Clone Information

BLAST Search Result

Clone Name	bastl42e12
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	RXRB_CANFA (Q5TJF7) Retinoic acid receptor RXR-beta (Retinoid X ...	33	0.22
2	YLPM1_MOUSE (Q9R0I7) YLP motif-containing protein 1 (Nuclear pro...	33	0.22
3	PEXLP_TOBAC (Q03211) Pistil-specific extensin-like protein precu...	33	0.38
4	DYN1_CAEEL (P39055) Dynamin (EC 3.6.5.5)	33	0.38
5	YDC9_SCHPO (Q10172) Hypothetical protein C25G10.09c in chromosome I	33	0.38
6	YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5	32	0.65
7	MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)	32	0.85
8	RXRB_HUMAN (P28702) Retinoic acid receptor RXR-beta (Retinoid X ...	31	1.1
9	FZD8_HUMAN (Q9H461) Frizzled 8 precursor (Frizzled-8) (Fz-8) (hFz8)	31	1.1
10	BRSK1_HUMAN (Q8TDC3) BR serine/threonine-protein kinase 1 (EC 2....	31	1.5
11	IF2_PROMM (Q7V5M4) Translation initiation factor IF-2	31	1.5
12	PAN1_YEAST (P32521) Protein PAN1	27	1.5
13	NFIA_CHICK (P17923) Nuclear factor 1 A-type (Nuclear factor 1/A)...	30	1.9
14	KLF12_MOUSE (O35738) Krueppel-like factor 12 (Transcriptional re...	30	1.9
15	NFIA_HUMAN (Q12857) Nuclear factor 1 A-type (Nuclear factor 1/A)...	30	1.9
16	IF2_MYCTU (P65131) Translation initiation factor IF-2	30	2.5
17	IF2_MYCBO (P65132) Translation initiation factor IF-2	30	2.5
18	NFIA_RAT (P09414) Nuclear factor 1 A-type (Nuclear factor 1/A) (...	30	2.5
19	NFIA_MOUSE (Q02780) Nuclear factor 1 A-type (Nuclear factor 1/A)...	30	2.5
20	SYN1_HUMAN (P17600) Synapsin-1 (Synapsin I) (Brain protein 4.1)	30	2.5
21	NO20_MEDTR (P93329) Early nodulin 20 precursor (N-20)	30	2.5
22	PRA_MYCLE (P41484) Proline-rich antigen (36 kDa antigen)	30	3.2
23	SENP3_HUMAN (Q9H4L4) Sentrin-specific protease 3 (EC 3.4.22.-) (...	30	3.2
24	SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich...	30	3.2
25	SYN1_BOVIN (P17599) Synapsin-1 (Synapsin I)	29	4.2
26	MYCN_CHICK (P18444) N-myc proto-oncogene protein	29	4.2
27	LAS17_YEAST (Q12446) Proline-rich protein LAS17	29	4.2
28	HXA3_HUMAN (O43365) Homeobox protein Hox-A3 (Hox-1E)	29	4.2
29	PRP3_RAT (P04474) Acidic proline-rich protein PRP33 precursor (P...	29	4.2
30	IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2	29	5.5
31	MDC1_MACMU (Q5TM68) Mediator of DNA damage checkpoint protein 1	29	5.5
32	ZN219_HUMAN (Q9P2Y4) Zinc finger protein 219	29	5.5
33	SECD_MYCLE (P38387) Protein-export membrane protein secD	29	5.5
34	STON2_MOUSE (Q8BZ60) Stonin-2 (Stoned B)	29	5.5
35	WNK1_HUMAN (Q9H4A3) Serine/threonine-protein kinase WNK1 (EC 2.7...	29	5.5
36	PDE3A_RAT (Q62865) cGMP-inhibited 3',5'-cyclic phosphodiesterase...	29	5.5
37	BAT3_RAT (Q6MG49) Large proline-rich protein BAT3 (HLA-B-associa...	29	5.5
38	SYN1_RAT (P09951) Synapsin-1 (Synapsin I)	29	5.5
39	PRA_MYCTU (O53426) Proline-rich antigen homolog	26	5.9
40	MDC1_HUMAN (Q14676) Mediator of DNA damage checkpoint protein 1 ...	28	7.2
41	SEPA_EMENI (P78621) Cytokinesis protein sepA (FH1/2 protein) (Fo...	28	7.2
42	WNK1_RAT (Q9JIH7) Serine/threonine-protein kinase WNK1 (EC 2.7.1...	28	7.2
43	M3K12_RAT (Q63796) Mitogen-activated protein kinase kinase kinas...	28	7.2
44	DIA_DROME (P48608) Protein diaphanous	28	7.2
45	IF2_PROMT (Q46J13) Translation initiation factor IF-2	28	7.2
46	EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline...	28	7.2
47	CAP1_DICDI (P19198) cAMP-binding protein CABP1A/CABP1B (CABP1 pr...	28	7.2
48	WNK1_MOUSE (P83741) Serine/threonine-protein kinase WNK1 (EC 2.7...	28	7.2
49	SAMD6_MOUSE (Q6GQX6) Sterile alpha motif domain-containing prote...	28	7.2
50	DIAP1_MOUSE (O08808) Protein diaphanous homolog 1 (Diaphanous-re...	28	7.2
51	BCAR1_MOUSE (Q61140) Breast cancer anti-estrogen resistance prot...	28	9.4
52	BCAR1_HUMAN (P56945) Breast cancer anti-estrogen resistance prot...	28	9.4
53	FMNL_HUMAN (O95466) Formin-like 1 protein (Formin-like protein) ...	28	9.4
54	SYN1_CANFA (O62732) Synapsin-1 (Synapsin I) (Fragment)	28	9.4
55	PKHA4_HUMAN (Q9H4M7) Pleckstrin homology domain-containing famil...	28	9.4
56	CF150_HUMAN (Q8N884) Protein C6orf150	28	9.4
57	BCAR1_RAT (Q63767) Breast cancer anti-estrogen resistance protei...	28	9.4
58	WASIP_HUMAN (O43516) Wiskott-Aldrich syndrome protein-interactin...	28	9.4
59	TEGU_EHV1B (P28955) Large tegument protein	28	9.4
60	JERKY_HUMAN (O75564) Jerky protein homolog	28	9.4
61	WASP_HUMAN (P42768) Wiskott-Aldrich syndrome protein (WASp)	28	9.4
62	TAF4_HUMAN (O00268) Transcription initiation factor TFIID subuni...	28	9.4

