ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl42d12 |
|---|---|
| Clone Library Name | barley_pub |
>SYR_DROME (Q9VXN4) Probable arginyl-tRNA synthetase (EC 6.1.1.19)| (Arginine--tRNA ligase) (ArgRS) Length = 665 Score = 44.7 bits (104), Expect = 9e-05 Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 4/102 (3%) Frame = +1 Query: 130 ETSTSASGSAQEPAAPAVQGAGSVKQQISNL----VALSLHATXXXXXXXXXXXXCTGKF 297 E ST+A G +P + + S+ + + ++ +A + + KF Sbjct: 61 EESTAAGGDVSKP-----KESSSITEHLESVFRQAIASAFPEFRDTPVIIAPVNSTSAKF 115 Query: 298 GDYQCNNAMGLWSKVKGSGTSFKNPNAIGQSIAKNLPACDVI 423 GDYQCNNAMGL K+K G + K P I + + PA +I Sbjct: 116 GDYQCNNAMGLSKKLKEKGIN-KAPRDIATELKGHCPASPII 156
>SYR_CRILO (P37880) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA| ligase) (ArgRS) Length = 661 Score = 41.2 bits (95), Expect = 0.001 Identities = 19/39 (48%), Positives = 25/39 (64%) Frame = +1 Query: 292 KFGDYQCNNAMGLWSKVKGSGTSFKNPNAIGQSIAKNLP 408 KFGDYQCN+AMG+ +K NP I ++I K+LP Sbjct: 110 KFGDYQCNSAMGISQMLKAKEQKV-NPRGIAENITKHLP 147
>SYR_HUMAN (P54136) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA| ligase) (ArgRS) Length = 660 Score = 40.0 bits (92), Expect = 0.002 Identities = 19/39 (48%), Positives = 25/39 (64%) Frame = +1 Query: 292 KFGDYQCNNAMGLWSKVKGSGTSFKNPNAIGQSIAKNLP 408 KFGDYQCN+AMG+ +K NP I ++I K+LP Sbjct: 109 KFGDYQCNSAMGISQMLKTKEQKV-NPREIAENITKHLP 146
>SYR_MOUSE (Q9D0I9) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA| ligase) (ArgRS) Length = 660 Score = 38.9 bits (89), Expect = 0.005 Identities = 18/39 (46%), Positives = 25/39 (64%) Frame = +1 Query: 292 KFGDYQCNNAMGLWSKVKGSGTSFKNPNAIGQSIAKNLP 408 KFGDYQCN+AMG+ +K +P I ++I K+LP Sbjct: 109 KFGDYQCNSAMGISQMLKAKEQKV-SPREIAENITKHLP 146
>SYR_CAEEL (Q19825) Probable arginyl-tRNA synthetase (EC 6.1.1.19)| (Arginine--tRNA ligase) (ArgRS) Length = 713 Score = 35.0 bits (79), Expect = 0.074 Identities = 16/39 (41%), Positives = 25/39 (64%) Frame = +1 Query: 292 KFGDYQCNNAMGLWSKVKGSGTSFKNPNAIGQSIAKNLP 408 +FGDYQCN+AM + +K+K + + K P + + I LP Sbjct: 161 QFGDYQCNSAMPIAAKLKANKIN-KRPGDVAKEIQAKLP 198
>SYR_FUSNN (Q8RG14) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA| ligase) (ArgRS) Length = 569 Score = 34.7 bits (78), Expect = 0.096 Identities = 20/43 (46%), Positives = 24/43 (55%) Frame = +1 Query: 295 FGDYQCNNAMGLWSKVKGSGTSFKNPNAIGQSIAKNLPACDVI 423 FGDYQCN AM + SK+ G NP I + + N P DVI Sbjct: 38 FGDYQCNFAM-INSKIIGD-----NPRKIAEEVKNNFPYGDVI 74
>SYR_CHLMU (Q9PJT8) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA| ligase) (ArgRS) Length = 563 Score = 32.0 bits (71), Expect = 0.62 Identities = 16/39 (41%), Positives = 23/39 (58%) Frame = +1 Query: 295 FGDYQCNNAMGLWSKVKGSGTSFKNPNAIGQSIAKNLPA 411 FG YQCN+AM L ++ K+P AI + I ++PA Sbjct: 38 FGHYQCNDAMKLARALR------KSPRAIAEEIVAHIPA 70
>SYR_CHLTR (O84460) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA| ligase) (ArgRS) Length = 563 Score = 31.2 bits (69), Expect = 1.1 Identities = 16/38 (42%), Positives = 22/38 (57%) Frame = +1 Query: 295 FGDYQCNNAMGLWSKVKGSGTSFKNPNAIGQSIAKNLP 408 FG YQCN+AM L + K+P AI +SI ++P Sbjct: 38 FGHYQCNDAMKL------ARVLHKSPRAIAESIVAHIP 69
