Clone Information

BLAST Search Result

Clone Name	bastl42e01
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	REL_HUMAN (Q04864) C-Rel proto-oncogene protein (C-Rel protein)	34	0.082
2	SGS4_DROME (Q00725) Salivary glue protein Sgs-4 precursor	32	0.41
3	RS14_RAT (P13471) 40S ribosomal protein S14	32	0.41
4	RS14_MOUSE (P62264) 40S ribosomal protein S14	32	0.41
5	RS14_HUMAN (P62263) 40S ribosomal protein S14	32	0.41
6	RS14_CRIGR (P62265) 40S ribosomal protein S14	32	0.41
7	HIS42_SILPO (Q5LR59) 1-(5-phosphoribosyl)-5-[(5-phosphoribosylam...	32	0.53
8	RS14_KLULA (P27069) 40S ribosomal protein S14 (RP59)	31	0.69
9	KGUA_ACIAD (Q6F7H0) Guanylate kinase (EC 2.7.4.8) (GMP kinase)	31	0.91
10	K0329_HUMAN (O15040) Protein KIAA0329/KIAA0297	31	0.91
11	RS14_CHLRE (P46295) 40S ribosomal protein S14	30	1.2
12	RS14A_YEAST (P06367) 40S ribosomal protein S14-A (RP59A)	30	1.5
13	RS14_PROCL (P48855) 40S ribosomal protein S14	30	1.5
14	RS14_PODCA (Q08699) 40S ribosomal protein S14	30	1.5
15	RS14B_YEAST (P39516) 40S ribosomal protein S14-B (RP59B)	30	1.5
16	RS14_CANAL (Q96W53) 40S ribosomal protein S14	30	2.0
17	RS14_CAEEL (P48150) 40S ribosomal protein S14	30	2.0
18	ATXR3_ARATH (O23372) Probable histone-lysine N-methyltransferase...	30	2.0
19	RS141_MAIZE (P19950) 40S ribosomal protein S14 (Clone MCH1)	30	2.0
20	RS143_ARATH (P42036) 40S ribosomal protein S14-3	30	2.0
21	RS142_MAIZE (P19951) 40S ribosomal protein S14 (Clone MCH2)	30	2.0
22	RS142_ARATH (Q9CAX6) 40S ribosomal protein S14-2	30	2.0
23	RS141_ARATH (Q9SIH0) 40S ribosomal protein S14-1	30	2.0
24	WOX4_ARATH (Q6X7J9) WUSCHEL-related homeobox 4	29	3.4
25	YM2A_CAEEL (P34447) Hypothetical protein F54F2.2, isoform a	29	3.4
26	RS14_NEUCR (P19115) 40S ribosomal protein S14 (CRP2)	29	3.4
27	RS14_DROME (P14130) 40S ribosomal protein S14	28	4.5
28	GALT9_MACFA (Q9GM01) Polypeptide N-acetylgalactosaminyltransfera...	28	4.5
29	DPOE_CRYNE (Q5K9M7) DNA polymerase epsilon, catalytic subunit A ...	28	4.5
30	TNR6B_HUMAN (O95407) Tumor necrosis factor receptor superfamily ...	28	4.5
31	TRAM4_ECOLI (Q00186) Protein traM	28	4.5
32	SYMPK_HUMAN (Q92797) Symplekin	28	5.9
33	RS11_PYRHO (P62011) 30S ribosomal protein S11P	28	5.9
34	RS11_PYRFU (Q8U0E3) 30S ribosomal protein S11P	28	5.9
35	RS11_PYRAB (P62010) 30S ribosomal protein S11P	28	5.9
36	MURG_CAUCR (Q9A5A1) UDP-N-acetylglucosamine--N-acetylmuramyl-(pe...	28	5.9
37	UBP2_YEAST (Q01476) Ubiquitin carboxyl-terminal hydrolase 2 (EC ...	28	7.7
38	SYE2_HELPY (O25360) GlutamylGlutaminyl-tRNA synthetase (EC 6.1.1...	28	7.7
39	SYE2_HELPJ (Q9ZLJ1) GlutamylGlutaminyl-tRNA synthetase (EC 6.1.1...	28	7.7
40	HORN_HUMAN (Q86YZ3) Hornerin	28	7.7
41	RS11_ARCFU (O28001) 30S ribosomal protein S11P	28	7.7
42	DHRS3_HUMAN (O75911) Short-chain dehydrogenase/reductase 3 (EC 1...	28	7.7
43	DHRS3_BOVIN (O77769) Short-chain dehydrogenase/reductase 3 (EC 1...	28	7.7
44	GCC7_CAEEL (Q21770) Germ cell expressed protein R06C7.1	23	9.1

