ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl42e09 |
|---|---|
| Clone Library Name | barley_pub |
>gb|AY261359.1| Bovine herpesvirus 5 strain SV507/99, complete genome Length = 138390 Score = 48.1 bits (24), Expect = 0.020 Identities = 27/28 (96%) Strand = Plus / Minus Query: 102 cggcgtccaggctctcgcgcgcggcgcg 129 |||||||||||| ||||||||||||||| Sbjct: 34083 cggcgtccaggcgctcgcgcgcggcgcg 34056
>emb|Z78205.1|BHT1UL Bovine herpesvirus type 1 UL22-35 genes Length = 37000 Score = 48.1 bits (24), Expect = 0.020 Identities = 27/28 (96%) Strand = Plus / Minus Query: 102 cggcgtccaggctctcgcgcgcggcgcg 129 |||||||||||| ||||||||||||||| Sbjct: 2160 cggcgtccaggcgctcgcgcgcggcgcg 2133
>emb|AJ004801.1|BHV1CGEN Bovine herpesvirus type 1.1 complete genome Length = 135301 Score = 48.1 bits (24), Expect = 0.020 Identities = 27/28 (96%) Strand = Plus / Minus Query: 102 cggcgtccaggctctcgcgcgcggcgcg 129 |||||||||||| ||||||||||||||| Sbjct: 32960 cggcgtccaggcgctcgcgcgcggcgcg 32933 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 gcgcgcggcgcgggccgccg 137 |||||||||||||||||||| Sbjct: 99794 gcgcgcggcgcgggccgccg 99813
>ref|NM_193978.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 285 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 131 gccgccgccgtggcccgccgcc 152 |||||||||||||||||||||| Sbjct: 51 gccgccgccgtggcccgccgcc 30
>gb|AC147804.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0070G02 map near S13580, complete sequence Length = 73686 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 131 gccgccgccgtggcccgccgcc 152 |||||||||||||||||||||| Sbjct: 394 gccgccgccgtggcccgccgcc 415 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 131 gccgccgccgtggcccgccgcc 152 |||||||||||||||||||||| Sbjct: 327 gccgccgccgtggcccgccgcc 348
>gb|AC145780.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0069P02 map near S13580, complete sequence Length = 88044 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 131 gccgccgccgtggcccgccgcc 152 |||||||||||||||||||||| Sbjct: 70092 gccgccgccgtggcccgccgcc 70113 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 131 gccgccgccgtggcccgccgcc 152 |||||||||||||||||||||| Sbjct: 70025 gccgccgccgtggcccgccgcc 70046
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 131 gccgccgccgtggcccgccgcc 152 |||||||||||||||||||||| Sbjct: 24025437 gccgccgccgtggcccgccgcc 24025416 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 130 ggccgccgccgtggcccgccgcct 153 |||||||||||| ||||||||||| Sbjct: 22295241 ggccgccgccgtcgcccgccgcct 22295264
>tpg|BK000876.1| TPA: TPA_inf: Oryza sativa transposon Rim2-M270, complete sequence Length = 9579 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 131 gccgccgccgtggcccgccgcc 152 |||||||||||||||||||||| Sbjct: 5045 gccgccgccgtggcccgccgcc 5066
>tpg|BK000362.1| TPA: TPA_exp: Oryza sativa transposon Rim2-M82 transposase gene, complete cds Length = 16854 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 131 gccgccgccgtggcccgccgcc 152 |||||||||||||||||||||| Sbjct: 5048 gccgccgccgtggcccgccgcc 5069
>tpg|BK000344.1| TPA: TPA_exp: Oryza sativa (indica cultivar-group) transposon Rim2-M64 transposase gene, complete cds Length = 10556 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 131 gccgccgccgtggcccgccgcc 152 |||||||||||||||||||||| Sbjct: 5206 gccgccgccgtggcccgccgcc 5227
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 131 gccgccgccgtggcccgccgcc 152 |||||||||||||||||||||| Sbjct: 6289782 gccgccgccgtggcccgccgcc 6289803 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 131 gccgccgccgtggcccgccgcc 152 |||||||||||||||||||||| Sbjct: 6110684 gccgccgccgtggcccgccgcc 6110663 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 131 gccgccgccgtggcccgccgcc 152 |||||||||||||||||||||| Sbjct: 6040621 gccgccgccgtggcccgccgcc 6040642
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 131 gccgccgccgtggcccgccgcc 152 |||||||||||||||||||||| Sbjct: 2960589 gccgccgccgtggcccgccgcc 2960568 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 131 gccgccgccgtggcccgccgcc 152 |||||||||||||||||||||| Sbjct: 2960522 gccgccgccgtggcccgccgcc 2960501
