ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl42e03 |
|---|---|
| Clone Library Name | barley_pub |
>gb|DQ019632.1| Triticum aestivum nuclear transportin (TRN-SR) mRNA, complete cds Length = 3319 Score = 567 bits (286), Expect = e-158 Identities = 310/318 (97%) Strand = Plus / Plus Query: 99 catggaggcgcaggccacggcgacggtgaaggaggcgcttgcggcgctataccaccaccc 158 ||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||| Sbjct: 8 catggaggcgcaggccacggcgacggtgaaggaggcgctcgcggcgctgtaccaccaccc 67 Query: 159 cgacgacaccacccgcaccgctgccgaccgctggctgcagaagtttcagcacacgcttga 218 ||||||| ||| |||| |||||||||||||||||||||||||||||||||||||||| || Sbjct: 68 cgacgacgccatccgcgccgctgccgaccgctggctgcagaagtttcagcacacgctcga 127 Query: 219 cgcgtggcaggtagctgacagcttacttcatgacgaaagcagcaatttagagactctcat 278 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 128 cgcgtggcaggtagctgacagcttacttcatgacgaaagcagcaatttagagactctcat 187 Query: 279 gttttgttctcagactctcagaagcaaggtgcaaagggattttgaggagttaccatccga 338 |||||||||||||||||||||||||||||||||||||||||||||||||||||| || || Sbjct: 188 gttttgttctcagactctcagaagcaaggtgcaaagggattttgaggagttaccgtcaga 247 Query: 339 agcttttcgaccattgcaagactctctatatggattgctaaagaaatttaacaaaggacc 398 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct: 248 agcttttcgaccattgcaagactctctatatggattgctaaagaaatttaacaaaggacc 307 Query: 399 accaaaagttagaacaca 416 |||||||||||||||||| Sbjct: 308 accaaaagttagaacaca 325
>ref|NM_197011.1| Oryza sativa (japonica cultivar-group) putative nuclear transport receptor (OSJNBa0026O12.16), mRNA Length = 366 Score = 303 bits (153), Expect = 2e-79 Identities = 276/317 (87%) Strand = Plus / Plus Query: 100 atggaggcgcaggccacggcgacggtgaaggaggcgcttgcggcgctataccaccacccc 159 ||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||| Sbjct: 1 atggaggcgcaggccacggcggcggtgaaggaggcgctggcggcgctgtaccaccacccc 60 Query: 160 gacgacaccacccgcaccgctgccgaccgctggctgcagaagtttcagcacacgcttgac 219 |||||| |||| |||||||| |||||||| ||||||||| |||| ||||||||||| ||| Sbjct: 61 gacgacgccacgcgcaccgccgccgaccggtggctgcagcagttccagcacacgctcgac 120 Query: 220 gcgtggcaggtagctgacagcttacttcatgacgaaagcagcaatttagagactctcatg 279 |||||||||||||||||||||||||||||||| ||||| || ||| | ||||||| || Sbjct: 121 gcgtggcaggtagctgacagcttacttcatgatgaaagtagtaatatggagactcaaatc 180 Query: 280 ttttgttctcagactctcagaagcaaggtgcaaagggattttgaggagttaccatccgaa 339 || || ||||| || |||||||||||||| |||||||| ||||| || ||||| || ||| Sbjct: 181 ttctgctctcaaaccctcagaagcaaggtacaaagggactttgaagaattaccttcagaa 240 Query: 340 gcttttcgaccattgcaagactctctatatggattgctaaagaaatttaacaaaggacca 399 ||||| || || | ||||| |||||||||| |||||| || ||||||| ||||| ||| Sbjct: 241 gctttccgtccgctacaagattctctatatgcattgctgaaaaaatttagtaaagggcca 300 Query: 400 ccaaaagttagaacaca 416 | ||||||||||||||| Sbjct: 301 caaaaagttagaacaca 317