>REL_HUMAN (Q04864) C-Rel proto-oncogene protein (C-Rel protein)|
          Length = 619

 Score = 34.3 bits (77), Expect = 0.082
 Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 4/44 (9%)
 Frame = +3

Query: 168 LPSSSWTSLAD*SPNSPQIPPLS----REIPNLAHGRRPWCRAP 287
           LPSSSW+S+A  +P S    PLS    R +P+ + G  P+ R P
Sbjct: 407 LPSSSWSSVAHPTPRSGNTNPLSSFSTRTLPSNSQGIPPFLRIP 450

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>SGS4_DROME (Q00725) Salivary glue protein Sgs-4 precursor|
          Length = 297

 Score = 32.0 bits (71), Expect = 0.41
 Identities = 22/78 (28%), Positives = 27/78 (34%)
 Frame = +3

Query: 72  DTHPPQVRWMPCCC*AQAFNCLARNCVPKYRRLPSSSWTSLAD*SPNSPQIPPLSREIPN 251
           +T PP+    P  C  +   C      PK    P +  T      P     PP  R  P 
Sbjct: 39  ETEPPRCETEPPRCETEPPRC--ETTTPKCETTPPTCRTE----PPTCKTEPPTCRTEPP 92

Query: 252 LAHGRRPWCRAPTPTCLT 305
               + P CR   PTC T
Sbjct: 93  TCKTKPPTCRTEPPTCRT 110



 Score = 29.6 bits (65), Expect = 2.0
 Identities = 22/77 (28%), Positives = 26/77 (33%)
 Frame = +3

Query: 75  THPPQVRWMPCCC*AQAFNCLARNCVPKYRRLPSSSWTSLAD*SPNSPQIPPLSREIPNL 254
           T PP  +  P  C  +   C  R   P  +  P +  T      P     PP  R  P  
Sbjct: 89  TEPPTCKTKPPTCRTEPPTC--RTEPPTCKTKPPTCKTE----PPTCKTEPPTCRTEPPT 142

Query: 255 AHGRRPWCRAPTPTCLT 305
                P CR   PTC T
Sbjct: 143 CKTEPPTCRTEPPTCKT 159



 Score = 28.1 bits (61), Expect = 5.9
 Identities = 21/77 (27%), Positives = 26/77 (33%)
 Frame = +3

Query: 75  THPPQVRWMPCCC*AQAFNCLARNCVPKYRRLPSSSWTSLAD*SPNSPQIPPLSREIPNL 254
           T PP+    P  C  +   C      P+    P    T+    +P     PP  R  P  
Sbjct: 26  TEPPRCETEPPRCETEPPRCETEP--PRCETEPPRCETT----TPKCETTPPTCRTEPPT 79

Query: 255 AHGRRPWCRAPTPTCLT 305
                P CR   PTC T
Sbjct: 80  CKTEPPTCRTEPPTCKT 96

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>RS14_RAT (P13471) 40S ribosomal protein S14|
          Length = 150

 Score = 32.0 bits (71), Expect = 0.41
 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = -3

Query: 296 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 171
           G +R+ TP P   S +R  AR G  +GRI       S S R  GGRR
Sbjct: 100 GGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRR 146

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>RS14_MOUSE (P62264) 40S ribosomal protein S14|
          Length = 150

 Score = 32.0 bits (71), Expect = 0.41
 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = -3