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 131 gccgccgccgtggcccgccgcc 152 |||||||||||||||||||||| Sbjct: 22161813 gccgccgccgtggcccgccgcc 22161792
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 131 gccgccgccgtggcccgccgcc 152 |||||||||||||||||||||| Sbjct: 23938517 gccgccgccgtggcccgccgcc 23938496 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 131 gccgccgccgtggcccgccgcc 152 |||||||||||||||||||||| Sbjct: 23938450 gccgccgccgtggcccgccgcc 23938429 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 130 ggccgccgccgtggcccgccgcct 153 |||||||||||| ||||||||||| Sbjct: 22288270 ggccgccgccgtcgcccgccgcct 22288293
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 131 gccgccgccgtggcccgccgcc 152 |||||||||||||||||||||| Sbjct: 14848622 gccgccgccgtggcccgccgcc 14848643 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 131 gccgccgccgtggcccgccgcc 152 |||||||||||||||||||||| Sbjct: 14352386 gccgccgccgtggcccgccgcc 14352407
>dbj|BA000030.2| Streptomyces avermitilis MA-4680 genomic DNA, complete genome Length = 9025608 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 117 cgcgcgcggcgcgggccgccgc 138 |||||||||||||||||||||| Sbjct: 7658146 cgcgcgcggcgcgggccgccgc 7658167
>dbj|AP005658.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0620D11 Length = 140245 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 131 gccgccgccgtggcccgccgcc 152 |||||||||||||||||||||| Sbjct: 79112 gccgccgccgtggcccgccgcc 79091
>dbj|AP003856.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0697D09 Length = 158479 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 131 gccgccgccgtggcccgccgcc 152 |||||||||||||||||||||| Sbjct: 33448 gccgccgccgtggcccgccgcc 33469
>dbj|AP003207.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1157F09 Length = 148802 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 131 gccgccgccgtggcccgccgcc 152 |||||||||||||||||||||| Sbjct: 103663 gccgccgccgtggcccgccgcc 103684
>dbj|AP003312.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0025H06 Length = 151547 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 131 gccgccgccgtggcccgccgcc 152 |||||||||||||||||||||| Sbjct: 13783 gccgccgccgtggcccgccgcc 13804
>dbj|AP003021.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0503E05 Length = 168258 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 131 gccgccgccgtggcccgccgcc 152 |||||||||||||||||||||| Sbjct: 84666 gccgccgccgtggcccgccgcc 84687
>dbj|AP005409.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBa0024L18 Length = 150128 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 131 gccgccgccgtggcccgccgcc 152 |||||||||||||||||||||| Sbjct: 6644 gccgccgccgtggcccgccgcc 6623 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 131 gccgccgccgtggcccgccgcc 152 |||||||||||||||||||||| Sbjct: 6577 gccgccgccgtggcccgccgcc 6556
>dbj|AP005632.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0050B07 Length = 142134 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 131 gccgccgccgtggcccgccgcc 152 |||||||||||||||||||||| Sbjct: 130876 gccgccgccgtggcccgccgcc 130855 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 131 gccgccgccgtggcccgccgcc 152 |||||||||||||||||||||| Sbjct: 130809 gccgccgccgtggcccgccgcc 130788
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 131 gccgccgccgtggcccgccgcc 152 |||||||||||||||||||||| Sbjct: 6289657 gccgccgccgtggcccgccgcc 6289678 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 131 gccgccgccgtggcccgccgcc 152 |||||||||||||||||||||| Sbjct: 6110586 gccgccgccgtggcccgccgcc 6110565 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 131 gccgccgccgtggcccgccgcc 152 |||||||||||||||||||||| Sbjct: 6040523 gccgccgccgtggcccgccgcc 6040544
>emb|BX664712.3|CNS09SC2 Oryza sativa chromosome 12, . BAC B1373G08 of chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 131531 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 131 gccgccgccgtggcccgccgcc 152 |||||||||||||||||||||| Sbjct: 7693 gccgccgccgtggcccgccgcc 7672