>SYR_CHLPN (Q9Z7Y3) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA| ligase) (ArgRS) Length = 561 Score = 30.8 bits (68), Expect = 1.4 Identities = 17/38 (44%), Positives = 21/38 (55%) Frame = +1 Query: 295 FGDYQCNNAMGLWSKVKGSGTSFKNPNAIGQSIAKNLP 408 FG YQCN+AM L +K K P AI ++I LP Sbjct: 38 FGHYQCNDAMKLARVLK------KAPRAIAEAIVAELP 69
>Y579_CHLTR (O84583) Protein CT_579| Length = 439 Score = 30.4 bits (67), Expect = 1.8 Identities = 22/87 (25%), Positives = 37/87 (42%), Gaps = 4/87 (4%) Frame = +1 Query: 52 SLGHCRASPFTRLPRSACYASTTMGDETSTSA----SGSAQEPAAPAVQGAGSVKQQISN 219 SLG +++ FT SA ++T+ +T+TSA +G+A A A GA S + Sbjct: 225 SLGGLKSAAFTNETASATTSATSSLAKTATSALDDVAGTATAVGAKATSGAASAASSAAT 284 Query: 220 LVALSLHATXXXXXXXXXXXXCTGKFG 300 + ++ + G FG Sbjct: 285 KLTQNMAESASKTLSQTASKSAGGLFG 311
>SYR_HAEDU (Q7VP38) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA| ligase) (ArgRS) Length = 561 Score = 30.0 bits (66), Expect = 2.4 Identities = 16/44 (36%), Positives = 20/44 (45%) Frame = +1 Query: 292 KFGDYQCNNAMGLWSKVKGSGTSFKNPNAIGQSIAKNLPACDVI 423 +FGDYQ N AM K+ NP Q I NL D++ Sbjct: 21 EFGDYQANGAMAAAKKLA------MNPREFAQKILDNLDVSDMV 58
>PRY3_YEAST (P47033) Protein PRY3 (Pathogen related in Sc 3)| Length = 881 Score = 29.6 bits (65), Expect = 3.1 Identities = 25/112 (22%), Positives = 50/112 (44%), Gaps = 5/112 (4%) Frame = +1 Query: 100 ACYASTTMGDETSTSASGSAQEPA--APAVQGAGSVKQQISNLVALSLHATXXXXXXXXX 273 A +STT D TS++A+ S+ +PA + A + S + S+ A+S ++ Sbjct: 278 ATSSSTTSSDPTSSTAAASSSDPASSSAAASSSASTENAASSSSAISSSSSMVSAPLSST 337 Query: 274 XXXCTGKFGDYQCNNAMGLWSKVKGSGT---SFKNPNAIGQSIAKNLPACDV 420 T N+ + VK + T S + +++ S++ ++ A D+ Sbjct: 338 LTTSTASSRSVTSNSV----NSVKFANTTVFSAQTTSSVSASLSSSVAADDI 385
>PP14C_MOUSE (Q8R4S0) Protein phosphatase 1 regulatory subunit 14C| (PKC-potentiated PP1 inhibitory protein) (Kinase-enhanced PP1 inhibitor) Length = 164 Score = 29.6 bits (65), Expect = 3.1 Identities = 23/63 (36%), Positives = 31/63 (49%), Gaps = 2/63 (3%) Frame = +1 Query: 28 SGGAYPRDSLGHCRASPFTRLPRSACYASTTMGDETSTSASGSAQEPAAP--AVQGAGSV 201 +GG G A F + PR T G S+S+SGS++E +AP V AG V Sbjct: 5 TGGGEAAGGGGGGGARVFFQSPRGG-----TGGSPGSSSSSGSSREDSAPVTTVAAAGQV 59 Query: 202 KQQ 210 +QQ Sbjct: 60 QQQ 62
>SYR_CHLCV (Q824H4) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA| ligase) (ArgRS) Length = 564 Score = 29.3 bits (64), Expect = 4.0 Identities = 15/38 (39%), Positives = 22/38 (57%) Frame = +1 Query: 295 FGDYQCNNAMGLWSKVKGSGTSFKNPNAIGQSIAKNLP 408 FG YQCN+AM L +K + P AI ++I ++P Sbjct: 39 FGHYQCNDAMKLARTLKMA------PRAIAEAIVNHIP 70
>FOLC_HUMAN (Q05932) Folylpolyglutamate synthase, mitochondrial precursor (EC| 6.3.2.17) (Folylpoly-gamma-glutamate synthetase) (FPGS) (Tetrahydrofolate synthase) (Tetrahydrofolylpolyglutamate synthase) Length = 587 Score = 29.3 bits (64), Expect = 4.0 Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 3/45 (6%) Frame = -2 Query: 343 LLLTTIPLHCCTGSHQIFPCKLQLSVLHPLQALSHG---VTEPPS 218 LLL P H C+ S +F C + H LQ +S G + +PPS Sbjct: 500 LLLAPHPPHTCSASSLVFSC-----ISHALQWISQGRDPIFQPPS 539
>SYR_SYNP7 (Q8KPU9) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA| ligase) (ArgRS) Length = 584 Score = 29.3 bits (64), Expect = 4.0 Identities = 16/43 (37%), Positives = 24/43 (55%) Frame = +1 Query: 292 KFGDYQCNNAMGLWSKVKGSGTSFKNPNAIGQSIAKNLPACDV 420 KFGDYQ N AM L ++ + P AI +++ +NL D+ Sbjct: 38 KFGDYQSNVAMSLAKQLG------QPPRAIAETLVQNLNLADL 74
