ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl42e02 |
|---|---|
| Clone Library Name | barley_pub |
>DDB1A_ARATH (Q9M0V3) DNA damage binding protein 1a (UV-damaged DNA-binding| protein 1a) (DDB1a) Length = 1088 Score = 240 bits (612), Expect = 1e-63 Identities = 113/129 (87%), Positives = 120/129 (93%) Frame = +2 Query: 80 MSTWNYVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPIYG 259 MS+WNYVVTAHKPTSV+HSCVGNFT P +LNLIVAKCTRIEIHLLTPQGLQPMLDVPIYG Sbjct: 1 MSSWNYVVTAHKPTSVTHSCVGNFTSPQELNLIVAKCTRIEIHLLTPQGLQPMLDVPIYG 60 Query: 260 RIATIELFRPHNEAQDFLFIATERYKFCVLQWDAEXSELLTRSMGAVSDRIGXPYGHGQI 439 RIAT+ELFRPH EAQDFLFIATERYKFCVLQWD E SEL+TR+MG VSDRIG P +GQI Sbjct: 61 RIATLELFRPHGEAQDFLFIATERYKFCVLQWDPESSELITRAMGDVSDRIGRPTDNGQI 120 Query: 440 GIIDPDCRL 466 GIIDPDCRL Sbjct: 121 GIIDPDCRL 129
>DDB1_LYCES (Q6QNU4) DNA damage binding protein 1 (UV-damaged DNA-binding| protein 1) (High pigmentation protein 1) Length = 1090 Score = 236 bits (601), Expect = 3e-62 Identities = 109/129 (84%), Positives = 118/129 (91%) Frame = +2 Query: 80 MSTWNYVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPIYG 259 MS WNYVVTAHKPT+V+HSCVGNFTGP +LNLI+AKCTRIEIHLLTPQGLQPMLDVPIYG Sbjct: 1 MSVWNYVVTAHKPTNVTHSCVGNFTGPQELNLIIAKCTRIEIHLLTPQGLQPMLDVPIYG 60 Query: 260 RIATIELFRPHNEAQDFLFIATERYKFCVLQWDAEXSELLTRSMGAVSDRIGXPYGHGQI 439 RIAT+ELFRPH E QD LFIATERYKFCVLQWD E SE++TR+MG VSDRIG P +GQI Sbjct: 61 RIATLELFRPHGETQDLLFIATERYKFCVLQWDTEASEVITRAMGDVSDRIGRPTDNGQI 120 Query: 440 GIIDPDCRL 466 GIIDPDCRL Sbjct: 121 GIIDPDCRL 129
>DDB1_LYCCS (Q6E7D1) DNA damage binding protein 1 (UV-damaged DNA-binding| protein 1) Length = 1095 Score = 229 bits (585), Expect = 2e-60 Identities = 109/134 (81%), Positives = 118/134 (88%), Gaps = 5/134 (3%) Frame = +2 Query: 80 MSTWNYVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQ-----PMLD 244 MS WNYVVTAHKPT+V+HSCVGNFTGP +LNLI+AKCTRIEIHLLTPQGLQ PMLD Sbjct: 1 MSVWNYVVTAHKPTNVTHSCVGNFTGPQELNLIIAKCTRIEIHLLTPQGLQCICLQPMLD 60 Query: 245 VPIYGRIATIELFRPHNEAQDFLFIATERYKFCVLQWDAEXSELLTRSMGAVSDRIGXPY 424 VPIYGRIAT+ELFRPH E QD LFIATERYKFCVLQWD E SE++TR+MG VSDRIG P Sbjct: 61 VPIYGRIATLELFRPHGETQDLLFIATERYKFCVLQWDTEASEVITRAMGDVSDRIGRPT 120 Query: 425 GHGQIGIIDPDCRL 466 +GQIGIIDPDCRL Sbjct: 121 DNGQIGIIDPDCRL 134