>RXRB_CANFA (Q5TJF7) Retinoic acid receptor RXR-beta (Retinoid X receptor beta)|
          Length = 533

 Score = 33.5 bits (75), Expect = 0.22
 Identities = 20/47 (42%), Positives = 25/47 (53%)
 Frame = +3

Query: 180 SPDVRPSSPLPATNSSPPQSXXXXXXXXXXXPTSSPSLGGFETPPPP 320
           SPD   SSP P +  +PP S           P+S+P+LGG   PPPP
Sbjct: 82  SPD--SSSPNPLSQGAPPPSPPGLPLP----PSSAPTLGGSGAPPPP 122

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>YLPM1_MOUSE (Q9R0I7) YLP motif-containing protein 1 (Nuclear protein ZAP3)|
          Length = 1386

 Score = 33.5 bits (75), Expect = 0.22
 Identities = 23/69 (33%), Positives = 29/69 (42%), Gaps = 5/69 (7%)
 Frame = +3

Query: 174 PYSPDVRPSSPLPATNS-----SPPQSXXXXXXXXXXXPTSSPSLGGFETPPPPGRRIPS 338
           P SP V P S +P + S      PP S           P + PS    + PPPP   IPS
Sbjct: 148 PESPPVPPGSYMPPSQSYMPPPQPPPSYYPPSSAQPYLPPAQPSPSKPQLPPPPS--IPS 205

Query: 339 GAGAGRQRQ 365
           G     Q++
Sbjct: 206 GNKTAIQQE 214

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>PEXLP_TOBAC (Q03211) Pistil-specific extensin-like protein precursor (PELP)|
          Length = 426

 Score = 32.7 bits (73), Expect = 0.38
 Identities = 20/58 (34%), Positives = 25/58 (43%)
 Frame = +3

Query: 174 PYSPDVRPSSPLPATNSSPPQSXXXXXXXXXXXPTSSPSLGGFETPPPPGRRIPSGAG 347
           P  P   PS P P+ +  PP +           P   P  GGF  PP PG ++P  AG
Sbjct: 68  PSPPPPSPSPPPPSPSPPPPSTI----------PLIPPFTGGF-LPPLPGSKLPDFAG 114

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>DYN1_CAEEL (P39055) Dynamin (EC 3.6.5.5)|
          Length = 830

 Score = 32.7 bits (73), Expect = 0.38
 Identities = 20/59 (33%), Positives = 22/59 (37%)
 Frame = +3

Query: 177 YSPDVRPSSPLPATNSSPPQSXXXXXXXXXXXPTSSPSLGGFETPPPPGRRIPSGAGAG 353
           Y P     SP+P    +PP                 P  GG   PPPPG R P GA  G
Sbjct: 756 YRPHPSGPSPVPRPAPAPPGGRQA----------PMPPRGGPGAPPPPGMRPPPGAPGG 804

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>YDC9_SCHPO (Q10172) Hypothetical protein C25G10.09c in chromosome I|
          Length = 1794

 Score = 32.7 bits (73), Expect = 0.38
 Identities = 17/57 (29%), Positives = 22/57 (38%)
 Frame = +3

Query: 174  PYSPDVRPSSPLPATNSSPPQSXXXXXXXXXXXPTSSPSLGGFETPPPPGRRIPSGA 344
            P  P+V   S +P+    PP S           P S  S     +P PP  + PS A
Sbjct: 1487 PAVPNVPVPSMIPSVAQQPPSSVAPATAPSSTLPPSQSSFAHVPSPAPPAPQHPSAA 1543

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>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5|
          Length = 388

 Score = 32.0 bits (71), Expect = 0.65
 Identities = 19/57 (33%), Positives = 21/57 (36%), Gaps = 1/57 (1%)
 Frame = +3

Query: 174 PYSPDVRPSSP-LPATNSSPPQSXXXXXXXXXXXPTSSPSLGGFETPPPPGRRIPSG 341
           P  P   P  P +P     PP S               P +GG   PPPPG R P G
Sbjct: 301 PPPPGRTPGPPGMPGMPPPPPPSRF-----------GPPGMGGMPPPPPPGMRYPGG 346

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>MUC2_HUMAN (Q02817) Mucin-2 precursor (Intestinal mucin 2)|
          Length = 5179

 Score = 31.6 bits (70), Expect = 0.85
 Identities = 16/52 (30%), Positives = 21/52 (40%)
 Frame = +3

Query: 183  PDVRPSSPLPATNSSPPQSXXXXXXXXXXXPTSSPSLGGFETPPPPGRRIPS 338
            P   PS P+  T + PP +           PT++PS     T  PP    PS
Sbjct: 1450 PTTTPSPPISTTTTPPPTTTPSPPTTTPSPPTTTPSPPTTTTTTPPPTTTPS 1501



 Score = 28.5 bits (62), Expect = 7.2
 Identities = 16/52 (30%), Positives = 21/52 (40%), Gaps = 3/52 (5%)
 Frame = +3

Query: 174  PYSPDVRPSSPLPATNSSPPQSXXXX---XXXXXXXPTSSPSLGGFETPPPP 320
            P  P    ++P P T  SPP +              PT++PS     TP PP
Sbjct: 1641 PSPPPTTTTTPPPTTTPSPPTTTTPSPPITTTTTPPPTTTPSSPITTTPSPP 1692



 Score = 28.5 bits (62), Expect = 7.2
 Identities = 17/57 (29%), Positives = 22/57 (38%), Gaps = 2/57 (3%)
 Frame = +3