>PP14C_RAT (Q8R4R9) Protein phosphatase 1 regulatory subunit 14C| (PKC-potentiated PP1 inhibitory protein) (Kinase-enhanced PP1 inhibitor) Length = 164 Score = 28.5 bits (62), Expect = 6.9 Identities = 24/70 (34%), Positives = 33/70 (47%), Gaps = 2/70 (2%) Frame = +1 Query: 7 GRSSNCSSGGAYPRDSLGHCRASPFTRLPRSACYASTTMGDETSTSASGSAQEPAAP--A 180 G ++ +SGG A F + PR T G S+S SGS++E +AP Sbjct: 8 GEAAGGTSGGG----------ARVFFQSPRGG-----TGGSRESSSHSGSSREDSAPVAT 52 Query: 181 VQGAGSVKQQ 210 V AG V+QQ Sbjct: 53 VAAAGQVQQQ 62
>IAAD_HORVU (P11643) Alpha-amylase/trypsin inhibitor CMd precursor| (Chloroform/methanol-soluble protein CMd) Length = 171 Score = 28.5 bits (62), Expect = 6.9 Identities = 10/19 (52%), Positives = 15/19 (78%) Frame = +1 Query: 13 SSNCSSGGAYPRDSLGHCR 69 +++CS G A+P + LGHCR Sbjct: 29 ATDCSPGVAFPTNLLGHCR 47
>T22D1_CHICK (Q91012) TSC22 domain family protein 1 (Transforming growth factor| beta-1-induced transcript 4 protein) (Regulatory protein TSC-22) (TGFB-stimulated clone 22 homolog) Length = 144 Score = 28.5 bits (62), Expect = 6.9 Identities = 12/21 (57%), Positives = 16/21 (76%) Frame = +1 Query: 133 TSTSASGSAQEPAAPAVQGAG 195 +S A G+AQ+PA PA QG+G Sbjct: 121 SSGQAQGTAQQPAQPASQGSG 141
>SYR_ANASP (Q8YQU9) Arginyl-tRNA synthetase (EC 6.1.1.19) (Arginine--tRNA| ligase) (ArgRS) Length = 588 Score = 28.1 bits (61), Expect = 9.0 Identities = 15/43 (34%), Positives = 22/43 (51%) Frame = +1 Query: 292 KFGDYQCNNAMGLWSKVKGSGTSFKNPNAIGQSIAKNLPACDV 420 KFGDYQ N A+ L K+ + P AI +I + L ++ Sbjct: 38 KFGDYQANVALSLSKKLG------QQPRAIASAIVEKLDVSEI 74
>RPB1_DROME (P04052) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)| Length = 1887 Score = 28.1 bits (61), Expect = 9.0 Identities = 21/54 (38%), Positives = 23/54 (42%), Gaps = 3/54 (5%) Frame = +1 Query: 25 SSGGAYPRDSLGHCRASPFTRLPRSACYASTTMG---DETSTSASGSAQEPAAP 177 S GGA P S SP + L S YASTT T S S S P +P Sbjct: 1590 SPGGASPNYSPSSPNYSPTSPLYASPRYASTTPNFNPQSTGYSPSSSGYSPTSP 1643
>DCC_MOUSE (P70211) Netrin receptor DCC precursor (Tumor suppressor protein DCC)| Length = 1447 Score = 28.1 bits (61), Expect = 9.0 Identities = 13/38 (34%), Positives = 23/38 (60%) Frame = -2 Query: 262 HPLQALSHGVTEPPSWRSAA*HSRLPARPVLQVPGPSL 149 HPL++ ++ + PP +A ++P P+L PGP+L Sbjct: 1340 HPLRSFANPLLPPPM---SAIEPKVPYTPLLSQPGPTL 1374
>DCC_HUMAN (P43146) Netrin receptor DCC precursor (Tumor suppressor protein DCC)| (Colorectal cancer suppressor) Length = 1447 Score = 28.1 bits (61), Expect = 9.0 Identities = 13/38 (34%), Positives = 23/38 (60%) Frame = -2 Query: 262 HPLQALSHGVTEPPSWRSAA*HSRLPARPVLQVPGPSL 149 HPL++ ++ + PP +A ++P P+L PGP+L Sbjct: 1340 HPLRSFANPLLPPPM---SAIEPKVPYTPLLSQPGPTL 1374 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.312 0.126 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 59,642,384 Number of Sequences: 219361 Number of extensions: 1193455 Number of successful extensions: 2667 Number of sequences better than 10.0: 23 Number of HSP's better than 10.0 without gapping: 2587 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2665 length of database: 80,573,946 effective HSP length: 101 effective length of database: 58,418,485 effective search space used: 2336739400 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.9 bits)