Query: 296 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 171
           G +R+ TP P   S +R  AR G  +GRI       S S R  GGRR
Sbjct: 100 GGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRR 146

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>RS14_HUMAN (P62263) 40S ribosomal protein S14|
          Length = 150

 Score = 32.0 bits (71), Expect = 0.41
 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = -3

Query: 296 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 171
           G +R+ TP P   S +R  AR G  +GRI       S S R  GGRR
Sbjct: 100 GGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRR 146

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>RS14_CRIGR (P62265) 40S ribosomal protein S14|
          Length = 150

 Score = 32.0 bits (71), Expect = 0.41
 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = -3

Query: 296 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 171
           G +R+ TP P   S +R  AR G  +GRI       S S R  GGRR
Sbjct: 100 GGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDSTRRKGGRR 146

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>HIS42_SILPO (Q5LR59) 1-(5-phosphoribosyl)-5-[(5-|
           phosphoribosylamino)methylideneamino]
           imidazole-4-carboxamide isomerase 2 (EC 5.3.1.16)
           (Phosphoribosylformimino-5-aminoimidazole carboxamide
           ribotide isomerase 2)
          Length = 247

 Score = 31.6 bits (70), Expect = 0.53
 Identities = 16/33 (48%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -3

Query: 179 GRREAPIFWHTVPGETVEGLGSAATR--HPPDL 87
           GR +AP+ WH  P ETV G  SA     H  DL
Sbjct: 20  GRLDAPMLWHVDPFETVSGWASAGAEWMHLTDL 52

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>RS14_KLULA (P27069) 40S ribosomal protein S14 (RP59)|
          Length = 137

 Score = 31.2 bits (69), Expect = 0.69
 Identities = 20/47 (42%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = -3

Query: 296 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 171
           G +RS TP P   + +R  AR G  +GRI       S S R  GGRR
Sbjct: 87  GGTRSKTPGPGGQAALRALARSGLRIGRIEDVTPVPSDSTRKKGGRR 133

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>KGUA_ACIAD (Q6F7H0) Guanylate kinase (EC 2.7.4.8) (GMP kinase)|
          Length = 207

 Score = 30.8 bits (68), Expect = 0.91
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = -2

Query: 264 SREQDSGFREKGEGFGENWGFNQRAKSRRKKGGADILAHSSWR 136
           S+ +D+GF E  E FG  +G +Q    ++   G D+L    W+
Sbjct: 61  SQVEDNGFIEYAEVFGNYYGTSQATVKQQLAKGHDVLLEIDWQ 103

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>K0329_HUMAN (O15040) Protein KIAA0329/KIAA0297|
          Length = 1411

 Score = 30.8 bits (68), Expect = 0.91
 Identities = 29/103 (28%), Positives = 50/103 (48%), Gaps = 5/103 (4%)
 Frame = +1

Query: 4   RVGLGLLG*AQRERERETD-----AVSKTHTHPRSGGCLVAAEPRPSTVSPGTVCQNIGA 168
           R GL + G ++R   ++ +      VS+T     S    VA+EPR  + S  +   + G+
Sbjct: 363 RDGLEMSGCSERVHVQQAEKLPGATVSETRLRGSSMASSVASEPRSRSSSLNST--DSGS 420

Query: 169 SLLPPGLRSLIEAPILPKSLPFLAKSRILLTGGGHGVELLLQP 297
            LLPPGL++    P L K    L++    ++      EL+++P
Sbjct: 421 GLLPPGLQA---TPELGKGSQPLSQRFNAISSEDFDQELVVKP 460

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>RS14_CHLRE (P46295) 40S ribosomal protein S14|
          Length = 153

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = -3

Query: 296 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 171
           G +R+ TP P   S +R  AR G  +GRI       + S R  GGRR
Sbjct: 103 GGNRTKTPGPGAQSALRALARAGMKIGRIEDVTPIPTDSTRRKGGRR 149

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>RS14A_YEAST (P06367) 40S ribosomal protein S14-A (RP59A)|
          Length = 136