Query: 174  PYSPDVRPSSPLPATNSSPPQSXXXX--XXXXXXXPTSSPSLGGFETPPPPGRRIPS 338
            P  P    ++P P T  SPP +             PT++PS     T  PP    PS
Sbjct: 1523 PSPPTTTTTTPPPTTTPSPPTTTPITPPTSTTTLPPTTTPSPPPTTTTTPPPTTTPS 1579



 Score = 28.1 bits (61), Expect = 9.4
 Identities = 18/51 (35%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
 Frame = +3

Query: 174  PYSPDVRPSSPLPATNSSPPQSXXXX--XXXXXXXPTSSPSLGGFETPPPP 320
            P  P    ++PLP T  SPP S             PT++PS     TP PP
Sbjct: 1438 PSPPITTTTTPLPTTTPSPPISTTTTPPPTTTPSPPTTTPS-PPTTTPSPP 1487

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>RXRB_HUMAN (P28702) Retinoic acid receptor RXR-beta (Retinoid X receptor beta)|
          Length = 533

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 20/47 (42%), Positives = 23/47 (48%)
 Frame = +3

Query: 180 SPDVRPSSPLPATNSSPPQSXXXXXXXXXXXPTSSPSLGGFETPPPP 320
           SPD   SSP P     PP S           P+++PSLGG   PPPP
Sbjct: 82  SPD--SSSPNPLPQGVPPPSPPGPPLP----PSTAPSLGGSGAPPPP 122

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>FZD8_HUMAN (Q9H461) Frizzled 8 precursor (Frizzled-8) (Fz-8) (hFz8)|
          Length = 694

 Score = 31.2 bits (69), Expect = 1.1
 Identities = 14/27 (51%), Positives = 18/27 (66%)
 Frame = +3

Query: 276 TSSPSLGGFETPPPPGRRIPSGAGAGR 356
           T++PS      PPPPG + PSG+G GR
Sbjct: 158 TAAPSPPRRLPPPPPGEQPPSGSGHGR 184

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>BRSK1_HUMAN (Q8TDC3) BR serine/threonine-protein kinase 1 (EC 2.7.11.1) (SAD1|
           kinase) (SAD1A)
          Length = 794

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 24/66 (36%), Positives = 28/66 (42%), Gaps = 1/66 (1%)
 Frame = +3

Query: 174 PYSPDVRPSSPLPATNSSPPQSXXXXXXXXXXXPTSSPSLGGFETPPP-PGRRIPSGAGA 350
           P  P  R S+PLP    SP  S           P +SP+     TPPP PG  +  G  A
Sbjct: 508 PPPPSAR-STPLPGPPGSPRSSGGTPLHSPLHTPRASPTGTPGTTPPPSPGGGV--GGAA 564

Query: 351 GRQRQN 368
            R R N
Sbjct: 565 WRSRLN 570

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>IF2_PROMM (Q7V5M4) Translation initiation factor IF-2|
          Length = 1125

 Score = 30.8 bits (68), Expect = 1.5
 Identities = 20/71 (28%), Positives = 28/71 (39%), Gaps = 6/71 (8%)
 Frame = +3

Query: 180 SPDVRPSSPLPATNSSPPQSXXXXXXXXXXXPTSSPSLGGFETPP------PPGRRIPSG 341
           +P  RP++P P   SSPP++           P S P++    T P       P   +P  
Sbjct: 128 APPTRPANPTPTPTSSPPKT----AARPINAPISRPAIPSRPTAPTPRSANKPSSPVPPS 183

Query: 342 AGAGRQRQNWT 374
           AG    R   T
Sbjct: 184 AGGKDPRAGQT 194

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>PAN1_YEAST (P32521) Protein PAN1|
          Length = 1480

 Score = 26.9 bits (58), Expect(2) = 1.5
 Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 3/49 (6%)
 Frame = +3

Query: 183  PDVRPSSPLPATNS---SPPQSXXXXXXXXXXXPTSSPSLGGFETPPPP 320
            P V  + PLPA +     P  S            +S+P+L G   PPPP
Sbjct: 1355 PPVPLAPPLPAVDGFQEPPIPSAPAIATAVQKSGSSTPALAGGVLPPPP 1403



 Score = 22.3 bits (46), Expect(2) = 1.5
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 1    ISSLPAAASRHSPQPRAPPL 60
            I+ +P + ++  P P APPL
Sbjct: 1344 IAPIPPSVTQEPPVPLAPPL 1363

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>NFIA_CHICK (P17923) Nuclear factor 1 A-type (Nuclear factor 1/A) (NF1-A)|
           (NFI-A) (NF-I/A) (CCAAT-box-binding transcription
           factor) (CTF) (TGGCA-binding protein)
          Length = 522

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
 Frame = +3

Query: 174 PYSPDVRPSSPLPATNSSPPQSXXXXXXXXXXXPT-SSPSLGGFETPPPPGRRIPSGAGA 350
           P  P  RP  PLP  ++ PP +           PT S+PS          G R PS    
Sbjct: 454 PPPPMARPV-PLPVPDTKPPTTSTEGGATSPTSPTYSTPSTSPANRFVSVGPRDPSFVNI 512

Query: 351 GRQRQNW 371
            +Q Q+W
Sbjct: 513 PQQTQSW 519

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>KLF12_MOUSE (O35738) Krueppel-like factor 12 (Transcriptional repressor|
           AP-2rep)
          Length = 402

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 19/68 (27%), Positives = 26/68 (38%), Gaps = 7/68 (10%)
 Frame = +3

Query: 180 SPDVRPSSPLPATNSSPPQSXXXXXXXXXXXPTSSPSL-------GGFETPPPPGRRIPS 338
           SP    SSP+  T S+   S           P SSP++           T   PG  + S
Sbjct: 92  SPTAASSSPVSMTGSASSPSSTSTSSSSSSRPASSPTVITSVSRASSSSTVLSPGPLVAS 151