>emb|AL831805.4|CNS08CAI Oryza sativa chromosome 12, . BAC OSJNBa0085J02 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 166508 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 131 gccgccgccgtggcccgccgcc 152 |||||||||||||||||||||| Sbjct: 49490 gccgccgccgtggcccgccgcc 49469
>emb|AL732382.5|CNS08C95 Oryza sativa chromosome 12, . BAC OJ1126_C09 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 104737 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 131 gccgccgccgtggcccgccgcc 152 |||||||||||||||||||||| Sbjct: 2505 gccgccgccgtggcccgccgcc 2484
>emb|AL928778.4|CNS08CC8 Oryza sativa chromosome 12, . BAC OSJNBb0074J13 of library OSJNBb from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 125153 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Minus Query: 131 gccgccgccgtggcccgccgcc 152 |||||||||||||||||||||| Sbjct: 64725 gccgccgccgtggcccgccgcc 64704
>dbj|AP006840.1| Symbiobacterium thermophilum IAM 14863 DNA, complete genome Length = 3566135 Score = 44.1 bits (22), Expect = 0.31 Identities = 22/22 (100%) Strand = Plus / Plus Query: 274 ccccgcggggggcggcggtggc 295 |||||||||||||||||||||| Sbjct: 1195682 ccccgcggggggcggcggtggc 1195703
>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence Length = 3510148 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 120 gcgcggcgcgggccgccgccg 140 ||||||||||||||||||||| Sbjct: 2017491 gcgcggcgcgggccgccgccg 2017511
>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence Length = 4126292 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 120 gcgcggcgcgggccgccgccg 140 ||||||||||||||||||||| Sbjct: 1414718 gcgcggcgcgggccgccgccg 1414698
>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence Length = 3363523 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 120 gcgcggcgcgggccgccgccg 140 ||||||||||||||||||||| Sbjct: 243518 gcgcggcgcgggccgccgccg 243498
>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence Length = 4074542 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 120 gcgcggcgcgggccgccgccg 140 ||||||||||||||||||||| Sbjct: 1286652 gcgcggcgcgggccgccgccg 1286632
>gb|AC090433.10| Chlamydomonas reinhardtii clone cr-19b23, complete sequence Length = 118183 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 120 gcgcggcgcgggccgccgccg 140 ||||||||||||||||||||| Sbjct: 10302 gcgcggcgcgggccgccgccg 10322
>gb|AE012473.1| Xanthomonas campestris pv. campestris str. ATCC 33913, section 381 of 460 of the complete genome Length = 11134 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Plus Query: 120 gcgcggcgcgggccgccgccgtggc 144 |||||||||||||||| |||||||| Sbjct: 2528 gcgcggcgcgggccgcggccgtggc 2552
>gb|CP000230.1| Rhodospirillum rubrum ATCC 11170, complete genome Length = 4352825 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Minus Query: 120 gcgcggcgcgggccgccgccg 140 ||||||||||||||||||||| Sbjct: 3647553 gcgcggcgcgggccgccgccg 3647533
>gb|CP000050.1| Xanthomonas campestris pv. campestris str. 8004, complete genome Length = 5148708 Score = 42.1 bits (21), Expect = 1.2 Identities = 24/25 (96%) Strand = Plus / Minus Query: 120 gcgcggcgcgggccgccgccgtggc 144 |||||||||||||||| |||||||| Sbjct: 754705 gcgcggcgcgggccgcggccgtggc 754681
>dbj|AB193609.1| Streptomyces sp. NRRL 11266 tetronomycin biosynthetic gene cluster, partial and complete cds Length = 113234 Score = 42.1 bits (21), Expect = 1.2 Identities = 21/21 (100%) Strand = Plus / Plus Query: 131 gccgccgccgtggcccgccgc 151 ||||||||||||||||||||| Sbjct: 108443 gccgccgccgtggcccgccgc 108463
>gb|AC153812.1| Homo sapiens chromosome 9 clone fa1022, complete sequence Length = 38508 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 ctcctcccatggccaggctc 274 |||||||||||||||||||| Sbjct: 31863 ctcctcccatggccaggctc 31882
>ref|XM_521470.1| PREDICTED: Pan troglodytes similar to Rho GTPase activating protein 2 (LOC466068), mRNA Length = 2877 Score = 40.1 bits (20), Expect = 4.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 171 agcccctcccgcgagcactcgcgccgct 198 |||||| ||||||||||| ||||||||| Sbjct: 2539 agccccacccgcgagcacgcgcgccgct 2566
>gb|CP000145.1| Rhodobacter sphaeroides 2.4.1 plasmid B, complete sequence Length = 114178 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 124 ggcgcgggccgccgccgtgg 143 |||||||||||||||||||| Sbjct: 82784 ggcgcgggccgccgccgtgg 82803