>DDB1B_ARATH (O49552) DNA damage binding protein 1b (UV-damaged DNA-binding| protein 1b) (DDB1b) Length = 1088 Score = 220 bits (560), Expect = 2e-57 Identities = 103/129 (79%), Positives = 114/129 (88%) Frame = +2 Query: 80 MSTWNYVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPIYG 259 MS WNY VTA KPT V+HSCVGNFT P +LNLIVAK TRIEIHLL+PQGLQ +LDVP+YG Sbjct: 1 MSVWNYAVTAQKPTCVTHSCVGNFTSPQELNLIVAKSTRIEIHLLSPQGLQTILDVPLYG 60 Query: 260 RIATIELFRPHNEAQDFLFIATERYKFCVLQWDAEXSELLTRSMGAVSDRIGXPYGHGQI 439 RIAT+ELFRPH EAQDFLF+ATERYKFCVLQWD E SEL+TR+MG VSDRIG P +GQI Sbjct: 61 RIATMELFRPHGEAQDFLFVATERYKFCVLQWDYESSELITRAMGDVSDRIGRPTDNGQI 120 Query: 440 GIIDPDCRL 466 GIIDPDCR+ Sbjct: 121 GIIDPDCRV 129
>DDB1_HUMAN (Q16531) DNA damage-binding protein 1 (Damage-specific DNA-binding| protein 1) (UV-damaged DNA-binding factor) (DDB p127 subunit) (DDBa) (UV-damaged DNA-binding protein 1) (UV-DDB 1) (Xeroderma pigmentosum group E-complementing protein) (XPCe) Length = 1140 Score = 135 bits (340), Expect = 5e-32 Identities = 64/129 (49%), Positives = 94/129 (72%), Gaps = 2/129 (1%) Frame = +2 Query: 86 TWNYVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPIYGRI 265 ++NYVVTA KPT+V+ G+FT LNL++AK TR+EI+++T +GL+P+ +V +YG+I Sbjct: 2 SYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKI 61 Query: 266 ATIELFRPHNEAQDFLFIATERYKFCVLQW--DAEXSELLTRSMGAVSDRIGXPYGHGQI 439 A +ELFRP E++D LFI T +Y C+L++ E +++TR+ G V DRIG P G I Sbjct: 62 AVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGII 121 Query: 440 GIIDPDCRL 466 GIIDP+CR+ Sbjct: 122 GIIDPECRM 130
>DDB1_CERAE (P33194) DNA damage-binding protein 1 (Damage-specific DNA-binding| protein 1) (DDB p127 subunit) (DDBa) (UV-damaged DNA-binding protein 1) (UV-DDB 1) Length = 1140 Score = 133 bits (334), Expect = 3e-31 Identities = 63/129 (48%), Positives = 93/129 (72%), Gaps = 2/129 (1%) Frame = +2 Query: 86 TWNYVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPIYGRI 265 ++NYVVTA KPT+V+ +FT LNL++AK TR+EI+++T +GL+P+ +V +YG+I Sbjct: 2 SYNYVVTAQKPTAVNGCVTAHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGKI 61 Query: 266 ATIELFRPHNEAQDFLFIATERYKFCVLQW--DAEXSELLTRSMGAVSDRIGXPYGHGQI 439 A +ELFRP E++D LFI T +Y C+L++ E +++TR+ G V DRIG P G I Sbjct: 62 AVMELFRPKGESKDLLFILTAKYNACILEYKQSGESIDIITRAHGNVQDRIGRPSETGII 121 Query: 440 GIIDPDCRL 466 GIIDP+CR+ Sbjct: 122 GIIDPECRM 130
>DDB1_SCHPO (O13807) DNA damage-binding protein 1 (Damage-specific DNA-binding| protein 1) Length = 1072 Score = 54.3 bits (129), Expect = 2e-07 Identities = 25/89 (28%), Positives = 46/89 (51%) Frame = +2 Query: 95 YVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPIYGRIATI 274 YV HKP+S+ ++ F N+IVAK +E++ L + I+ +I + Sbjct: 3 YVTYLHKPSSIRNAVFCKFVNASSWNVIVAKVNCLEVYSYENNRLCLITSANIFAKIVNV 62 Query: 275 ELFRPHNEAQDFLFIATERYKFCVLQWDA 361 + F+P + D + +AT+ +++ L WDA Sbjct: 63 KAFKPVSSPTDHIIVATDSFRYFTLFWDA 91
