Clone Name | bastl42e09 |
---|---|
Clone Library Name | barley_pub |
>BT1_MAIZE (P29518) Protein brittle-1, chloroplast precursor| Length = 436 Score = 35.8 bits (81), Expect = 0.026 Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 5/44 (11%) Frame = -2 Query: 352 GAVPSRRRG-----VEKPARRHQEATAAPRGEPGHGRSEPRGPA 236 G+ P RRG E RRH+EA AA R EP G+ + R PA Sbjct: 91 GSRPPGRRGRGSEEEEAEGRRHEEAAAAGRSEPEEGQGQDRQPA 134
>ZNHI4_MOUSE (Q99PT3) Zinc finger HIT domain-containing protein 4| (PAP-1-associated protein 1) (PAPA-1) (High mobility group AT-hook 1-like 4) Length = 345 Score = 29.3 bits (64), Expect = 2.5 Identities = 18/49 (36%), Positives = 20/49 (40%) Frame = -1 Query: 350 RCTEPAAWSGKAGEAAPGGHRRPPRGAWPWEERTTRAC*PXXXXXRMFP 204 R T+ AA SG+ G A G RR R A P R C FP Sbjct: 228 RLTKTAAPSGRGGRGAARGERRGGRAAAPAPAPMVRYCSGAQGSTLSFP 276
>PRIO_MESAU (P04273) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) Length = 254 Score = 29.3 bits (64), Expect = 2.5 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 4/31 (12%) Frame = -1 Query: 341 EPAAW----SGKAGEAAPGGHRRPPRGAWPW 261 +P W S G+ +PGG+R PP+G W Sbjct: 27 KPGGWNTGGSRYPGQGSPGGNRYPPQGGGTW 57
>PRIO_CRIMI (Q60468) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) Length = 254 Score = 29.3 bits (64), Expect = 2.5 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 4/31 (12%) Frame = -1 Query: 341 EPAAW----SGKAGEAAPGGHRRPPRGAWPW 261 +P W S G+ +PGG+R PP+G W Sbjct: 27 KPGGWNTGGSRYPGQGSPGGNRYPPQGGGTW 57
>PRIO_CRIGR (Q60506) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) Length = 254 Score = 29.3 bits (64), Expect = 2.5 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 4/31 (12%) Frame = -1 Query: 341 EPAAW----SGKAGEAAPGGHRRPPRGAWPW 261 +P W S G+ +PGG+R PP+G W Sbjct: 27 KPGGWNTGGSRYPGQGSPGGNRYPPQGGGTW 57
>PRIO_CALMO (P40248) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) (Fragment) Length = 241 Score = 29.3 bits (64), Expect = 2.5 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 4/31 (12%) Frame = -1 Query: 341 EPAAW----SGKAGEAAPGGHRRPPRGAWPW 261 +P W S G+ +PGG+R PP+G W Sbjct: 20 KPGGWNTGGSRYPGQGSPGGNRYPPQGGGSW 50
>PRIO_MOSCH (Q68G95) Major prion protein precursor (PrP) (CD230 antigen)| Length = 256 Score = 29.3 bits (64), Expect = 2.5 Identities = 10/18 (55%), Positives = 14/18 (77%) Frame = -1 Query: 314 GEAAPGGHRRPPRGAWPW 261 G+ +PGG+R PP+GA W Sbjct: 43 GQGSPGGNRYPPQGAGGW 60
>TTLL4_HUMAN (Q14679) Tubulin--tyrosine ligase-like protein 4| Length = 1199 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/24 (50%), Positives = 16/24 (66%) Frame = +1 Query: 286 RRWPPGAASPAFPLHAAGSVQRLV 357 RRW P A + FP AGSV+R++ Sbjct: 377 RRWKPPAVNQQFPQEDAGSVRRVL 400