>gb|AC092778.5| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0015G17, complete sequence Length = 158173 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 130 ggccgccgccgtggcccgccgcct 153 |||||||||||| ||||||||||| Sbjct: 53577 ggccgccgccgtcgcccgccgcct 53554
>gb|AE000516.2| Mycobacterium tuberculosis CDC1551, complete genome Length = 4403837 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 cttctccaccgccaccaagg 233 |||||||||||||||||||| Sbjct: 3216686 cttctccaccgccaccaagg 3216667
>gb|CP000353.1| Ralstonia metallidurans CH34 megaplasmid, complete sequence Length = 2580084 Score = 40.1 bits (20), Expect = 4.8 Identities = 26/28 (92%) Strand = Plus / Plus Query: 328 cacgccgccggctcggtacagcgcctcg 355 |||||||||||| |||| |||||||||| Sbjct: 2478947 cacgccgccggcgcggttcagcgcctcg 2478974
>emb|AM039952.1| Xanthomonas campestris pv. vesicatoria complete genome Length = 5178466 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 ctccaccgccaccaaggtca 236 |||||||||||||||||||| Sbjct: 72456 ctccaccgccaccaaggtca 72475
>ref|XM_546750.2| PREDICTED: Canis familiaris similar to G protein-coupled receptor 153 (LOC489630), mRNA Length = 1791 Score = 40.1 bits (20), Expect = 4.8 Identities = 26/28 (92%) Strand = Plus / Minus Query: 120 gcgcggcgcgggccgccgccgtggcccg 147 ||||||||||||| ||||||| |||||| Sbjct: 1415 gcgcggcgcgggctgccgccggggcccg 1388
>emb|CR392000.2| Human DNA sequence from clone WI2-1959D15 on chromosome 9, complete sequence Length = 32108 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 255 ctcctcccatggccaggctc 274 |||||||||||||||||||| Sbjct: 18908 ctcctcccatggccaggctc 18927
>emb|AL589723.7| Human DNA sequence from clone RP11-204B7 on chromosome 6 Contains the TPMT gene for thiopurine S-methyltransferase, the gene for a novel protein similar to (TAT-interactive protein, 72-KD; tripartite motif protein TRIM32; zinc-finger protein HT2A), complete sequence Length = 147927 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 228 ccaaggtcagcaggccctcg 247 |||||||||||||||||||| Sbjct: 96769 ccaaggtcagcaggccctcg 96750
>gb|CP000319.1| Nitrobacter hamburgensis X14, complete genome Length = 4406967 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 117 cgcgcgcggcgcgggccgccgccg 140 ||||||| |||||||||||||||| Sbjct: 847577 cgcgcgccgcgcgggccgccgccg 847554
>emb|AL359649.8| Human DNA sequence from clone RP11-65D24 on chromosome 13 Contains 2 novel genes, complete sequence Length = 144792 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 287 ggcggtggcctcctggtgcc 306 |||||||||||||||||||| Sbjct: 89863 ggcggtggcctcctggtgcc 89882
>emb|CR626927.1| Bacteroides fragilis NCTC 9343, complete genome Length = 5205140 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 243 cctcgtggttcgctcctccc 262 |||||||||||||||||||| Sbjct: 4747824 cctcgtggttcgctcctccc 4747843
>emb|BX842581.1| Mycobacterium tuberculosis H37Rv complete genome; segment 10/13 Length = 348676 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 cttctccaccgccaccaagg 233 |||||||||||||||||||| Sbjct: 103495 cttctccaccgccaccaagg 103476
>emb|BX248344.1| Mycobacterium bovis subsp. bovis AF2122/97 complete genome; segment 11/14 Length = 318050 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 214 cttctccaccgccaccaagg 233 |||||||||||||||||||| Sbjct: 54048 cttctccaccgccaccaagg 54029
>gb|AE011632.1| Xanthomonas axonopodis pv. citri str. 306, section 10 of 469 of the complete genome Length = 12529 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 217 ctccaccgccaccaaggtca 236 |||||||||||||||||||| Sbjct: 183 ctccaccgccaccaaggtca 202
>dbj|AP007255.1| Magnetospirillum magneticum AMB-1 DNA, complete genome Length = 4967148 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 134 gccgccgtggcccgccgcct 153 |||||||||||||||||||| Sbjct: 2264908 gccgccgtggcccgccgcct 2264889 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 gcgcgcggcgcgggccgccg 137 |||||||||||||||||||| Sbjct: 1747410 gcgcgcggcgcgggccgccg 1747429