Query: 339 GAGAGRQR 362
            +G G Q+
Sbjct: 152 ASGVGGQQ 159

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>NFIA_HUMAN (Q12857) Nuclear factor 1 A-type (Nuclear factor 1/A) (NF1-A)|
           (NFI-A) (NF-I/A) (CCAAT-box-binding transcription
           factor) (CTF) (TGGCA-binding protein)
          Length = 509

 Score = 30.4 bits (67), Expect = 1.9
 Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
 Frame = +3

Query: 174 PYSPDVRPSSPLPATNSSPPQSXXXXXXXXXXXPT-SSPSLGGFETPPPPGRRIPSGAGA 350
           P  P  RP  PLP  ++ PP +           PT S+PS          G R PS    
Sbjct: 441 PPPPMARPV-PLPVPDTKPPTTSTEGGAASPTSPTYSTPSTSPANRFVSVGPRDPSFVNI 499

Query: 351 GRQRQNW 371
            +Q Q+W
Sbjct: 500 PQQTQSW 506

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>IF2_MYCTU (P65131) Translation initiation factor IF-2|
          Length = 900

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = -2

Query: 355 RPAPAPDGIRRPGGGGVSNPPREGDEVG 272
           RP  A  G+ RPG    S PPR G  VG
Sbjct: 174 RPGTARPGVPRPGASPGSMPPRPGGAVG 201

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>IF2_MYCBO (P65132) Translation initiation factor IF-2|
          Length = 900

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 14/28 (50%), Positives = 15/28 (53%)
 Frame = -2

Query: 355 RPAPAPDGIRRPGGGGVSNPPREGDEVG 272
           RP  A  G+ RPG    S PPR G  VG
Sbjct: 174 RPGTARPGVPRPGASPGSMPPRPGGAVG 201

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>NFIA_RAT (P09414) Nuclear factor 1 A-type (Nuclear factor 1/A) (NF1-A)|
           (NFI-A) (NF-I/A) (CCAAT-box-binding transcription
           factor) (CTF) (TGGCA-binding protein)
          Length = 509

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
 Frame = +3

Query: 174 PYSPDVRPSSPLPATNSSPPQSXXXXXXXXXXXPT-SSPSLGGFETPPPPGRRIPSGAGA 350
           P  P  RP  PLP  ++ PP +           PT S+PS          G R PS    
Sbjct: 441 PPPPMARPV-PLPMPDTKPPTTSTEGGAASPTSPTYSTPSTSPANRFVSVGPRDPSFVNI 499

Query: 351 GRQRQNW 371
            +Q Q+W
Sbjct: 500 PQQTQSW 506

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>NFIA_MOUSE (Q02780) Nuclear factor 1 A-type (Nuclear factor 1/A) (NF1-A)|
           (NFI-A) (NF-I/A) (CCAAT-box-binding transcription
           factor) (CTF) (TGGCA-binding protein)
          Length = 532

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 1/67 (1%)
 Frame = +3

Query: 174 PYSPDVRPSSPLPATNSSPPQSXXXXXXXXXXXPT-SSPSLGGFETPPPPGRRIPSGAGA 350
           P  P  RP  PLP  ++ PP +           PT S+PS          G R PS    
Sbjct: 464 PPPPMARPV-PLPMPDTKPPTTSTEGGAASPTSPTYSTPSTSPANRFVSVGPRDPSFVNI 522

Query: 351 GRQRQNW 371
            +Q Q+W
Sbjct: 523 PQQTQSW 529

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>SYN1_HUMAN (P17600) Synapsin-1 (Synapsin I) (Brain protein 4.1)|
          Length = 705

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 16/55 (29%), Positives = 24/55 (43%)
 Frame = +3

Query: 195 PSSPLPATNSSPPQSXXXXXXXXXXXPTSSPSLGGFETPPPPGRRIPSGAGAGRQ 359
           P+SP P   + PPQ+           P +S +  G +    P ++ P  AG  RQ
Sbjct: 549 PASPSPQRQAGPPQATRQTSVSGPAPPKASGAPPGGQQRQGPPQKPPGPAGPTRQ 603

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>NO20_MEDTR (P93329) Early nodulin 20 precursor (N-20)|
          Length = 268

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 20/61 (32%), Positives = 24/61 (39%), Gaps = 1/61 (1%)
 Frame = +3

Query: 174 PYSPDVRPS-SPLPATNSSPPQSXXXXXXXXXXXPTSSPSLGGFETPPPPGRRIPSGAGA 350
           P SP   PS S  P+ + SP  +           P+SSPS       P P      G GA
Sbjct: 192 PASPSPSPSLSKSPSPSESPSLAPSPSDSVASLAPSSSPSDESPSPAPSPSSSGSKGGGA 251

Query: 351 G 353
           G
Sbjct: 252 G 252

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>PRA_MYCLE (P41484) Proline-rich antigen (36 kDa antigen)|
          Length = 249

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 1/55 (1%)
 Frame = +3

Query: 174 PYSPDVRPSSPLPATNSSPPQSXXXXXXXXXXXPTSSPSLGG-FETPPPPGRRIP 335
           P   +  P+ P P ++     S           P ++P +GG +  PPPPG   P
Sbjct: 7   PSGSNPTPAPPPPGSSGGYEPSFAPSELGSAYPPPTAPPVGGSYPPPPPPGGSYP 61

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>SENP3_HUMAN (Q9H4L4) Sentrin-specific protease 3 (EC 3.4.22.-)|
           (Sentrin/SUMO-specific protease SENP3) (SUMO-1-specific
           protease 3)
          Length = 574

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = +3

Query: 279 SSPSLGGFETPPPPGRRIPSGAGAG 353
           SSP   G   PPPP  R+ SG G G
Sbjct: 25  SSPRRDGLRWPPPPKPRLKSGGGFG 49

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>SFPQ_HUMAN (P23246) Splicing factor, proline- and glutamine-rich|
           (Polypyrimidine tract-binding protein-associated
           splicing factor) (PTB-associated splicing factor) (PSF)
           (DNA-binding p52/p100 complex, 100 kDa subunit) (100-kDa
           DNA-pairing protein) (hPOMp
          Length = 707