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = -3

Query: 296 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 171
           G +R+ TP P   + +R  AR G  +GRI       S S R  GGRR
Sbjct: 86  GGTRTKTPGPGGQAALRALARSGLRIGRIEDVTPVPSDSTRKKGGRR 132

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>RS14_PROCL (P48855) 40S ribosomal protein S14|
          Length = 151

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = -3

Query: 296 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 171
           G +++ TP P   S +R  AR G  +GRI       S S R  GGRR
Sbjct: 101 GGNKTKTPGPGGQSALRALARAGMKIGRIEDVTPVPSDSTRRKGGRR 147

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>RS14_PODCA (Q08699) 40S ribosomal protein S14|
          Length = 151

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
 Frame = -3

Query: 296 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 171
           G +R+ TP P   S +R  AR G  +GRI       S   R  GGRR
Sbjct: 101 GGNRTKTPGPGAQSALRALARSGMKIGRIEDVTPIPSDCTRRKGGRR 147

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>RS14B_YEAST (P39516) 40S ribosomal protein S14-B (RP59B)|
          Length = 137

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = -3

Query: 296 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 171
           G +R+ TP P   + +R  AR G  +GRI       S S R  GGRR
Sbjct: 87  GGTRTKTPGPGGQAALRALARSGLRIGRIEDVTPVPSDSTRKKGGRR 133

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>RS14_CANAL (Q96W53) 40S ribosomal protein S14|
          Length = 134

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 19/47 (40%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = -3

Query: 296 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 171
           G +++ TP P   S +R  AR G  +GRI       S S R  GGRR
Sbjct: 84  GGTKTKTPGPGGQSALRALARSGLRIGRIEDVTPVPSDSTRRKGGRR 130

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>RS14_CAEEL (P48150) 40S ribosomal protein S14|
          Length = 152

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
 Frame = -3

Query: 296 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 171
           G +R+ TP P   S +R  AR G  +GRI       S   R  GGRR
Sbjct: 102 GGTRTKTPGPGAQSALRALARAGMKIGRIEDVTPIPSDCTRRKGGRR 148

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>ATXR3_ARATH (O23372) Probable histone-lysine N-methyltransferase ATXR3 (EC|
           2.1.1.43) (Trithorax-related protein 3) (TRX-related
           protein 3) (Protein SET DOMAIN GROUP 2)
          Length = 2351

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 15/36 (41%), Positives = 21/36 (58%), Gaps = 1/36 (2%)
 Frame = -2

Query: 237 EKGEGFGENWGFNQRAKSRRK-KGGADILAHSSWRD 133
           EKGE  GE+W  ++  K+ +  KGG +     SWRD
Sbjct: 174 EKGEIVGESWKKDEPTKADKNWKGGKEEREFRSWRD 209

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>RS141_MAIZE (P19950) 40S ribosomal protein S14 (Clone MCH1)|
          Length = 149

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = -3

Query: 296 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 171
           G +++ TP P   S +R  AR G  +GRI       + S R  GGRR
Sbjct: 99  GGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPVPTDSTRRKGGRR 145

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>RS143_ARATH (P42036) 40S ribosomal protein S14-3|
          Length = 150

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = -3

Query: 296 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 171
           G +++ TP P   S +R  AR G  +GRI       + S R  GGRR
Sbjct: 100 GGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRR 146

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>RS142_MAIZE (P19951) 40S ribosomal protein S14 (Clone MCH2)|
          Length = 150

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = -3

Query: 296 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 171
           G +++ TP P   S +R  AR G  +GRI       + S R  GGRR
Sbjct: 100 GGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPVPTDSTRRKGGRR 146

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>RS142_ARATH (Q9CAX6) 40S ribosomal protein S14-2|
          Length = 150

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = -3

Query: 296 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 171
           G +++ TP P   S +R  AR G  +GRI       + S R  GGRR
Sbjct: 100 GGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRR 146

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>RS141_ARATH (Q9SIH0) 40S ribosomal protein S14-1|
          Length = 150

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = -3

Query: 296 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 171
           G +++ TP P   S +R  AR G  +GRI       + S R  GGRR
Sbjct: 100 GGNKTKTPGPGAQSALRALARSGMKIGRIEDVTPIPTDSTRRKGGRR 146