>TERF1_HUMAN (P54274) Telomeric repeat-binding factor 1 (TTAGGG repeat-binding| factor 1) (NIMA-interacting protein 2) (Telomeric protein Pin2/TRF1) Length = 439 Score = 28.9 bits (63), Expect = 3.2 Identities = 14/34 (41%), Positives = 16/34 (47%) Frame = -1 Query: 356 TRRCTEPAAWSGKAGEAAPGGHRRPPRGAWPWEE 255 +RR TE K+ P HR R AW WEE Sbjct: 354 SRRATESRIPVSKSQPVTPEKHRARKRQAWLWEE 387
>PRIO_THEGE (Q95270) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) (Fragment) Length = 238 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 4/31 (12%) Frame = -1 Query: 341 EPAAW----SGKAGEAAPGGHRRPPRGAWPW 261 +P W S G+ +PGG+R PP+G W Sbjct: 20 KPGGWNTGGSRYPGQGSPGGNRYPPQGGGGW 50
>PRIO_MACSY (P67991) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) (Fragment) Length = 238 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 4/31 (12%) Frame = -1 Query: 341 EPAAW----SGKAGEAAPGGHRRPPRGAWPW 261 +P W S G+ +PGG+R PP+G W Sbjct: 20 KPGGWNTGGSRYPGQGSPGGNRYPPQGGGGW 50
>PRIO_CERDI (P67989) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) Length = 245 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 4/31 (12%) Frame = -1 Query: 341 EPAAW----SGKAGEAAPGGHRRPPRGAWPW 261 +P W S G+ +PGG+R PP+G W Sbjct: 27 KPGGWNTGGSRYPGQGSPGGNRYPPQGGGGW 57
>PRIO_CERAT (P67990) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) (Fragment) Length = 238 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 4/31 (12%) Frame = -1 Query: 341 EPAAW----SGKAGEAAPGGHRRPPRGAWPW 261 +P W S G+ +PGG+R PP+G W Sbjct: 20 KPGGWNTGGSRYPGQGSPGGNRYPPQGGGGW 50
>PRIO_CERAE (P67988) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) Length = 245 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 4/31 (12%) Frame = -1 Query: 341 EPAAW----SGKAGEAAPGGHRRPPRGAWPW 261 +P W S G+ +PGG+R PP+G W Sbjct: 27 KPGGWNTGGSRYPGQGSPGGNRYPPQGGGGW 57
>PRIO_MANSP (P40255) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) (Fragment) Length = 241 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 4/31 (12%) Frame = -1 Query: 341 EPAAW----SGKAGEAAPGGHRRPPRGAWPW 261 +P W S G+ +PGG+R PP+G W Sbjct: 20 KPGGWNTGGSRYPGQGSPGGNRYPPQGGGGW 50
>TERF1_CRIGR (O55036) Telomeric repeat-binding factor 1 (TTAGGG repeat-binding| factor 1) (Fragment) Length = 438 Score = 28.9 bits (63), Expect = 3.2 Identities = 14/34 (41%), Positives = 16/34 (47%) Frame = -1 Query: 356 TRRCTEPAAWSGKAGEAAPGGHRRPPRGAWPWEE 255 +RR TE K+ P HR R AW WEE Sbjct: 354 SRRATESRIPVSKSQPVTPEKHRARKRQAWLWEE 387
>PRIO_ERYPA (Q95174) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) (Fragment) Length = 246 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 4/31 (12%) Frame = -1 Query: 341 EPAAW----SGKAGEAAPGGHRRPPRGAWPW 261 +P W S G+ +PGG+R PP+G W Sbjct: 20 KPGGWNTGGSRYPGQGSPGGNRYPPQGGGGW 50
>PRIO_CERTO (Q95176) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) (Fragment) Length = 246 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 4/31 (12%) Frame = -1 Query: 341 EPAAW----SGKAGEAAPGGHRRPPRGAWPW 261 +P W S G+ +PGG+R PP+G W Sbjct: 20 KPGGWNTGGSRYPGQGSPGGNRYPPQGGGGW 50