 Score = 29.6 bits (65), Expect = 3.2
 Identities = 19/51 (37%), Positives = 23/51 (45%)
 Frame = +3

Query: 201 SPLPATNSSPPQSXXXXXXXXXXXPTSSPSLGGFETPPPPGRRIPSGAGAG 353
           +P PA  S+PP             PT+ P  GG   PPPP   +P G G G
Sbjct: 152 TPPPAVTSAPP-GAPPPTPPSSGVPTTPPQAGG---PPPPPAAVP-GPGPG 197

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>SYN1_BOVIN (P17599) Synapsin-1 (Synapsin I)|
          Length = 706

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = +3

Query: 195 PSSPLPATNSSPPQSXXXXXXXXXXXPTSSPSLGGFETPPPPGRRIPSGAGAGRQ 359
           P+SP P   + PPQ+           P +S    G +    P ++ P  AG  RQ
Sbjct: 549 PASPSPQRQAGPPQATRQTSVSGQAPPKASGVPPGGQQRQGPPQKPPGPAGPTRQ 603

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>MYCN_CHICK (P18444) N-myc proto-oncogene protein|
          Length = 441

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 15/43 (34%), Positives = 18/43 (41%)
 Frame = +3

Query: 219 NSSPPQSXXXXXXXXXXXPTSSPSLGGFETPPPPGRRIPSGAG 347
           +S+PP             P  SPS  G + PPP G  I  G G
Sbjct: 33  DSAPPGEDIWKKFELLPTPPLSPSRAGLQEPPPGGGSIAVGRG 75

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>LAS17_YEAST (Q12446) Proline-rich protein LAS17|
          Length = 633

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 18/65 (27%), Positives = 23/65 (35%)
 Frame = +3

Query: 183 PDVRPSSPLPATNSSPPQSXXXXXXXXXXXPTSSPSLGGFETPPPPGRRIPSGAGAGRQR 362
           P   PS+P+P T    P +            T  P  GG   PPPP +   +    G   
Sbjct: 483 PQSAPSAPIPPTL---PSTTSAAPPPPPAFLTQQPQSGGAPAPPPPPQMPATSTSGGGSF 539

Query: 363 QNWTG 377
              TG
Sbjct: 540 AETTG 544

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>HXA3_HUMAN (O43365) Homeobox protein Hox-A3 (Hox-1E)|
          Length = 443

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 23/62 (37%), Positives = 24/62 (38%), Gaps = 2/62 (3%)
 Frame = +3

Query: 174 PYSPDVRP--SSPLPATNSSPPQSXXXXXXXXXXXPTSSPSLGGFETPPPPGRRIPSGAG 347
           PY P   P  S P   T   PP S           P S PS      PPP  R   +GAG
Sbjct: 288 PYEPQSPPPFSKPPQGTYGLPPASY----------PASLPSCA--PPPPPQKRYTAAGAG 335

Query: 348 AG 353
           AG
Sbjct: 336 AG 337

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>PRP3_RAT (P04474) Acidic proline-rich protein PRP33 precursor (Proline-rich|
           proteoglycan 1)
          Length = 206

 Score = 29.3 bits (64), Expect = 4.2
 Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 1/60 (1%)
 Frame = +3

Query: 204 PLPATNSSPPQSXXXXXXXXXXXPTSSPSLGGFETPPPPGR-RIPSGAGAGRQRQNWTGR 380
           P P  +  PP S           P   P  GG + PP PG  + P   G  +QR    G+
Sbjct: 90  PPPGHHHGPPPSGGPQTSSQPGNPQGPPPQGGPQGPPQPGNPQGPPPQGGPQQRPPQPGK 149

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>IF2_NOCFA (Q5YSC6) Translation initiation factor IF-2|
          Length = 969

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 19/56 (33%), Positives = 21/56 (37%), Gaps = 2/56 (3%)
 Frame = +3

Query: 192 RPSSPLPATNSSPPQSXXXXXXXXXXXPTSSPSLGGFETPP--PPGRRIPSGAGAG 353
           RP  P P+  S PP+            P   PS GG    P   PG   P G G G
Sbjct: 239 RPGGPRPSPGSMPPRP--NPGAMPQRTPRPGPSAGGRPGRPGGAPGAGRPGGGGGG 292

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>MDC1_MACMU (Q5TM68) Mediator of DNA damage checkpoint protein 1|
          Length = 2173

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 12/41 (29%), Positives = 18/41 (43%)
 Frame = +3

Query: 231  PQSXXXXXXXXXXXPTSSPSLGGFETPPPPGRRIPSGAGAG 353
            P+            PTS P +G  + P P    +PSG+ +G
Sbjct: 953  PKGGSQDQKGQASSPTSEPGVGAGDLPGPTSAPVPSGSQSG 993

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>ZN219_HUMAN (Q9P2Y4) Zinc finger protein 219|
          Length = 722

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 16/58 (27%), Positives = 21/58 (36%)
 Frame = +3

Query: 174 PYSPDVRPSSPLPATNSSPPQSXXXXXXXXXXXPTSSPSLGGFETPPPPGRRIPSGAG 347
           P  P  R S+P      SP  +           P+S    G    P  PGR + +G G
Sbjct: 564 PPPPSQRGSAPQSGAKPSPQPATWVEGASSPRPPSSGAGPGSRRKPASPGRTLRNGRG 621

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>SECD_MYCLE (P38387) Protein-export membrane protein secD|
          Length = 571

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 18/53 (33%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
 Frame = +3

Query: 186 DVRPSSP---LPATNSSPPQSXXXXXXXXXXXPTSSPSLGGFETPPPPGRRIP 335
           D +P SP   LP     PP             PTSSPS     +P P G  +P
Sbjct: 132 DPKPGSPAGTLPNFAPMPPDHPGAQPRPYLQDPTSSPSSDPMPSPVPTGAALP 184

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>STON2_MOUSE (Q8BZ60) Stonin-2 (Stoned B)|
          Length = 895

