Clone Name | bastl42d08 |
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Clone Library Name | barley_pub |
>CN104_MOUSE (Q8BPI1) Protein C14orf104 homolog| Length = 328 Score = 30.8 bits (68), Expect = 1.7 Identities = 20/69 (28%), Positives = 28/69 (40%) Frame = -3 Query: 385 GNVVDGSHGCPSSNENNWNHTMQGCQRRTSMKCDNSRVKNTRTEEGRKEGRNSVFRLPAT 206 G+ VD HGCP H + G + K D ++ + T +E N R P Sbjct: 214 GSAVDLQHGCPEV-----PHVLSGKPLQPEAKMDPEFIRESSTTYSTEEKEN--IREPVI 266 Query: 205 GKGDASNPD 179 KG+ N D Sbjct: 267 SKGEKINGD 275
>SPRL1_MOUSE (P70663) SPARC-like protein 1 precursor (Matrix glycoprotein Sc1)| (Extracellular matrix protein 2) Length = 650 Score = 30.0 bits (66), Expect = 2.9 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 12/89 (13%) Frame = -2 Query: 350 LK*EQLEPYDARMPAKNIHEMRQLKGEEHKD--------GGRKEGRKKLCFQITGNWEGR 195 LK E+ + D +P + E + EE ++ ++EG++ L Q T WEG Sbjct: 177 LKAEESQTQDPDIPNEEEEEEEDEEEEEEEEPEDIGAPSDNQEEGKEPLEEQPTSKWEGN 236 Query: 194 CEQS----RSRASPADLSLFSSRRRKLGN 120 EQS + P +S + + GN Sbjct: 237 REQSDDTLEESSQPTQISKTEKHQSEQGN 265
>EGF_RAT (P07522) Pro-epidermal growth factor precursor (EGF) [Contains:| Epidermal growth factor] Length = 1133 Score = 29.6 bits (65), Expect = 3.8 Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 14/87 (16%) Frame = -3 Query: 403 CESGPDGNVV---------DGSHGCP-----SSNENNWNHTMQGCQRRTSMKCDNSRVKN 266 C G +G+ + GSHGC ++ E +N T GC + C +S + Sbjct: 903 CSEGYEGDGIYCLDVDECQQGSHGCSENATCTNTEGGYNCTCAGCPSAPGLPCPDSTSPS 962 Query: 265 TRTEEGRKEGRNSVFRLPATGKGDASN 185 ++G RNS P + G N Sbjct: 963 LLGKDGCHWVRNSNTGCPPSYDGYCLN 989
>ARP6_CRYNE (Q5KAQ4) Actin-like protein ARP6| Length = 490 Score = 29.6 bits (65), Expect = 3.8 Identities = 15/33 (45%), Positives = 19/33 (57%) Frame = -2 Query: 293 EMRQLKGEEHKDGGRKEGRKKLCFQITGNWEGR 195 EMR G E K GG+ + RK+ +GNW GR Sbjct: 448 EMRYAMGLESKKGGKGKRRKEEEEVTSGNWGGR 480
>ECX1_AERPE (Q9YC03) Probable exosome complex exonuclease 1 (EC 3.1.13.-)| Length = 246 Score = 28.5 bits (62), Expect = 8.4 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%) Frame = -1 Query: 261 GRRKEGRKEETLFSDYRQLGREMRA---IQIEGQSCRSLSLLFSPEEAWQRYYLYP 103 GRR +GR E L Q+G A +E R L+ ++ P E QR+Y+ P Sbjct: 15 GRRHDGRLPEDLRPVRMQVGILHNADGSALVEFGRTRVLAAVYGPREPHQRFYVLP 70
>FOLD_BUCAI (P57557) FolD bifunctional protein [Includes:| Methylenetetrahydrofolate dehydrogenase (EC 1.5.1.5); Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9)] Length = 285 Score = 28.5 bits (62), Expect = 8.4 Identities = 15/38 (39%), Positives = 24/38 (63%) Frame = +1 Query: 103 RIEIVPLPSFLRREEKRERSAGLALDLDCSHLPSQLPV 216 +IE+ L +R++ ER GLA+ L +H+PSQ+ V Sbjct: 14 KIELKILKKVKQRKKNGERIPGLAMILVGNHIPSQIYV 51 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 57,737,938 Number of Sequences: 219361 Number of extensions: 1105531 Number of successful extensions: 3846 Number of sequences better than 10.0: 6 Number of HSP's better than 10.0 without gapping: 3715 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3844 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2851757076 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)