>RSE1_ASPFU (Q4WLI5) Pre-mRNA-splicing factor rse1| Length = 1225 Score = 45.8 bits (107), Expect = 5e-05 Identities = 21/89 (23%), Positives = 49/89 (55%), Gaps = 2/89 (2%) Frame = +2 Query: 95 YVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTP-QG-LQPMLDVPIYGRIA 268 Y +T PT+++ + +G F G + ++ A +++ IH P QG + P+ ++G I Sbjct: 10 YSLTIQPPTAITQAILGQFAGTKEQQIVTASGSKLTIHRPDPTQGKITPIYSQDVFGIIR 69 Query: 269 TIELFRPHNEAQDFLFIATERYKFCVLQW 355 T+ FR ++D++ I ++ + ++++ Sbjct: 70 TLAAFRLAGSSKDYIIIGSDSGRITIIEY 98
>RSE1_EMENI (Q5B1X8) Pre-mRNA-splicing factor rse1| Length = 1226 Score = 43.5 bits (101), Expect = 3e-04 Identities = 21/89 (23%), Positives = 48/89 (53%), Gaps = 2/89 (2%) Frame = +2 Query: 95 YVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTP-QG-LQPMLDVPIYGRIA 268 Y +T PT+++ + +G F G + ++ A +++ IH P QG + P+ ++G I Sbjct: 10 YSLTIQPPTAITQAILGQFAGTKEQQIVTASGSKLTIHRPDPTQGKVIPLYTQDVFGIIR 69 Query: 269 TIELFRPHNEAQDFLFIATERYKFCVLQW 355 T+ FR +D++ I ++ + ++++ Sbjct: 70 TLAAFRLAGSNKDYIIIGSDSGRITIIEY 98
>RSE1_USTMA (Q4PGM6) Pre-mRNA-splicing factor RSE1| Length = 1221 Score = 41.6 bits (96), Expect = 0.001 Identities = 26/98 (26%), Positives = 51/98 (52%), Gaps = 4/98 (4%) Frame = +2 Query: 95 YVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPI----YGR 262 Y +T SV+ + VG F+G Q +IVAK +R+E LL P +D + +G Sbjct: 7 YNLTLQASGSVNATVVGQFSGTRQQEIIVAKGSRLE--LLRPDTQTGKVDTVLSHDAFGV 64 Query: 263 IATIELFRPHNEAQDFLFIATERYKFCVLQWDAEXSEL 376 I ++ FR ++D++ + ++ + +L++ + + L Sbjct: 65 IRSLAAFRLTGGSKDYVIVGSDSGRIVILEYQPKTNSL 102
>RSE1_NEUCR (Q7RYR4) Pre-mRNA-splicing factor rse-1| Length = 1271 Score = 40.8 bits (94), Expect = 0.002 Identities = 22/89 (24%), Positives = 48/89 (53%), Gaps = 2/89 (2%) Frame = +2 Query: 95 YVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTP-QG-LQPMLDVPIYGRIA 268 Y +T PT+V+ + +G F+G + ++ A +R+ + P QG + +L I+G + Sbjct: 10 YSLTIQPPTAVTQALLGQFSGTKEQQILTASGSRLTLLQPDPRQGKVNTLLSHDIFGIVR 69 Query: 269 TIELFRPHNEAQDFLFIATERYKFCVLQW 355 I FR +D++ +AT+ + ++++ Sbjct: 70 AIASFRLAGSHKDYIILATDSGRITIIEY 98
>RSE1_MAGGR (Q52E49) Pre-mRNA-splicing factor RSE1| Length = 1229 Score = 40.8 bits (94), Expect = 0.002 Identities = 19/89 (21%), Positives = 51/89 (57%), Gaps = 2/89 (2%) Frame = +2 Query: 95 YVVTAHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTP-QG-LQPMLDVPIYGRIA 268 Y ++ P++++ + +G F+G + ++ A +R+ ++ P QG + P++ ++G I Sbjct: 10 YSLSIQPPSTITRAILGQFSGTKEQQIVAASGSRLTLYRPDPTQGKVVPLMSHDVFGIIR 69 Query: 269 TIELFRPHNEAQDFLFIATERYKFCVLQW 355 + FR ++D+L IA++ + ++++ Sbjct: 70 DLASFRLAGSSKDYLIIASDSGRITIVEY 98