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -3

Query: 225 MSWWPGAGSMGGHPAS 178
           +SWW G+ +M GHPA+
Sbjct: 204 ISWWAGSPAMNGHPAA 219

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>WNK1_HUMAN (Q9H4A3) Serine/threonine-protein kinase WNK1 (EC 2.7.11.1)|
           (Protein kinase with no lysine 1) (Protein kinase,
           lysine-deficient 1) (Kinase deficient protein)
          Length = 2382

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +3

Query: 273 PTSSPSLGGFETPPPPGRRIPSGAGAGRQRQ 365
           P S PSL G +  PPP R   SG+G G  ++
Sbjct: 165 PVSQPSLVGSKEEPPPAR---SGSGGGSAKE 192

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>PDE3A_RAT (Q62865) cGMP-inhibited 3',5'-cyclic phosphodiesterase A (EC|
           3.1.4.17) (Cyclic GMP-inhibited phosphodiesterase A)
           (CGI-PDE A)
          Length = 1141

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 18/54 (33%), Positives = 23/54 (42%)
 Frame = +3

Query: 201 SPLPATNSSPPQSXXXXXXXXXXXPTSSPSLGGFETPPPPGRRIPSGAGAGRQR 362
           SP+P+ +SSPPQ            PTSSP  G      P    + +  G G  R
Sbjct: 520 SPVPSPSSSPPQG----------SPTSSPVSGIASVQFPESPEVTTKRGPGSHR 563

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>BAT3_RAT (Q6MG49) Large proline-rich protein BAT3 (HLA-B-associated|
           transcript 3)
          Length = 1096

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 16/65 (24%), Positives = 23/65 (35%)
 Frame = +3

Query: 126 LCAQAMAXXXXXXXXXPYSPDVRPSSPLPATNSSPPQSXXXXXXXXXXXPTSSPSLGGFE 305
           L AQ            P +   +  +P PA  +  P +            T+ P+ GG  
Sbjct: 548 LVAQGTPGMAPASASAPATAQAQAPAPAPAP-APAPATASASAGTTNTATTAGPAPGGPA 606

Query: 306 TPPPP 320
            PPPP
Sbjct: 607 QPPPP 611

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>SYN1_RAT (P09951) Synapsin-1 (Synapsin I)|
          Length = 704

 Score = 28.9 bits (63), Expect = 5.5
 Identities = 19/56 (33%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = +3

Query: 195 PSSPLPATNSSPPQSXXXXXXXXXXXP-TSSPSLGGFETPPPPGRRIPSGAGAGRQ 359
           P+SP P   + PPQ+           P  S  S GG +   PP ++ P  AG  RQ
Sbjct: 547 PASPSPQRQAGPPQATRQASISGPAPPKVSGASPGGQQRQGPP-QKPPGPAGPIRQ 601

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>PRA_MYCTU (O53426) Proline-rich antigen homolog|
          Length = 240

 Score = 26.2 bits (56), Expect(2) = 5.9
 Identities = 18/52 (34%), Positives = 20/52 (38%)
 Frame = +3

Query: 177 YSPDVRPSSPLPATNSSPPQSXXXXXXXXXXXPTSSPSLGGFETPPPPGRRI 332
           Y+P   PSS        PP             P   PS GG+  PPPPG  I
Sbjct: 37  YAPPPPPSSGSGYPPPPPPPGGGAY-------PPPPPSAGGY-APPPPGPAI 80



 Score = 21.2 bits (43), Expect(2) = 5.9
 Identities = 7/15 (46%), Positives = 8/15 (53%)
 Frame = +1

Query: 13 PAAASRHSPQPRAPP 57
          P  +  H P P APP
Sbjct: 18 PGPSGGHEPPPAAPP 32

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>MDC1_HUMAN (Q14676) Mediator of DNA damage checkpoint protein 1 (Nuclear factor|
            with BRCT domains 1)
          Length = 2089

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 12/46 (26%), Positives = 18/46 (39%)
 Frame = +3

Query: 216  TNSSPPQSXXXXXXXXXXXPTSSPSLGGFETPPPPGRRIPSGAGAG 353
            T    P+            PT  P +G  + P P    +PSG+ +G
Sbjct: 946  TQRGEPEGGSQDQKGQASSPTPEPGVGAGDLPGPTSAPVPSGSQSG 991

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>SEPA_EMENI (P78621) Cytokinesis protein sepA (FH1/2 protein) (Forced expression|
            inhibition of growth A)
          Length = 1790

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 18/57 (31%), Positives = 18/57 (31%)
 Frame = +3

Query: 174  PYSPDVRPSSPLPATNSSPPQSXXXXXXXXXXXPTSSPSLGGFETPPPPGRRIPSGA 344
            P  P   P  P       PP             P   P  GGF  PPPP    P GA
Sbjct: 1051 PPPPPPPPPPPPGGLGGPPPPPPPPPPGGFGGPPPPPPPPGGFGGPPPPPPPPPGGA 1107

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>WNK1_RAT (Q9JIH7) Serine/threonine-protein kinase WNK1 (EC 2.7.11.1)|
           (Protein kinase with no lysine 1) (Protein kinase,
           lysine-deficient 1)
          Length = 2126

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +3

Query: 273 PTSSPSLGGFETPPPPGRRIPSGAGAG 353
           P S PSL G +  PPP R   SG+G+G
Sbjct: 163 PVSQPSLVGSKEEPPPSR---SGSGSG 186

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>M3K12_RAT (Q63796) Mitogen-activated protein kinase kinase kinase 12 (EC|
           2.7.11.25) (Mixed lineage kinase) (Leucine-zipper
           protein kinase) (ZPK) (Dual leucine zipper bearing
           kinase) (DLK) (MAPK-upstream kinase) (MUK)
          Length = 888

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 21/63 (33%), Positives = 24/63 (38%), Gaps = 1/63 (1%)
 Frame = +3

Query: 195 PSSPLPATNSSPPQSXXXXXXXXXXXPTSSPSLGGFETPPPPGRRIPSGAG-AGRQRQNW 371
           P SP P    +PP              TS  S GG +  PPP      G G  G  R+  
Sbjct: 665 PGSPPPPQGDTPPSEGSAPGS------TSPDSPGGAKGEPPPPVGPGEGVGLLGTGREGT 718