>PRIO_CERNE (P61762) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) (Fragment) Length = 246 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 4/31 (12%) Frame = -1 Query: 341 EPAAW----SGKAGEAAPGGHRRPPRGAWPW 261 +P W S G+ +PGG+R PP+G W Sbjct: 20 KPGGWNTGGSRYPGQGSPGGNRYPPQGGGGW 50
>PRIO_CERMO (P61761) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) (Fragment) Length = 246 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 4/31 (12%) Frame = -1 Query: 341 EPAAW----SGKAGEAAPGGHRRPPRGAWPW 261 +P W S G+ +PGG+R PP+G W Sbjct: 20 KPGGWNTGGSRYPGQGSPGGNRYPPQGGGGW 50
>PRIO_PREFR (P40257) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) Length = 253 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 4/31 (12%) Frame = -1 Query: 341 EPAAW----SGKAGEAAPGGHRRPPRGAWPW 261 +P W S G+ +PGG+R PP+G W Sbjct: 27 KPGGWNTGGSRYPGQGSPGGNRYPPQGGGGW 57
>PRIO_PONPY (P40256) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) Length = 253 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 4/31 (12%) Frame = -1 Query: 341 EPAAW----SGKAGEAAPGGHRRPPRGAWPW 261 +P W S G+ +PGG+R PP+G W Sbjct: 27 KPGGWNTGGSRYPGQGSPGGNRYPPQGGGGW 57
>PRIO_PAPHA (P67996) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) Length = 253 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 4/31 (12%) Frame = -1 Query: 341 EPAAW----SGKAGEAAPGGHRRPPRGAWPW 261 +P W S G+ +PGG+R PP+G W Sbjct: 27 KPGGWNTGGSRYPGQGSPGGNRYPPQGGGGW 57
>PRIO_PANTR (P61768) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) Length = 253 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 4/31 (12%) Frame = -1 Query: 341 EPAAW----SGKAGEAAPGGHRRPPRGAWPW 261 +P W S G+ +PGG+R PP+G W Sbjct: 27 KPGGWNTGGSRYPGQGSPGGNRYPPQGGGGW 57
>PRIO_MACNE (P67995) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) Length = 253 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 4/31 (12%) Frame = -1 Query: 341 EPAAW----SGKAGEAAPGGHRRPPRGAWPW 261 +P W S G+ +PGG+R PP+G W Sbjct: 27 KPGGWNTGGSRYPGQGSPGGNRYPPQGGGGW 57
>PRIO_MACMU (P67997) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) Length = 253 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 4/31 (12%) Frame = -1 Query: 341 EPAAW----SGKAGEAAPGGHRRPPRGAWPW 261 +P W S G+ +PGG+R PP+G W Sbjct: 27 KPGGWNTGGSRYPGQGSPGGNRYPPQGGGGW 57
>PRIO_MACFU (P67994) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) Length = 253 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 4/31 (12%) Frame = -1 Query: 341 EPAAW----SGKAGEAAPGGHRRPPRGAWPW 261 +P W S G+ +PGG+R PP+G W Sbjct: 27 KPGGWNTGGSRYPGQGSPGGNRYPPQGGGGW 57
>PRIO_MACFA (P67992) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) Length = 253 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 4/31 (12%) Frame = -1 Query: 341 EPAAW----SGKAGEAAPGGHRRPPRGAWPW 261 +P W S G+ +PGG+R PP+G W Sbjct: 27 KPGGWNTGGSRYPGQGSPGGNRYPPQGGGGW 57