>RIK1_SCHPO (Q10426) Silencing protein rik1| Length = 1040 Score = 35.4 bits (80), Expect = 0.073 Identities = 16/70 (22%), Positives = 36/70 (51%), Gaps = 1/70 (1%) Frame = +2 Query: 173 LIVAKCTRIEIHLLTP-QGLQPMLDVPIYGRIATIELFRPHNEAQDFLFIATERYKFCVL 349 L++ + +I I+L + GLQ +P++ + I +RP +D+LF+ + + Sbjct: 28 LVLLQALKINIYLCSEVHGLQFFTSIPLFSTVKHIRPYRPPGLDRDYLFVVLNDDTYFSI 87 Query: 350 QWDAEXSELL 379 WD + +++ Sbjct: 88 YWDEDYQKVI 97
>RSE1_CRYNE (Q5KP25) Pre-mRNA-splicing factor RSE1| Length = 1217 Score = 34.3 bits (77), Expect = 0.16 Identities = 25/88 (28%), Positives = 44/88 (50%), Gaps = 3/88 (3%) Frame = +2 Query: 101 VTAHKPTSVSHSCVGNFTG-PHQLNLIVAKCTRIEIHLL--TPQGLQPMLDVPIYGRIAT 271 +T PT+VS + VG+F+G Q L V T++EI L T L ++ +G I Sbjct: 6 LTLSSPTNVSTAVVGSFSGSKSQEILCVRGGTKLEIFKLNATTGQLDTIVSTEAFGTIRN 65 Query: 272 IELFRPHNEAQDFLFIATERYKFCVLQW 355 I FR +D++ ++ + +L++ Sbjct: 66 IAGFRLAGMTKDYILATSDSGRLSILEF 93
>EF3_ASHGO (Q75EV6) Elongation factor 3 (EF-3)| Length = 1044 Score = 30.8 bits (68), Expect = 1.8 Identities = 31/105 (29%), Positives = 45/105 (42%) Frame = +2 Query: 125 VSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTPQGLQPMLDVPIYGRIATIELFRPHNEAQ 304 VSHS + +G ++ L++A CT HL+ +LD P T L R A Sbjct: 889 VSHSRIRGLSGGQKVKLVLAACTWQRPHLI-------VLDEP------TNYLDRDSLGAL 935 Query: 305 DFLFIATERYKFCVLQWDAEXSELLTRSMGAVSDRIGXPYGHGQI 439 A E ++ AE ++ LT + AV D I P GH + Sbjct: 936 SKALKAFEG-GVIIITHSAEFTKDLTEEVWAVKDGIMTPSGHNWV 979
>YR648_MIMIV (Q5UR09) Hypothetical protein R648| Length = 400 Score = 30.4 bits (67), Expect = 2.3 Identities = 32/133 (24%), Positives = 58/133 (43%), Gaps = 8/133 (6%) Frame = +2 Query: 92 NYVVTAHKPTSVSHSCVGNFTGPH----QLNLIVAKCTRIEIHLLTPQGLQPMLDVPIYG 259 N + PT ++ +C GNF + + L + +H PQ + P++ + Sbjct: 135 NIAQNSSYPTGIAINCTGNFATTNGTLTKSGLFLTCSEHGTVHSYNPQ-VDPLVSFLVLN 193 Query: 260 RIAT--IELFRPHNEAQDFLFIATERYKFCVLQWDAEXSELLTRSM--GAVSDRIGXPYG 427 T I +FR A D L++A + ++ ++ +D+ + LL G SD I P Sbjct: 194 EQLTGEIHVFRGLAVAGDVLYLA-DFFQSKIMVFDSNYNRLLGFPFVDGDTSDPI--PIS 250 Query: 428 HGQIGIIDPDCRL 466 +G I++ C L Sbjct: 251 YGPTNIVNIGCYL 263
>TARA_HUMAN (Q9H2D6) TRIO and F-actin-binding protein (Protein Tara)| (Trio-associated repeat on actin) Length = 2365 Score = 30.0 bits (66), Expect = 3.1 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 2/48 (4%) Frame = -3 Query: 349 QDAELVPLRGNEEEVLGLIVRAEELDRRDPPIYGH--VQHRLEALRRE 212 Q+ E +PLR N+ L ++ +RR PP GH ++ ++ALR + Sbjct: 2031 QELEKLPLRENKRVPLTALLNQSRGERRGPPSDGHEALEKEVQALRAQ 2078