Query: 372 TGR 380
           TGR
Sbjct: 719 TGR 721

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>DIA_DROME (P48608) Protein diaphanous|
          Length = 1091

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 16/53 (30%), Positives = 18/53 (33%)
 Frame = +3

Query: 183 PDVRPSSPLPATNSSPPQSXXXXXXXXXXXPTSSPSLGGFETPPPPGRRIPSG 341
           P   P  P+P     PP             P   P +GG   PP PG   P G
Sbjct: 539 PPPPPPPPMPGRAGGPPP------------PPPPPGMGGPPPPPMPGMMRPGG 579

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>IF2_PROMT (Q46J13) Translation initiation factor IF-2|
          Length = 1183

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
 Frame = +3

Query: 174 PYSPDVRPSSPLPATNSSPPQSXXXXXXXXXXXPTSSPSLGGFETPPPPGRRIPSGAGAG 353
           P++ +VR    +P+   +P              P S+  +GG   P  P R+ P+  G  
Sbjct: 297 PHTNEVRNKPVMPSRPGAPKPPTAANRQGLSNRPGSNNRIGGTGRPGSPNRQGPNRGGVA 356

Query: 354 R---QRQNWTG 377
               Q QN  G
Sbjct: 357 NRTTQGQNRPG 367

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>EXTN_TOBAC (P13983) Extensin precursor (Cell wall hydroxyproline-rich|
           glycoprotein)
          Length = 620

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 17/48 (35%), Positives = 19/48 (39%)
 Frame = +3

Query: 177 YSPDVRPSSPLPATNSSPPQSXXXXXXXXXXXPTSSPSLGGFETPPPP 320
           YSP     SP P T + PP             PT SP    +  PPPP
Sbjct: 409 YSPPPPTYSPPPPTYAQPPP----------LPPTYSPPPPAYSPPPPP 446

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>CAP1_DICDI (P19198) cAMP-binding protein CABP1A/CABP1B (CABP1 protein)|
          Length = 333

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 16/45 (35%), Positives = 20/45 (44%), Gaps = 1/45 (2%)
 Frame = +3

Query: 192 RPSSPLPATNSSPPQSXXXXXXXXXXXPTSSPSL-GGFETPPPPG 323
           +PS+        PPQ            PT +P   GG+ TPPPPG
Sbjct: 40  QPSNTTQTPGGYPPQQQQRP-------PTGAPQQPGGYPTPPPPG 77

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>WNK1_MOUSE (P83741) Serine/threonine-protein kinase WNK1 (EC 2.7.11.1)|
           (Protein kinase with no lysine 1) (Protein kinase,
           lysine-deficient 1)
          Length = 2377

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +3

Query: 273 PTSSPSLGGFETPPPPGRRIPSGAGAG 353
           P S PSL G +  PPP R   SG+G+G
Sbjct: 163 PVSQPSLVGSKEEPPPSR---SGSGSG 186

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>SAMD6_MOUSE (Q6GQX6) Sterile alpha motif domain-containing protein 6|
          Length = 883

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 22/59 (37%), Positives = 27/59 (45%), Gaps = 8/59 (13%)
 Frame = +3

Query: 198 SSPL-PATNSSPPQSXXXXXXXXXXXPTSSPSLGGFETPPP-------PGRRIPSGAGA 350
           SSP+ PAT+SSPP+            P S PS G   +  P       P +R PSG  A
Sbjct: 679 SSPVGPATSSSPPE-----------LPASLPSSGSGSSSGPSSSKKLDPSKRPPSGTSA 726

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>DIAP1_MOUSE (O08808) Protein diaphanous homolog 1 (Diaphanous-related formin-1)|
           (DRF1) (mDIA1) (p140mDIA)
          Length = 1255

 Score = 28.5 bits (62), Expect = 7.2
 Identities = 19/58 (32%), Positives = 21/58 (36%)
 Frame = +3

Query: 174 PYSPDVRPSSPLPATNSSPPQSXXXXXXXXXXXPTSSPSLGGFETPPPPGRRIPSGAG 347
           P S  + P  PLP   S PP             P   P  G    PPPP   +P G G
Sbjct: 630 PGSAAIPPPPPLPGVASIPPPP---PLPGATAIPPPPPLPGATAIPPPP--PLPGGTG 682

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>BCAR1_MOUSE (Q61140) Breast cancer anti-estrogen resistance protein 1|
           (CRK-associated substrate) (p130cas)
          Length = 874

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 6/28 (21%)
 Frame = -2

Query: 352 PAPAPD------GIRRPGGGGVSNPPRE 287
           P PAPD      G+RRPG G + + PRE
Sbjct: 369 PPPAPDLYDVPPGLRRPGPGTLYDVPRE 396

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>BCAR1_HUMAN (P56945) Breast cancer anti-estrogen resistance protein 1|
           (CRK-associated substrate) (p130cas)
          Length = 870

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 6/28 (21%)
 Frame = -2

Query: 352 PAPAPD------GIRRPGGGGVSNPPRE 287
           P PAPD      G+RRPG G + + PRE
Sbjct: 365 PPPAPDLYDVPPGLRRPGPGTLYDVPRE 392

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>FMNL_HUMAN (O95466) Formin-like 1 protein (Formin-like protein) (Leukocyte|
           formin) (CLL-associated antigen KW-13)
          Length = 1100

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 18/56 (32%), Positives = 20/56 (35%)
 Frame = +3

Query: 174 PYSPDVRPSSPLPATNSSPPQSXXXXXXXXXXXPTSSPSLGGFETPPPPGRRIPSG 341
           P SP+  P+ PLP     PP             P   P   G   PPPP    P G
Sbjct: 569 PGSPEPPPAPPLPGDLPPPPPP-----------PPPPPGTDGPVPPPPPPPPPPPG 613

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>SYN1_CANFA (O62732) Synapsin-1 (Synapsin I) (Fragment)|
          Length = 415