>PRIO_MACAR (P67993) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) Length = 253 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 4/31 (12%) Frame = -1 Query: 341 EPAAW----SGKAGEAAPGGHRRPPRGAWPW 261 +P W S G+ +PGG+R PP+G W Sbjct: 27 KPGGWNTGGSRYPGQGSPGGNRYPPQGGGGW 57
>PRIO_HYLSY (P61767) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) Length = 253 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 4/31 (12%) Frame = -1 Query: 341 EPAAW----SGKAGEAAPGGHRRPPRGAWPW 261 +P W S G+ +PGG+R PP+G W Sbjct: 27 KPGGWNTGGSRYPGQGSPGGNRYPPQGGGGW 57
>PRIO_HYLLA (P61766) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) Length = 253 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 4/31 (12%) Frame = -1 Query: 341 EPAAW----SGKAGEAAPGGHRRPPRGAWPW 261 +P W S G+ +PGG+R PP+G W Sbjct: 27 KPGGWNTGGSRYPGQGSPGGNRYPPQGGGGW 57
>PRIO_HUMAN (P04156) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (ASCR) (CD230 antigen) Length = 253 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 4/31 (12%) Frame = -1 Query: 341 EPAAW----SGKAGEAAPGGHRRPPRGAWPW 261 +P W S G+ +PGG+R PP+G W Sbjct: 27 KPGGWNTGGSRYPGQGSPGGNRYPPQGGGGW 57
>PRIO_GORGO (P40252) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) Length = 253 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 4/31 (12%) Frame = -1 Query: 341 EPAAW----SGKAGEAAPGGHRRPPRGAWPW 261 +P W S G+ +PGG+R PP+G W Sbjct: 27 KPGGWNTGGSRYPGQGSPGGNRYPPQGGGGW 57
>PRIO_COLGU (P40251) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) Length = 253 Score = 28.9 bits (63), Expect = 3.2 Identities = 12/31 (38%), Positives = 17/31 (54%), Gaps = 4/31 (12%) Frame = -1 Query: 341 EPAAW----SGKAGEAAPGGHRRPPRGAWPW 261 +P W S G+ +PGG+R PP+G W Sbjct: 27 KPGGWNTGGSRYPGQGSPGGNRYPPQGGGGW 57
>PRIO_SIGHI (Q9Z0T3) Major prion protein precursor (PrP) (CD230 antigen)| Length = 254 Score = 28.1 bits (61), Expect = 5.5 Identities = 12/31 (38%), Positives = 16/31 (51%), Gaps = 4/31 (12%) Frame = -1 Query: 341 EPAAW----SGKAGEAAPGGHRRPPRGAWPW 261 +P W S G+ PGG+R PP+G W Sbjct: 27 KPGGWNTGGSRYPGQGNPGGNRYPPQGGGTW 57
>KITM_MACFA (Q9N0C5) Thymidine kinase 2, mitochondrial precursor (EC 2.7.1.21)| (Mt-TK) Length = 265 Score = 28.1 bits (61), Expect = 5.5 Identities = 16/30 (53%), Positives = 16/30 (53%), Gaps = 1/30 (3%) Frame = -1 Query: 350 RCTEPAAWSGKAGEAAPG-GHRRPPRGAWP 264 RC EP G G A G G RR RGAWP Sbjct: 15 RCFEP----GSPGSPASGPGSRRVQRGAWP 40
>ACSA_RHOCA (O68040) Acetyl-coenzyme A synthetase (EC 6.2.1.1) (Acetate--CoA| ligase) (Acyl-activating enzyme) Length = 656 Score = 28.1 bits (61), Expect = 5.5 Identities = 15/29 (51%), Positives = 18/29 (62%) Frame = +1 Query: 271 APRGGRRWPPGAASPAFPLHAAGSVQRLV 357 APRGGRR P A + A LH + V+ LV Sbjct: 196 APRGGRRTPLKANTDAALLHCSDKVRCLV 224