>YL61_SCHPO (Q8TFG9) Hypothetical serine/threonine-rich protein PB15E9.01c| precursor Length = 943 Score = 29.6 bits (65), Expect = 4.0 Identities = 25/75 (33%), Positives = 35/75 (46%) Frame = +3 Query: 243 TCPYMGGSRRSSSSALTMRPRTSSSLPRRGTSSASCSGTQXNQSFSLDPWELFLIASAXP 422 T Y + +SSS+LT SSSL TSS+S + + N + S P L +S+ Sbjct: 60 TTSYNYNTSSASSSSLTSSSAASSSL----TSSSSLASSSTNSTTSASPTSSSLTSSSA- 114 Query: 423 TDMDRLGSSTLTVDL 467 T SST + L Sbjct: 115 TSSSLASSSTTSSSL 129
>CPSF1_DROME (Q9V726) Cleavage and polyadenylation specificity factor, 160 kDa| subunit (CPSF 160 kDa subunit) (CPSF-160) (dCPSF) Length = 1455 Score = 29.3 bits (64), Expect = 5.2 Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 20/114 (17%) Frame = +2 Query: 110 HKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLTP-------QGLQP----------- 235 H T+V S F NL+VA ++++ + P Q L P Sbjct: 9 HSATAVEFSIACRFFNNLDENLVVAGANVLKVYRIAPNVEASQRQKLNPSEMRLAPKMRL 68 Query: 236 --MLDVPIYGRIATIELFRPHNEAQDFLFIATERYKFCVLQWDAEXSELLTRSM 391 + +YG + +++ +D L I+ + K VLQ D + L T S+ Sbjct: 69 ECLATYTLYGNVMSLQCVSLAGAMRDALLISFKDAKLSVLQHDPDTFALKTLSL 122
>SNX41_SCHPO (O60107) Sorting nexin-41| Length = 586 Score = 29.3 bits (64), Expect = 5.2 Identities = 14/43 (32%), Positives = 24/43 (55%) Frame = +3 Query: 249 PYMGGSRRSSSSALTMRPRTSSSLPRRGTSSASCSGTQXNQSF 377 P+ G RS+SSA+ + P+ S + +S + +Q N+SF Sbjct: 9 PFSGSDNRSASSAVNVEPKVEPSQHQGSSSVKENAISQPNESF 51
>CENG1_RAT (Q8CGU4) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,| ankyrin repeat and pleckstrin homology domains 2) (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE) Length = 1186 Score = 29.3 bits (64), Expect = 5.2 Identities = 15/34 (44%), Positives = 21/34 (61%) Frame = +3 Query: 246 CPYMGGSRRSSSSALTMRPRTSSSLPRRGTSSAS 347 CP GGS ++ SA T T++ PRR +S+AS Sbjct: 1142 CPGEGGSTATTPSAATTPSITATPSPRRRSSAAS 1175
>CENG1_MOUSE (Q3UHD9) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,| ankyrin repeat and pleckstrin homology domains 2) (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE) Length = 1186 Score = 29.3 bits (64), Expect = 5.2 Identities = 15/34 (44%), Positives = 21/34 (61%) Frame = +3 Query: 246 CPYMGGSRRSSSSALTMRPRTSSSLPRRGTSSAS 347 CP GGS ++ SA T T++ PRR +S+AS Sbjct: 1142 CPGEGGSTATTPSAATTPSITATPSPRRRSSAAS 1175