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>WOX4_ARATH (Q6X7J9) WUSCHEL-related homeobox 4|
          Length = 251

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 15/32 (46%), Positives = 18/32 (56%)
 Frame = +3

Query: 9   RPWPTGVSTKRERERDGRSEQDTHPPQVRWMP 104
           RP  TG  TK E +RD   + +THP   RW P
Sbjct: 63  RPDQTG-PTKFEHKRDPPHQLETHPGGTRWNP 93

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>YM2A_CAEEL (P34447) Hypothetical protein F54F2.2, isoform a|
          Length = 867

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 23/78 (29%), Positives = 38/78 (48%), Gaps = 4/78 (5%)
 Frame = +1

Query: 31  AQRERERETDAVSKTHTHPRSGGCLVAAEPRPSTV----SPGTVCQNIGASLLPPGLRSL 198
           A+R R+ + D + KTH  PR       A  RP  V    S G+    +G S     L++L
Sbjct: 433 AKRIRDSKNDMMDKTHKRPR-------ANARPPAVLGSMSSGSSGGTVGKSPSMQRLQNL 485

Query: 199 IEAPILPKSLPFLAKSRI 252
           + API+ +++    + R+
Sbjct: 486 V-APIVSETVTDFQRDRV 502

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>RS14_NEUCR (P19115) 40S ribosomal protein S14 (CRP2)|
          Length = 150

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
 Frame = -3

Query: 296 GWSRSSTPWPPPVSKIRDFARKGRDLGRI-----GASISERSPGGRR 171
           G + + TP P   S +R  AR G  +GRI       S S R  GGRR
Sbjct: 100 GGNGTRTPGPGAQSALRALARSGMKIGRIEDVTPTPSDSTRRKGGRR 146

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>RS14_DROME (P14130) 40S ribosomal protein S14|
          Length = 151

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 18/47 (38%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
 Frame = -3

Query: 296 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 171
           G +++ TP P   S +R  AR    +GRI       S S R  GGRR
Sbjct: 101 GGNKTKTPGPGAQSALRALARSSMKIGRIEDVTPIPSDSTRRKGGRR 147

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>GALT9_MACFA (Q9GM01) Polypeptide N-acetylgalactosaminyltransferase 9 (EC|
           2.4.1.41) (Protein-UDP acetylgalactosaminyltransferase
           9) (UDP-GalNAc:polypeptide
           N-acetylgalactosaminyltransferase 9) (Polypeptide GalNAc
           transferase 9) (GalNAc-T9) (pp-GaNTase 9)
          Length = 606

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = +1

Query: 67  SKTHTHPRSGGCLVAAEPRPSTVSPGTVCQNIGASLLPPGLRSLIEAPILP 219
           S+    P SGGC     PRP+T +PG+  ++ G   +  G   L+    LP
Sbjct: 34  SQELVRPLSGGC----RPRPATPAPGSPLRSGGPRAVVAGRAELVLKGQLP 80

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>DPOE_CRYNE (Q5K9M7) DNA polymerase epsilon, catalytic subunit A (EC 2.7.7.7)|
           (DNA polymerase II subunit A)
          Length = 2250

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = -2

Query: 243 FREKGEGFGENWGFNQRAKSRRK-KGGADILAHSSWRDS*RPGLSSNKAS 97
           FR +G G G  +G N R   RR+ +GG       ++    RP  S+N+A+
Sbjct: 7   FRGRGRGSGSGFGSNTRFTGRRRGRGGGGGGGGVAYGIDRRPATSTNQAN 56

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>TNR6B_HUMAN (O95407) Tumor necrosis factor receptor superfamily member 6B|
           precursor (Decoy receptor for Fas ligand) (Decoy
           receptor 3) (DcR3) (M68)
          Length = 300

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 20/60 (33%), Positives = 23/60 (38%), Gaps = 11/60 (18%)
 Frame = +1