>LEU2_AZOVI (P96195) 3-isopropylmalate dehydratase large subunit (EC 4.2.1.33)| (Isopropylmalate isomerase) (Alpha-IPM isomerase) (IPMI) Length = 470 Score = 28.1 bits (61), Expect = 5.5 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 4/33 (12%) Frame = +3 Query: 273 SPRGAAVASWCRLAGFSTPRRR----LGTAPRP 359 SPR ++ WCR G+S RRR G++ RP Sbjct: 369 SPRASSRRWWCRAPGWSRSRRRRRGWTGSSSRP 401
>PRIO_BOSTR (Q5UJG7) Major prion protein precursor (PrP) (CD230 antigen)| Length = 264 Score = 28.1 bits (61), Expect = 5.5 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = -1 Query: 314 GEAAPGGHRRPPRGAWPW 261 G+ +PGG+R PP+G W Sbjct: 43 GQGSPGGNRYPPQGGGSW 60
>PRIO_CANFA (O46501) Major prion protein precursor (PrP) (CD230 antigen)| Length = 255 Score = 27.7 bits (60), Expect = 7.2 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = -1 Query: 314 GEAAPGGHRRPPRGAWPW 261 G+ +PGG+R PP+G W Sbjct: 43 GQGSPGGNRYPPQGGGGW 60
>PRIO_CAMDR (P79141) Major prion protein precursor (PrP) (CD230 antigen)| Length = 255 Score = 27.7 bits (60), Expect = 7.2 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = -1 Query: 314 GEAAPGGHRRPPRGAWPW 261 G+ +PGG+R PP+G W Sbjct: 43 GQGSPGGNRYPPQGGGGW 60
>PRIO_PIG (P49927) Major prion protein precursor (PrP) (CD230 antigen)| Length = 257 Score = 27.7 bits (60), Expect = 7.2 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = -1 Query: 314 GEAAPGGHRRPPRGAWPW 261 G+ +PGG+R PP+G W Sbjct: 43 GQGSPGGNRYPPQGGGGW 60
>PRIO_MUSVI (P40244) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) Length = 257 Score = 27.7 bits (60), Expect = 7.2 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = -1 Query: 314 GEAAPGGHRRPPRGAWPW 261 G+ +PGG+R PP+G W Sbjct: 43 GQGSPGGNRYPPQGGGGW 60
>PRIO_MUSPF (P52114) Major prion protein precursor (PrP) (PrP27-30) (PrP33-35C)| (CD230 antigen) Length = 257 Score = 27.7 bits (60), Expect = 7.2 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = -1 Query: 314 GEAAPGGHRRPPRGAWPW 261 G+ +PGG+R PP+G W Sbjct: 43 GQGSPGGNRYPPQGGGGW 60
>NUMB_MOUSE (Q9QZS3) Protein numb homolog (m-Numb) (m-Nb)| Length = 653 Score = 27.7 bits (60), Expect = 7.2 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 4/34 (11%) Frame = -1 Query: 329 WSGKAGEAAPG----GHRRPPRGAWPWEERTTRA 240 W +G A+PG GHRR P A W E +++ Sbjct: 419 WGQSSGAASPGLFQAGHRRTPSEADRWLEEVSKS 452
>ZFP91_HUMAN (Q96JP5) Zinc finger protein 91 homolog (Zfp-91)| Length = 570 Score = 27.7 bits (60), Expect = 7.2 Identities = 14/38 (36%), Positives = 17/38 (44%) Frame = -2 Query: 349 AVPSRRRGVEKPARRHQEATAAPRGEPGHGRSEPRGPA 236 A SRRR E P RR +A P PG + P+ Sbjct: 66 AAVSRRRKAEYPRRRRSSPSARPPDVPGQQPQAAKSPS 103
>NUMB_HUMAN (P49757) Protein numb homolog (h-Numb) (Protein S171)| Length = 651 Score = 27.7 bits (60), Expect = 7.2 Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 4/34 (11%) Frame = -1 Query: 329 WSGKAGEAAPG----GHRRPPRGAWPWEERTTRA 240 W +G A+PG GHRR P A W E +++ Sbjct: 417 WGQSSGAASPGLFQAGHRRTPSEADRWLEEVSKS 450