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 15/55 (27%), Positives = 23/55 (41%)
 Frame = +3

Query: 195 PSSPLPATNSSPPQSXXXXXXXXXXXPTSSPSLGGFETPPPPGRRIPSGAGAGRQ 359
           P+SP P   + PPQ+           P +S +    +    P ++ P  AG  RQ
Sbjct: 277 PASPSPQRQAGPPQATRQTSVSGQAPPKASGAPPSGQQRQGPPQKPPGPAGPTRQ 331

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>PKHA4_HUMAN (Q9H4M7) Pleckstrin homology domain-containing family A member 4|
           (Phosphoinositol 3-phosphate-binding protein 1) (PEPP-1)
          Length = 779

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 3/68 (4%)
 Frame = +3

Query: 180 SPDVRPSSPLPATNSSPPQSXXXXXXXXXXXPTSSPSLGGFETPPPPGRRIPSGAGAG-- 353
           +P  RP +PL   +  PP                 P       PP P R  PS AG G  
Sbjct: 264 APPARPHTPLSRIDVRPPLDW-------------GPQRQTLSRPPTPRRGPPSEAGGGKP 310

Query: 354 -RQRQNWT 374
            R  Q+W+
Sbjct: 311 PRSPQHWS 318

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>CF150_HUMAN (Q8N884) Protein C6orf150|
          Length = 522

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 2/63 (3%)
 Frame = +3

Query: 180 SPDVRPSSPLPATNSSPPQSXXXXXXXXXXXPTSSPSLGGFETPPPPGRRIP--SGAGAG 353
           +PD +   P+ AT +   ++            TS+P   G E   PP  R P  S AG+ 
Sbjct: 65  APDTQERPPVRATGARAKKAPQRAQDTQPSDATSAPGAEGLE---PPAAREPALSRAGSC 121

Query: 354 RQR 362
           RQR
Sbjct: 122 RQR 124

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>BCAR1_RAT (Q63767) Breast cancer anti-estrogen resistance protein 1|
           (CRK-associated substrate) (p130cas)
          Length = 968

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 14/28 (50%), Positives = 17/28 (60%), Gaps = 6/28 (21%)
 Frame = -2

Query: 352 PAPAPD------GIRRPGGGGVSNPPRE 287
           P PAPD      G+RRPG G + + PRE
Sbjct: 463 PPPAPDLYDVPPGLRRPGPGTLYDVPRE 490

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>WASIP_HUMAN (O43516) Wiskott-Aldrich syndrome protein-interacting protein|
           (WASP-interacting protein) (PRPL-2 protein)
          Length = 503

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 22/72 (30%), Positives = 25/72 (34%), Gaps = 2/72 (2%)
 Frame = +3

Query: 174 PYSPDVRPSSPLPATNSSPPQSXXXXXXXXXX--XPTSSPSLGGFETPPPPGRRIPSGAG 347
           P S +   S  LPAT   P +S             P   PS G    PPPP   I +G  
Sbjct: 384 PVSRNGSTSRALPATPQLPSRSGVDSPRSGPRPPLPPDRPSAGA-PPPPPPSTSIRNGFQ 442

Query: 348 AGRQRQNWTGRF 383
                  W  RF
Sbjct: 443 DSPCEDEWESRF 454

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>TEGU_EHV1B (P28955) Large tegument protein|
          Length = 3421

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 18/60 (30%), Positives = 23/60 (38%), Gaps = 6/60 (10%)
 Frame = +3

Query: 174  PYSPDVRPSSPLPATNSSP------PQSXXXXXXXXXXXPTSSPSLGGFETPPPPGRRIP 335
            P +PD  P +  P  ++ P      P             P   PSLG F+   PPG  IP
Sbjct: 2712 PVTPDGTPGAKPPPKDAPPVDDTKQPVRKSLPSQVRGGRPYIRPSLGPFKFTGPPGYTIP 2771

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>JERKY_HUMAN (O75564) Jerky protein homolog|
          Length = 520

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 10/17 (58%), Positives = 11/17 (64%)
 Frame = -2

Query: 367 FWRCRPAPAPDGIRRPG 317
           FWRC P P P+G   PG
Sbjct: 144 FWRCLPNPTPEGGAVPG 160

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>WASP_HUMAN (P42768) Wiskott-Aldrich syndrome protein (WASp)|
          Length = 501

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 14/46 (30%), Positives = 14/46 (30%)
 Frame = +3

Query: 183 PDVRPSSPLPATNSSPPQSXXXXXXXXXXXPTSSPSLGGFETPPPP 320
           P   P  P P     PP             P   P  GG   PPPP
Sbjct: 351 PPPTPRGPPPPGRGGPPPPPPPATGRSGPLPPPPPGAGGPPMPPPP 396

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>TAF4_HUMAN (O00268) Transcription initiation factor TFIID subunit 4|
           (Transcription initiation factor TFIID 135 kDa subunit)
           (TAF(II)135) (TAFII-135) (TAFII135) (TAFII-130)
           (TAFII130)
          Length = 1085

 Score = 28.1 bits (61), Expect = 9.4
 Identities = 21/78 (26%), Positives = 26/78 (33%)
 Frame = +3

Query: 123 SLCAQAMAXXXXXXXXXPYSPDVRPSSPLPATNSSPPQSXXXXXXXXXXXPTSSPSLGGF 302
           SL +Q  A         P +P+VR ++     N     S           P      G  
Sbjct: 28  SLESQLAASAAHHHHLAPRTPEVRAAAAGALGNHVVSGSPAGAAGAGPAAPAEGAP-GAA 86

Query: 303 ETPPPPGRRIPSGAGAGR 356
             PPP GR  P G G  R
Sbjct: 87  PEPPPAGRARPGGGGPQR 104


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,814,950
Number of Sequences: 219361
Number of extensions: 806087
Number of successful extensions: 4610
Number of sequences better than 10.0: 62
Number of HSP's better than 10.0 without gapping: 3763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4529
length of database: 80,573,946
effective HSP length: 101
effective length of database: 58,418,485
effective search space used: 2453576370
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result