>dbj|AK102336.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033091A14, full insert sequence Length = 3529 Score = 303 bits (153), Expect = 2e-79 Identities = 276/317 (87%) Strand = Plus / Plus Query: 100 atggaggcgcaggccacggcgacggtgaaggaggcgcttgcggcgctataccaccacccc 159 ||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||| Sbjct: 224 atggaggcgcaggccacggcggcggtgaaggaggcgctggcggcgctgtaccaccacccc 283 Query: 160 gacgacaccacccgcaccgctgccgaccgctggctgcagaagtttcagcacacgcttgac 219 |||||| |||| |||||||| |||||||| ||||||||| |||| ||||||||||| ||| Sbjct: 284 gacgacgccacgcgcaccgccgccgaccggtggctgcagcagttccagcacacgctcgac 343 Query: 220 gcgtggcaggtagctgacagcttacttcatgacgaaagcagcaatttagagactctcatg 279 |||||||||||||||||||||||||||||||| ||||| || ||| | ||||||| || Sbjct: 344 gcgtggcaggtagctgacagcttacttcatgatgaaagtagtaatatggagactcaaatc 403 Query: 280 ttttgttctcagactctcagaagcaaggtgcaaagggattttgaggagttaccatccgaa 339 || || ||||| || |||||||||||||| |||||||| ||||| || ||||| || ||| Sbjct: 404 ttctgctctcaaaccctcagaagcaaggtacaaagggactttgaagaattaccttcagaa 463 Query: 340 gcttttcgaccattgcaagactctctatatggattgctaaagaaatttaacaaaggacca 399 ||||| || || | ||||| |||||||||| |||||| || ||||||| ||||| ||| Sbjct: 464 gctttccgtccgctacaagattctctatatgcattgctgaaaaaatttagtaaagggcca 523 Query: 400 ccaaaagttagaacaca 416 | ||||||||||||||| Sbjct: 524 caaaaagttagaacaca 540
>gb|AC078829.10| Oryza sativa chromosome 10 BAC OSJNBa0026O12 genomic sequence, complete sequence Length = 163279 Score = 180 bits (91), Expect = 2e-42 Identities = 121/131 (92%) Strand = Plus / Minus Query: 100 atggaggcgcaggccacggcgacggtgaaggaggcgcttgcggcgctataccaccacccc 159 ||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||| Sbjct: 29035 atggaggcgcaggccacggcggcggtgaaggaggcgctggcggcgctgtaccaccacccc 28976 Query: 160 gacgacaccacccgcaccgctgccgaccgctggctgcagaagtttcagcacacgcttgac 219 |||||| |||| |||||||| |||||||| ||||||||| |||| ||||||||||| ||| Sbjct: 28975 gacgacgccacgcgcaccgccgccgaccggtggctgcagcagttccagcacacgctcgac 28916 Query: 220 gcgtggcaggt 230 ||||||||||| Sbjct: 28915 gcgtggcaggt 28905 Score = 71.9 bits (36), Expect = 2e-09 Identities = 72/84 (85%) Strand = Plus / Minus Query: 225 gcaggtagctgacagcttacttcatgacgaaagcagcaatttagagactctcatgttttg 284 ||||||||||||||||||||||||||| ||||| || ||| | ||||||| || || || Sbjct: 27967 gcaggtagctgacagcttacttcatgatgaaagtagtaatatggagactcaaatcttctg 27908 Query: 285 ttctcagactctcagaagcaaggt 308 ||||| || |||||||||||||| Sbjct: 27907 ctctcaaaccctcagaagcaaggt 27884 Score = 42.1 bits (21), Expect = 1.4 Identities = 39/45 (86%) Strand = Plus / Minus Query: 372 attgctaaagaaatttaacaaaggaccaccaaaagttagaacaca 416 |||||| || ||||||| ||||| |||| ||||||||||||||| Sbjct: 27441 attgctgaaaaaatttagtaaagggccacaaaaagttagaacaca 27397