>PRIO_SHEEP (P23907) Major prion protein precursor (PrP) (CD230 antigen)| Length = 256 Score = 27.7 bits (60), Expect = 7.2 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = -1 Query: 314 GEAAPGGHRRPPRGAWPW 261 G+ +PGG+R PP+G W Sbjct: 43 GQGSPGGNRYPPQGGGGW 60
>PRIO_RUPRU (Q5XVM4) Major prion protein precursor (PrP) (CD230 antigen)| Length = 256 Score = 27.7 bits (60), Expect = 7.2 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = -1 Query: 314 GEAAPGGHRRPPRGAWPW 261 G+ +PGG+R PP+G W Sbjct: 43 GQGSPGGNRYPPQGGGGW 60
>PRIO_OVIMU (Q7JK02) Major prion protein precursor (PrP) (CD230 antigen)| Length = 256 Score = 27.7 bits (60), Expect = 7.2 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = -1 Query: 314 GEAAPGGHRRPPRGAWPW 261 G+ +PGG+R PP+G W Sbjct: 43 GQGSPGGNRYPPQGGGGW 60
>PRIO_OVIMO (Q7JIY2) Major prion protein precursor (PrP) (CD230 antigen)| Length = 256 Score = 27.7 bits (60), Expect = 7.2 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = -1 Query: 314 GEAAPGGHRRPPRGAWPW 261 G+ +PGG+R PP+G W Sbjct: 43 GQGSPGGNRYPPQGGGGW 60
>PRIO_OVICA (Q7JIH3) Major prion protein precursor (PrP) (CD230 antigen)| Length = 256 Score = 27.7 bits (60), Expect = 7.2 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = -1 Query: 314 GEAAPGGHRRPPRGAWPW 261 G+ +PGG+R PP+G W Sbjct: 43 GQGSPGGNRYPPQGGGGW 60
>PRIO_ODOHE (P47852) Major prion protein precursor (PrP) (CD230 antigen)| Length = 256 Score = 27.7 bits (60), Expect = 7.2 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = -1 Query: 314 GEAAPGGHRRPPRGAWPW 261 G+ +PGG+R PP+G W Sbjct: 43 GQGSPGGNRYPPQGGGGW 60
>PRIO_FELCA (O18754) Major prion protein precursor (PrP) (CD230 antigen)| Length = 256 Score = 27.7 bits (60), Expect = 7.2 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = -1 Query: 314 GEAAPGGHRRPPRGAWPW 261 G+ +PGG+R PP+G W Sbjct: 43 GQGSPGGNRYPPQGGGGW 60
>PRIO_CEREN (P67986) Major prion protein precursor (PrP) (CD230 antigen)| Length = 256 Score = 27.7 bits (60), Expect = 7.2 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = -1 Query: 314 GEAAPGGHRRPPRGAWPW 261 G+ +PGG+R PP+G W Sbjct: 43 GQGSPGGNRYPPQGGGGW 60
>PRIO_CEREL (P67987) Major prion protein precursor (PrP) (CD230 antigen)| Length = 256 Score = 27.7 bits (60), Expect = 7.2 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = -1 Query: 314 GEAAPGGHRRPPRGAWPW 261 G+ +PGG+R PP+G W Sbjct: 43 GQGSPGGNRYPPQGGGGW 60
>PRIO_CAPHI (P52113) Major prion protein precursor (PrP) (CD230 antigen)| Length = 256 Score = 27.7 bits (60), Expect = 7.2 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = -1 Query: 314 GEAAPGGHRRPPRGAWPW 261 G+ +PGG+R PP+G W Sbjct: 43 GQGSPGGNRYPPQGGGGW 60
>PRIO_BUDTA (Q95M08) Major prion protein precursor (PrP) (CD230 antigen)| Length = 256 Score = 27.7 bits (60), Expect = 7.2 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = -1 Query: 314 GEAAPGGHRRPPRGAWPW 261 G+ +PGG+R PP+G W Sbjct: 43 GQGSPGGNRYPPQGGGGW 60