>gb|AY064172.1| Bovine herpesvirus 5 Us9 protein gene, complete cds Length = 1009 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 121 cgcggcgcgggccgccgccg 140 |||||||||||||||||||| Sbjct: 650 cgcggcgcgggccgccgccg 669
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 168 gcgagcccctcccgcgagcactcg 191 |||||||||||||||| ||||||| Sbjct: 3592468 gcgagcccctcccgcgtgcactcg 3592491 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 120 gcgcggcgcgggccgccgcc 139 |||||||||||||||||||| Sbjct: 450282 gcgcggcgcgggccgccgcc 450263
>gb|AE017285.1| Desulfovibrio vulgaris subsp. vulgaris str. Hildenborough, complete genome Length = 3570858 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 131 gccgccgccgtggcccgccgcctg 154 |||||||||||||||||| ||||| Sbjct: 1985153 gccgccgccgtggcccgcggcctg 1985176
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 120 gcgcggcgcgggccgccgcc 139 |||||||||||||||||||| Sbjct: 3030819 gcgcggcgcgggccgccgcc 3030838 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 119 cgcgcggcgcgggccgccgc 138 |||||||||||||||||||| Sbjct: 2787610 cgcgcggcgcgggccgccgc 2787591 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 115 ctcgcgcgcggcgcgggccg 134 |||||||||||||||||||| Sbjct: 859008 ctcgcgcgcggcgcgggccg 859027
>dbj|AP006841.1| Bacteroides fragilis YCH46 DNA, complete genome Length = 5277274 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 243 cctcgtggttcgctcctccc 262 |||||||||||||||||||| Sbjct: 4816194 cctcgtggttcgctcctccc 4816213
>emb|CT573326.1| Pseudomonas entomophila str. L48 chromosome,complete sequence Length = 5888780 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 133 cgccgccgtggcccgccgcctggc 156 ||||||||||||| |||||||||| Sbjct: 5745402 cgccgccgtggccagccgcctggc 5745379
>emb|AL646052.1| Ralstonia solanacearum GMI1000 chromosome complete sequence Length = 3716413 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 143 gcccgccgcctggcagccggcagc 166 |||||||||||| ||||||||||| Sbjct: 1968111 gcccgccgcctgccagccggcagc 1968134
>gb|AE016825.1| Chromobacterium violaceum ATCC 12472, complete genome Length = 4751080 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 115 ctcgcgcgcggcgcgggccg 134 |||||||||||||||||||| Sbjct: 3676589 ctcgcgcgcggcgcgggccg 3676570
>gb|U30516.1|HSTPMT07 Human thiopurine methyltransferase (TPMT) gene, exon 8 Length = 577 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 ccaaggtcagcaggccctcg 247 |||||||||||||||||||| Sbjct: 21 ccaaggtcagcaggccctcg 40
>dbj|AP004949.1| Lotus japonicus genomic DNA, chromosome 1, clone:LjT45F11, TM0122, complete sequence Length = 90864 Score = 40.1 bits (20), Expect = 4.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 59 tggtacagctaaaccctaaaccct 82 ||||||| |||||||||||||||| Sbjct: 52948 tggtacacctaaaccctaaaccct 52925
>gb|M84464.1|HSBP135A Bovine herpesvirus type 1 p135 protein (EI2.9/E2.6) gene, complete cds Length = 3330 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 118 gcgcgcggcgcgggccgccg 137 |||||||||||||||||||| Sbjct: 3235 gcgcgcggcgcgggccgccg 3216
>gb|M61143.1|HSBLRAA Bovine herpesvirus type 1 latency-related open reading frames 1 and 2, complete cds Length = 2611 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 118 gcgcgcggcgcgggccgccg 137 |||||||||||||||||||| Sbjct: 81 gcgcgcggcgcgggccgccg 100
>dbj|AB045146.1| Homo sapiens TPMT gene for thiopurine S-methyltransferase, complete cds Length = 27870 Score = 40.1 bits (20), Expect = 4.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 228 ccaaggtcagcaggccctcg 247 |||||||||||||||||||| Sbjct: 21739 ccaaggtcagcaggccctcg 21758 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,661,179 Number of Sequences: 3902068 Number of extensions: 2661179 Number of successful extensions: 71930 Number of sequences better than 10.0: 68 Number of HSP's better than 10.0 without gapping: 68 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 68120 Number of HSP's gapped (non-prelim): 3810 length of query: 359 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 337 effective length of database: 17,147,199,772 effective search space: 5778606323164 effective search space used: 5778606323164 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
