttacttcgtcgactggcaacattcaaacc 280 ||||||||||||||||||||| || |||||||| ||||| |||||||| |||||||| | Sbjct: 2671434 accatcttgtagaccatgggaacgaggagacttgcttcggcgactggccacattcaagtc 2671375 Query: 281 ttcaacttgggatgctaagccgaagg 306 |||||| |||| | ||||||| |||| Sbjct: 2671374 ttcaacatgggcttctaagccaaagg 2671349
>dbj|AP003703.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OJ1027_G06 Length = 121885 Score = 85.7 bits (43), Expect = 1e-13 Identities = 81/94 (86%) Strand = Plus / Minus Query: 304 aggctgctagttcattggcttgttctcanagaggctgggtaaatgttgatatggacaaaa 363 |||||||||||||| |||||||| ||| ||||||||||| || |||| |||||||||| Sbjct: 96387 aggctgctagttcactggcttgtgctcgaagaggctgggtgaacattgaaatggacaaaa 96328 Query: 364 ttgaatgtgaatcatgtggtgcgcatcttatatt 397 ||| ||| || |||||||| || ||||||||||| Sbjct: 96327 ttgcatgcgagtcatgtggagcacatcttatatt 96294 Score = 83.8 bits (42), Expect = 4e-13 Identities = 75/86 (87%) Strand = Plus / Minus Query: 221 accatcttgtagaccatgggagcgtggagacttacttcgtcgactggcaacattcaaacc 280 ||||||||||||||||||||| || |||||||| ||||| |||||||| |||||||| | Sbjct: 97152 accatcttgtagaccatgggaacgaggagacttgcttcggcgactggccacattcaagtc 97093 Query: 281 ttcaacttgggatgctaagccgaagg 306 |||||| |||| | ||||||| |||| Sbjct: 97092 ttcaacatgggcttctaagccaaagg 97067
>gb|AC015688.11| Homo sapiens chromosome 17, clone RP11-19P22, complete sequence Length = 152351 Score = 44.1 bits (22), Expect = 0.35 Identities = 28/30 (93%) Strand = Plus / Plus Query: 173 tgggcctgctcatagctttgatgctgctgg 202 ||||||||||||| |||||| ||||||||| Sbjct: 77109 tgggcctgctcatggctttgttgctgctgg 77138
>emb|AL022327.17|HS355C18 Human DNA sequence from clone RP3-355C18 on chromosome 22q13.3 Contains the KIAA0027 gene, ESTs, STSs, GSSs and seven putative CpG islands, complete sequence Length = 101270 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 14 accccaggagagggaggagcg 34 ||||||||||||||||||||| Sbjct: 59034 accccaggagagggaggagcg 59054
>gb|AC069549.5| Homo sapiens chromosome 10 clone RP11-575A19, complete sequence Length = 170554 Score = 42.1 bits (21), Expect = 1.4 Identities = 21/21 (100%) Strand = Plus / Plus Query: 110 ttggctgggtaacagacaggc 130 ||||||||||||||||||||| Sbjct: 156191 ttggctgggtaacagacaggc 156211
>emb|CR548612.1| Paramecium tetraurelia macronuclear largest chromosome, complete sequence Length = 984602 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 83 tatgcaaattaatatagtaa 102 |||||||||||||||||||| Sbjct: 924474 tatgcaaattaatatagtaa 924493
>gb|CP000240.1| Synechococcus sp. JA-2-3B'a(2-13), complete genome Length = 3046682 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 43 ccaccccggtggccagttctgctg 66 |||||| ||||||||||||||||| Sbjct: 2792491 ccacccaggtggccagttctgctg 2792468
>gb|AC087380.3| Homo sapiens chromosome 11, clone RP11-454O22, complete sequence Length = 200723 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 aacattcaaaccttcaactt 288 |||||||||||||||||||| Sbjct: 15992 aacattcaaaccttcaactt 15973
>gb|AF391800.1|AF391800 Homo sapiens aortic aneurysm antigenic protein clone 4 mRNA, partial cds Length = 198 Score = 40.1 bits (20), Expect = 5.4 Identities = 23/24 (95%) Strand = Plus / Minus Query: 114 ctgggtaacagacaggcttccagg 137 |||| ||||||||||||||||||| Sbjct: 69 ctggttaacagacaggcttccagg 46
>gb|AC149207.3| Medicago truncatula chromosome 2 BAC clone mte1-60l24, complete sequence Length = 107210 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 343 taaatgttgatatggacaaa 362 |||||||||||||||||||| Sbjct: 60015 taaatgttgatatggacaaa 60034
>gb|AF137396.2|AF137396 Homo sapiens ubiquilin 3, HOR 5'Beta14, HOR5'Beta13, HOR5'Beta12, and HOR5'Beta11 genes, complete cds; HOR 5'Beta10 and HOR5'Beta9 pseudogenes, complete sequence; HOR5'Beta8 and HOR5'Beta7 genes, complete cds; CHR11ORF1 and amphiphysin pseudogenes, complete sequence; HOR5'Beta6 and HOR5'Beta5 genes, complete cds; HOR5'Beta4 pseudogene, complete sequence; HOR 5'Beta3 genes, complete cds; HOR5'Beta2 pseudogene, complete sequence; and HOR 5'Beta1 gene, complete cds Length = 219955 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 269 aacattcaaaccttcaactt 288 |||||||||||||||||||| Sbjct: 142569 aacattcaaaccttcaactt 142588
>gb|AC007131.4| Homo sapiens BAC clone RP11-179A20 from 2, complete sequence Length = 160087 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 caaattaatatagtaagcat 106 |||||||||||||||||||| Sbjct: 9470 caaattaatatagtaagcat 9451
>gb|AC104389.8| Homo sapiens chromosome 11, clone CTD-2643I7, complete sequence Length = 207343 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Minus Query: 269 aacattcaaaccttcaactt 288 |||||||||||||||||||| Sbjct: 172596 aacattcaaaccttcaactt 172577
>emb|AM055943.1| Toxoplasma gondii, strain RH, genomic DNA chromosome Ib Length = 2013089 Score = 40.1 bits (20), Expect = 5.4 Identities = 20/20 (100%) Strand = Plus / Plus Query: 18 caggagagggaggagcgaga 37 |||||||||||||||||||| Sbjct: 1922609 caggagagggaggagcgaga 1922628 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,568,195 Number of Sequences: 3902068 Number of extensions: 3568195 Number of successful extensions: 68358 Number of sequences better than 10.0: 20 Number of HSP's better than 10.0 without gapping: 20 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68221 Number of HSP's gapped (non-prelim): 133 length of query: 405 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 383 effective length of database: 17,147,199,772 effective search space: 6567377512676 effective search space used: 6567377512676 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