>PRIO2_BOVIN (Q01880) Major prion protein 2 precursor (PrP) (Major| scrapie-associated fibril protein 2) Length = 256 Score = 27.7 bits (60), Expect = 7.2 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = -1 Query: 314 GEAAPGGHRRPPRGAWPW 261 G+ +PGG+R PP+G W Sbjct: 43 GQGSPGGNRYPPQGGGGW 60
>PRIO_BOSIN (Q5UJI7) Major prion protein precursor (PrP) (CD230 antigen)| Length = 264 Score = 27.7 bits (60), Expect = 7.2 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = -1 Query: 314 GEAAPGGHRRPPRGAWPW 261 G+ +PGG+R PP+G W Sbjct: 43 GQGSPGGNRYPPQGGGGW 60
>PRIO_BOSGA (Q5UJH0) Major prion protein precursor (PrP) (CD230 antigen)| Length = 264 Score = 27.7 bits (60), Expect = 7.2 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = -1 Query: 314 GEAAPGGHRRPPRGAWPW 261 G+ +PGG+R PP+G W Sbjct: 43 GQGSPGGNRYPPQGGGGW 60
>PRIO_BISBI (Q5UAF1) Major prion protein precursor (PrP) (CD230 antigen)| Length = 264 Score = 27.7 bits (60), Expect = 7.2 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = -1 Query: 314 GEAAPGGHRRPPRGAWPW 261 G+ +PGG+R PP+G W Sbjct: 43 GQGSPGGNRYPPQGGGGW 60
>PRIO_ANTCE (Q5UJG1) Major prion protein precursor (PrP) (CD230 antigen)| Length = 264 Score = 27.7 bits (60), Expect = 7.2 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = -1 Query: 314 GEAAPGGHRRPPRGAWPW 261 G+ +PGG+R PP+G W Sbjct: 43 GQGSPGGNRYPPQGGGGW 60
>PRIO1_BOVIN (P10279) Major prion protein 1 precursor (PrP) (Major| scrapie-associated fibril protein 1) (CD230 antigen) Length = 264 Score = 27.7 bits (60), Expect = 7.2 Identities = 9/18 (50%), Positives = 13/18 (72%) Frame = -1 Query: 314 GEAAPGGHRRPPRGAWPW 261 G+ +PGG+R PP+G W Sbjct: 43 GQGSPGGNRYPPQGGGGW 60
>RM37_MOUSE (Q921S7) 39S ribosomal protein L37, mitochondrial precursor (L37mt)| (MRP-L37) Length = 423 Score = 27.3 bits (59), Expect = 9.4 Identities = 11/25 (44%), Positives = 15/25 (60%) Frame = -1 Query: 317 AGEAAPGGHRRPPRGAWPWEERTTR 243 +G GG+ P RGA+ W R+TR Sbjct: 15 SGRLGLGGYGTPKRGAYEWGVRSTR 39
>MOS_CHICK (P10741) Serine/threonine-protein kinase mos (EC 2.7.11.1) (Oocyte| maturation factor mos) Length = 349 Score = 27.3 bits (59), Expect = 9.4 Identities = 15/35 (42%), Positives = 17/35 (48%), Gaps = 6/35 (17%) Frame = -1 Query: 353 RRCTEPAAWSGKAGEAAPGG------HRRPPRGAW 267 R C+ P GK G+A GG R PPR AW Sbjct: 22 RPCSSPVVIPGKDGKAFLGGTPSPRTRRLPPRLAW 56
>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) (pp68) Length = 623 Score = 27.3 bits (59), Expect = 9.4 Identities = 16/33 (48%), Positives = 17/33 (51%) Frame = -2 Query: 355 RGAVPSRRRGVEKPARRHQEATAAPRGEPGHGR 257 RGA PSR RG P R A + RG PG R Sbjct: 504 RGAAPSRGRGAAPPRGR---AGYSQRGGPGSAR 533
>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Glycine-and tyrosine-rich RNA-binding protein) (GRY-RBP) (NS1-associated protein 1) Length = 623 Score = 27.3 bits (59), Expect = 9.4 Identities = 16/33 (48%), Positives = 17/33 (51%) Frame = -2 Query: 355 RGAVPSRRRGVEKPARRHQEATAAPRGEPGHGR 257 RGA PSR RG P R A + RG PG R Sbjct: 504 RGAAPSRGRGAAPPRGR---AGYSQRGGPGSAR 533