Query: 40  ERERETDAVSKTHTHP---------RSGGCLVAAE--PRPSTVSPGTVCQNIGASLLPPG 186
           ERE E  A   TH             +G CL  A   P    ++PGT  QN      PPG
Sbjct: 97  EREEEARACHATHNRACRCRTGFFAHAGFCLEHASCPPGAGVIAPGTPSQNTQCQPCPPG 156

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>TRAM4_ECOLI (Q00186) Protein traM|
          Length = 144

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 279 DTMASSREQDSGFREKGEGFGENWGFNQRAKSRRKKGGA 163
           D+ A   E  + F+E+ EG    WG + +AK+ R    A
Sbjct: 38  DSAAKQEEILAAFKEELEGIAHRWGEDAKAKAERMLNAA 76

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>SYMPK_HUMAN (Q92797) Symplekin|
          Length = 1274

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 16/51 (31%), Positives = 23/51 (45%)
 Frame = -3

Query: 290  SRSSTPWPPPVSKIRDFARKGRDLGRIGASISERSPGGRREAPIFWHTVPG 138
            S S+ P PPP  +  DF  +G +    G  IS     G  EA +   ++ G
Sbjct: 1175 SPSARPGPPPSEEAMDFREEGPECETPGIFISMDDDSGLTEAALLDSSLEG 1225

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>RS11_PYRHO (P62011) 30S ribosomal protein S11P|
          Length = 137

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
 Frame = -3

Query: 296 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 171
           G S+S TP P   + IR  AR G  +GR+           R  GGRR
Sbjct: 87  GGSKSKTPGPGAQAAIRALARAGLKIGRVEDVTPIPHDGTRPKGGRR 133

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>RS11_PYRFU (Q8U0E3) 30S ribosomal protein S11P|
          Length = 137

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
 Frame = -3

Query: 296 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 171
           G S+S TP P   + IR  AR G  +GR+           R  GGRR
Sbjct: 87  GGSKSKTPGPGAQAAIRALARAGLKIGRVEDVTPIPHDGTRPKGGRR 133

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>RS11_PYRAB (P62010) 30S ribosomal protein S11P|
          Length = 137

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 18/47 (38%), Positives = 22/47 (46%), Gaps = 5/47 (10%)
 Frame = -3

Query: 296 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 171
           G S+S TP P   + IR  AR G  +GR+           R  GGRR
Sbjct: 87  GGSKSKTPGPGAQAAIRALARAGLKIGRVEDVTPIPHDGTRPKGGRR 133

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>MURG_CAUCR (Q9A5A1) UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)|
           pyrophosphoryl-undecaprenol N-acetylglucosamine
           transferase (EC 2.4.1.227)
           (Undecaprenyl-PP-MurNAc-pentapeptide-UDPGlcNAc GlcNAc
           transferase)
          Length = 361

 Score = 28.1 bits (61), Expect = 5.9
 Identities = 14/46 (30%), Positives = 24/46 (52%)
 Frame = +1

Query: 151 CQNIGASLLPPGLRSLIEAPILPKSLPFLAKSRILLTGGGHGVELL 288
           C ++  + + P +R+L + P L   +      R+L+TGG  G  LL
Sbjct: 157 CAHVVGNPVRPPVRALFDVPYLAPEVQL----RVLVTGGSQGARLL 198

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>UBP2_YEAST (Q01476) Ubiquitin carboxyl-terminal hydrolase 2 (EC 3.1.2.15)|
            (Ubiquitin thioesterase 2) (Ubiquitin-specific-processing
            protease 2) (Deubiquitinating enzyme 2)
          Length = 1272

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 12/22 (54%), Positives = 15/22 (68%)
 Frame = -1

Query: 238  RERGGIWGELGLQSASEVQEEE 173
            R R GIW +   ++ SEVQEEE
Sbjct: 1217 RNRNGIWRKYNDETISEVQEEE 1238

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>SYE2_HELPY (O25360) GlutamylGlutaminyl-tRNA synthetase (EC 6.1.1.-) (GluGlnRS)|
           (Glutamyl-tRNA synthetase 2) (Glutamate--tRNA ligase 2)
           (GluRS 2)
          Length = 439