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 180 bits (91), Expect = 2e-42 Identities = 121/131 (92%) Strand = Plus / Plus Query: 100 atggaggcgcaggccacggcgacggtgaaggaggcgcttgcggcgctataccaccacccc 159 ||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||| Sbjct: 17343244 atggaggcgcaggccacggcggcggtgaaggaggcgctggcggcgctgtaccaccacccc 17343303 Query: 160 gacgacaccacccgcaccgctgccgaccgctggctgcagaagtttcagcacacgcttgac 219 |||||| |||| |||||||| |||||||| ||||||||| |||| ||||||||||| ||| Sbjct: 17343304 gacgacgccacgcgcaccgccgccgaccggtggctgcagcagttccagcacacgctcgac 17343363 Query: 220 gcgtggcaggt 230 ||||||||||| Sbjct: 17343364 gcgtggcaggt 17343374 Score = 71.9 bits (36), Expect = 2e-09 Identities = 72/84 (85%) Strand = Plus / Plus Query: 225 gcaggtagctgacagcttacttcatgacgaaagcagcaatttagagactctcatgttttg 284 ||||||||||||||||||||||||||| ||||| || ||| | ||||||| || || || Sbjct: 17344312 gcaggtagctgacagcttacttcatgatgaaagtagtaatatggagactcaaatcttctg 17344371 Query: 285 ttctcagactctcagaagcaaggt 308 ||||| || |||||||||||||| Sbjct: 17344372 ctctcaaaccctcagaagcaaggt 17344395 Score = 42.1 bits (21), Expect = 1.4 Identities = 39/45 (86%) Strand = Plus / Plus Query: 372 attgctaaagaaatttaacaaaggaccaccaaaagttagaacaca 416 |||||| || ||||||| ||||| |||| ||||||||||||||| Sbjct: 17344838 attgctgaaaaaatttagtaaagggccacaaaaagttagaacaca 17344882
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 180 bits (91), Expect = 2e-42 Identities = 121/131 (92%) Strand = Plus / Plus Query: 100 atggaggcgcaggccacggcgacggtgaaggaggcgcttgcggcgctataccaccacccc 159 ||||||||||||||||||||| |||||||||||||||| |||||||| |||||||||||| Sbjct: 17352284 atggaggcgcaggccacggcggcggtgaaggaggcgctggcggcgctgtaccaccacccc 17352343 Query: 160 gacgacaccacccgcaccgctgccgaccgctggctgcagaagtttcagcacacgcttgac 219 |||||| |||| |||||||| |||||||| ||||||||| |||| ||||||||||| ||| Sbjct: 17352344 gacgacgccacgcgcaccgccgccgaccggtggctgcagcagttccagcacacgctcgac 17352403 Query: 220 gcgtggcaggt 230 ||||||||||| Sbjct: 17352404 gcgtggcaggt 17352414 Score = 71.9 bits (36), Expect = 2e-09 Identities = 72/84 (85%) Strand = Plus / Plus Query: 225 gcaggtagctgacagcttacttcatgacgaaagcagcaatttagagactctcatgttttg 284 ||||||||||||||||||||||||||| ||||| || ||| | ||||||| || || || Sbjct: 17353352 gcaggtagctgacagcttacttcatgatgaaagtagtaatatggagactcaaatcttctg 17353411 Query: 285 ttctcagactctcagaagcaaggt 308 ||||| || |||||||||||||| Sbjct: 17353412 ctctcaaaccctcagaagcaaggt 17353435 Score = 42.1 bits (21), Expect = 1.4 Identities = 39/45 (86%) Strand = Plus / Plus Query: 372 attgctaaagaaatttaacaaaggaccaccaaaagttagaacaca 416 |||||| || ||||||| ||||| |||| ||||||||||||||| Sbjct: 17353878 attgctgaaaaaatttagtaaagggccacaaaaagttagaacaca 17353922
>dbj|AK059629.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-031-A01, full insert sequence Length = 1180 Score = 54.0 bits (27), Expect = 4e-04 Identities = 48/55 (87%) Strand = Plus / Plus Query: 362 ctctatatggattgctaaagaaatttaacaaaggaccaccaaaagttagaacaca 416 ||||||||| |||||| || ||||||| ||||| |||| ||||||||||||||| Sbjct: 1 ctctatatgcattgctgaaaaaatttagtaaagggccacaaaaagttagaacaca 55