>CENG1_HUMAN (Q99490) Centaurin-gamma 1 (ARF-GAP with GTP-binding protein-like,| ankyrin repeat and pleckstrin homology domains 2) (AGAP-2) (Phosphatidylinositol-3-kinase enhancer) (PIKE) (GTP-binding and GTPase activating protein 2) (GGAP2) Length = 1192 Score = 29.3 bits (64), Expect = 5.2 Identities = 15/34 (44%), Positives = 21/34 (61%) Frame = +3 Query: 246 CPYMGGSRRSSSSALTMRPRTSSSLPRRGTSSAS 347 CP GGS ++ SA T T++ PRR +S+AS Sbjct: 1148 CPGEGGSAATTPSAATTPSITATPSPRRRSSAAS 1181
>PKHD1_HUMAN (Q8TCZ9) Polycystic kidney and hepatic disease 1 precursor| (Fibrocystin) (Polyductin) (Tigmin) Length = 4074 Score = 28.9 bits (63), Expect = 6.8 Identities = 15/43 (34%), Positives = 22/43 (51%) Frame = -3 Query: 358 VPLQDAELVPLRGNEEEVLGLIVRAEELDRRDPPIYGHVQHRL 230 +PL A VP G EE ++V + R PP+ GH + +L Sbjct: 754 LPLITARSVPTEGTEEGSGLVLVTTQRRQRTSPPLGGHFRIQL 796
>CLPB_CHLPN (Q7AJA9) Chaperone clpB| Length = 866 Score = 28.9 bits (63), Expect = 6.8 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 4/52 (7%) Frame = -3 Query: 334 VPLRGNEEEVLGLIVRAEELDRRDPPIYGH----VQHRLEALRREEVDLDAG 191 +P+ E E+ LIV+ E + R P Y +Q ++ALR E L G Sbjct: 409 LPIDEKERELAALIVKQEAIKREQSPSYQEEADAMQKSIDALREELASLRLG 460
>COQ3_MOUSE (Q8BMS4) Hexaprenyldihydroxybenzoate methyltransferase,| mitochondrial precursor (EC 2.1.1.114) (Dihydroxyhexaprenylbenzoate methyltransferase) (3,4-dihydroxy-5-hexaprenylbenzoate methyltransferase) (DHHB methyltransferase) (DHHB-MT) (DHHB-MTas Length = 370 Score = 28.9 bits (63), Expect = 6.8 Identities = 12/26 (46%), Positives = 17/26 (65%) Frame = +3 Query: 321 PRRGTSSASCSGTQXNQSFSLDPWEL 398 P R TS ++ SGTQ ++ + PWEL Sbjct: 29 PPRLTSRSAYSGTQLTRNLQIKPWEL 54
>CPSF1_HUMAN (Q10570) Cleavage and polyadenylation specificity factor, 160 kDa| subunit (CPSF 160 kDa subunit) Length = 1443 Score = 28.5 bits (62), Expect = 8.9 Identities = 22/113 (19%), Positives = 46/113 (40%), Gaps = 18/113 (15%) Frame = +2 Query: 107 AHKPTSVSHSCVGNFTGPHQLNLIVAKCTRIEIHLLT------------------PQGLQ 232 AH PT + S NF + NL+VA +++ ++ L + L+ Sbjct: 8 AHPPTGLEFSMYCNFFNNSERNLVVAGTSQLYVYRLNRDAEALTKNDRSTEGKAHREKLE 67 Query: 233 PMLDVPIYGRIATIELFRPHNEAQDFLFIATERYKFCVLQWDAEXSELLTRSM 391 +G + ++ + +D L ++ + K V+++D +L T S+ Sbjct: 68 LAASFSFFGNVMSMASVQLAGAKRDALLLSFKDAKLSVVEYDPGTHDLKTLSL 120 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 51,503,573 Number of Sequences: 219361 Number of extensions: 930163 Number of successful extensions: 3597 Number of sequences better than 10.0: 27 Number of HSP's better than 10.0 without gapping: 3319 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3525 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3014947676 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