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 14/24 (58%), Positives = 14/24 (58%)
 Frame = +1

Query: 220 KSLPFLAKSRILLTGGGHGVELLL 291
           K   F    RILLTG  HGVEL L
Sbjct: 399 KGKDFFKPLRILLTGNSHGVELPL 422

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>SYE2_HELPJ (Q9ZLJ1) GlutamylGlutaminyl-tRNA synthetase (EC 6.1.1.-) (GluGlnRS)|
           (Glutamyl-tRNA synthetase 2) (Glutamate--tRNA ligase 2)
           (GluRS 2)
          Length = 439

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 14/24 (58%), Positives = 14/24 (58%)
 Frame = +1

Query: 220 KSLPFLAKSRILLTGGGHGVELLL 291
           K   F    RILLTG  HGVEL L
Sbjct: 399 KGKDFFKPLRILLTGNSHGVELPL 422

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>HORN_HUMAN (Q86YZ3) Hornerin|
          Length = 2850

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 19/63 (30%), Positives = 27/63 (42%)
 Frame = -2

Query: 267  SSREQDSGFREKGEGFGENWGFNQRAKSRRKKGGADILAHSSWRDS*RPGLSSNKAST*P 88
            S   Q SG+  +G G G++ G  QR    R+       + S  R     G SS+     P
Sbjct: 2047 SGSSQSSGYGRQGSGSGQSPGHGQRGSGSRQ-------SPSYGRHGSGSGRSSSSGQHGP 2099

Query: 87   GVG 79
            G+G
Sbjct: 2100 GLG 2102

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>RS11_ARCFU (O28001) 30S ribosomal protein S11P|
          Length = 133

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 17/47 (36%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
 Frame = -3

Query: 296 GWSRSSTPWPPPVSKIRDFARKGRDLGRIG-----ASISERSPGGRR 171
           G ++ +TP P   + IR  AR G  +GRI           R PGG+R
Sbjct: 83  GGNKHTTPGPGAQAAIRALARAGLKIGRIEDVTPIPHDGTRPPGGKR 129

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>DHRS3_HUMAN (O75911) Short-chain dehydrogenase/reductase 3 (EC 1.1.-.-)|
           (Retinal short-chain dehydrogenase/reductase 1)
           (retSDR1) (DD83.1)
          Length = 302

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 211 ILPKSLPFLAKSRILLTGGGHGV 279
           +LP  L  L++  +L+TGGG G+
Sbjct: 28  VLPAKLRDLSRENVLITGGGRGI 50

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>DHRS3_BOVIN (O77769) Short-chain dehydrogenase/reductase 3 (EC 1.1.-.-)|
           (Retinal short-chain dehydrogenase/reductase 1)
           (retSDR1)
          Length = 302

 Score = 27.7 bits (60), Expect = 7.7
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = +1

Query: 211 ILPKSLPFLAKSRILLTGGGHGV 279
           +LP  L  L++  +L+TGGG G+
Sbjct: 28  VLPAKLRDLSRENVLITGGGRGI 50

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>GCC7_CAEEL (Q21770) Germ cell expressed protein R06C7.1|
          Length = 945

 Score = 23.1 bits (48), Expect(2) = 9.1
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 281 STPWPPPVSKIRDFARKGRDL 219
           ST  P P+    ++A++GRDL
Sbjct: 884 STSIPTPLYVANEYAKRGRDL 904



 Score = 22.7 bits (47), Expect(2) = 9.1
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = -1

Query: 223 IWGELGLQSASEVQEEEGRR 164
           +WGEL  +   E +E +G R
Sbjct: 904 LWGELTTKGPIEAKESQGER 923


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 49,273,238
Number of Sequences: 219361
Number of extensions: 1048983
Number of successful extensions: 3900
Number of sequences better than 10.0: 44
Number of HSP's better than 10.0 without gapping: 3720
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3886
length of database: 80,573,946
effective HSP length: 77
effective length of database: 63,683,149
effective search space used: 1528395576
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result