>IGF2_HUMAN (P01344) Insulin-like growth factor II precursor (IGF-II)| (Somatomedin A) [Contains: Insulin-like growth factor II Ala-25 Del] Length = 180 Score = 27.3 bits (59), Expect = 9.4 Identities = 12/36 (33%), Positives = 19/36 (52%) Frame = -2 Query: 355 RGAVPSRRRGVEKPARRHQEATAAPRGEPGHGRSEP 248 RG V ++ + A+RH+ A P +P HG + P Sbjct: 138 RGHVLAKELEAFREAKRHRPLIALPTQDPAHGGAPP 173
>ICP0_HHV11 (P08393) Trans-acting transcriptional protein ICP0 (Immediate-early| protein IE110) (VMW110) (Alpha-0 protein) Length = 775 Score = 27.3 bits (59), Expect = 9.4 Identities = 14/36 (38%), Positives = 16/36 (44%) Frame = -2 Query: 355 RGAVPSRRRGVEKPARRHQEATAAPRGEPGHGRSEP 248 RGA PS + A QEA PR G G+ P Sbjct: 478 RGAAPSGAAPLPSAASVEQEAAVRPRKRRGSGQENP 513
>BBC3_RAT (Q80ZG6) Bcl-2-binding component 3 (p53 up-regulated modulator of| apoptosis) Length = 193 Score = 27.3 bits (59), Expect = 9.4 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = -1 Query: 338 PAAWSGKAGEAAPGGHRRPPRGAWP 264 PA + G PGGHR PRG P Sbjct: 66 PAVTAALGGPRWPGGHRSRPRGPRP 90
>BBC3_MOUSE (Q99ML1) Bcl-2 binding component 3 (p53 up-regulated modulator of| apoptosis) Length = 193 Score = 27.3 bits (59), Expect = 9.4 Identities = 12/25 (48%), Positives = 13/25 (52%) Frame = -1 Query: 338 PAAWSGKAGEAAPGGHRRPPRGAWP 264 PA + G PGGHR PRG P Sbjct: 66 PAVTAALGGPRWPGGHRSRPRGPRP 90
>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)| (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic RNA-interacting protein) (Liver regeneration-related protein LRRG077) Length = 533 Score = 27.3 bits (59), Expect = 9.4 Identities = 16/33 (48%), Positives = 17/33 (51%) Frame = -2 Query: 355 RGAVPSRRRGVEKPARRHQEATAAPRGEPGHGR 257 RGA PSR RG P R A + RG PG R Sbjct: 414 RGAAPSRGRGAAPPRGR---AGYSQRGGPGSAR 443
>COHA1_CHICK (Q90584) Collagen alpha-1(XVII) chain (Bullous pemphigoid antigen| 2) (180 kDa bullous pemphigoid antigen 2) (Fragment) Length = 1146 Score = 27.3 bits (59), Expect = 9.4 Identities = 16/35 (45%), Positives = 19/35 (54%), Gaps = 4/35 (11%) Frame = -2 Query: 328 GVEKP-ARRHQEATAAPRGE---PGHGRSEPRGPA 236 G+E P +R +E PRGE PG G RGPA Sbjct: 201 GMEGPMGQRGREGLPGPRGEPGPPGFGEKGDRGPA 235 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,851,663 Number of Sequences: 219361 Number of extensions: 519111 Number of successful extensions: 2764 Number of sequences better than 10.0: 74 Number of HSP's better than 10.0 without gapping: 2428 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2757 length of database: 80,573,946 effective HSP length: 95 effective length of database: 59,734,651 effective search space used: 1433631624 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)