>ref|XM_805562.1| Trypanosoma cruzi strain CL Brener hypothetical protein (Tc00.1047053511761.80) partial mRNA Length = 2913 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 183 cgaccgctggctgcagaagt 202 |||||||||||||||||||| Sbjct: 2725 cgaccgctggctgcagaagt 2706
>emb|AL118517.17|HSJ125M10 Human DNA sequence from clone RP1-125M10 on chromosome 6q25.1-25.3, complete sequence Length = 78340 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 372 attgctaaagaaatttaaca 391 |||||||||||||||||||| Sbjct: 55278 attgctaaagaaatttaaca 55259
>emb|AL939116.1|SCO939116 Streptomyces coelicolor A3(2) complete genome; segment 13/29 Length = 293050 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 92 gcgccgacatggaggcgcaggcca 115 |||||||| ||||||||||||||| Sbjct: 10016 gcgccgacctggaggcgcaggcca 9993
>ref|XM_628166.1| Cryptosporidium parvum Iowa II TPR repeat proteini (cgd1_3540), partial mRNA Length = 4503 Score = 40.1 bits (20), Expect = 5.6 Identities = 26/28 (92%) Strand = Plus / Plus Query: 304 aaggtgcaaagggattttgaggagttac 331 |||| |||||||||| |||||||||||| Sbjct: 3529 aaggagcaaagggatgttgaggagttac 3556
>gb|CP000250.1| Rhodopseudomonas palustris HaA2, complete genome Length = 5331656 Score = 40.1 bits (20), Expect = 5.6 Identities = 23/24 (95%) Strand = Plus / Minus Query: 90 cggcgccgacatggaggcgcaggc 113 |||||||||||||| ||||||||| Sbjct: 5148695 cggcgccgacatggtggcgcaggc 5148672
>gb|AC010969.11| Homo sapiens BAC clone RP11-95D17 from 2, complete sequence Length = 190748 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 311 aaagggattttgaggagtta 330 |||||||||||||||||||| Sbjct: 44023 aaagggattttgaggagtta 44042
>dbj|AK110273.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-163-C12, full insert sequence Length = 3926 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Minus Query: 164 acaccacccgcaccgctgcc 183 |||||||||||||||||||| Sbjct: 1172 acaccacccgcaccgctgcc 1153
>emb|CT573054.2| Medicago truncatula chromosome 5 clone mte1-76j13, COMPLETE SEQUENCE Length = 114731 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 310 caaagggattttgaggagtt 329 |||||||||||||||||||| Sbjct: 100438 caaagggattttgaggagtt 100457
>emb|CT025592.14| Mouse DNA sequence from clone RP23-431J17 on chromosome 16, complete sequence Length = 215987 Score = 40.1 bits (20), Expect = 5.6 Identities = 20/20 (100%) Strand = Plus / Plus Query: 277 atgttttgttctcagactct 296 |||||||||||||||||||| Sbjct: 79163 atgttttgttctcagactct 79182 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 3,088,518 Number of Sequences: 3902068 Number of extensions: 3088518 Number of successful extensions: 62676 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 16 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 62547 Number of HSP's gapped (non-prelim): 129 length of query: 416 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 394 effective length of database: 17,147,199,772 effective search space: 6755996710168 effective search space used: 6755996710168 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
