ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl42d08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1CN104_MOUSE (Q8BPI1) Protein C14orf104 homolog 31 1.7
2SPRL1_MOUSE (P70663) SPARC-like protein 1 precursor (Matrix glyc... 30 2.9
3EGF_RAT (P07522) Pro-epidermal growth factor precursor (EGF) [Co... 30 3.8
4ARP6_CRYNE (Q5KAQ4) Actin-like protein ARP6 30 3.8
5ECX1_AERPE (Q9YC03) Probable exosome complex exonuclease 1 (EC 3... 28 8.4
6FOLD_BUCAI (P57557) FolD bifunctional protein [Includes: Methyle... 28 8.4

>CN104_MOUSE (Q8BPI1) Protein C14orf104 homolog|
          Length = 328

 Score = 30.8 bits (68), Expect = 1.7
 Identities = 20/69 (28%), Positives = 28/69 (40%)
 Frame = -3

Query: 385 GNVVDGSHGCPSSNENNWNHTMQGCQRRTSMKCDNSRVKNTRTEEGRKEGRNSVFRLPAT 206
           G+ VD  HGCP        H + G   +   K D   ++ + T    +E  N   R P  
Sbjct: 214 GSAVDLQHGCPEV-----PHVLSGKPLQPEAKMDPEFIRESSTTYSTEEKEN--IREPVI 266

Query: 205 GKGDASNPD 179
            KG+  N D
Sbjct: 267 SKGEKINGD 275



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>SPRL1_MOUSE (P70663) SPARC-like protein 1 precursor (Matrix glycoprotein Sc1)|
           (Extracellular matrix protein 2)
          Length = 650

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 23/89 (25%), Positives = 38/89 (42%), Gaps = 12/89 (13%)
 Frame = -2

Query: 350 LK*EQLEPYDARMPAKNIHEMRQLKGEEHKD--------GGRKEGRKKLCFQITGNWEGR 195
           LK E+ +  D  +P +   E    + EE ++          ++EG++ L  Q T  WEG 
Sbjct: 177 LKAEESQTQDPDIPNEEEEEEEDEEEEEEEEPEDIGAPSDNQEEGKEPLEEQPTSKWEGN 236

Query: 194 CEQS----RSRASPADLSLFSSRRRKLGN 120
            EQS       + P  +S     + + GN
Sbjct: 237 REQSDDTLEESSQPTQISKTEKHQSEQGN 265



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>EGF_RAT (P07522) Pro-epidermal growth factor precursor (EGF) [Contains:|
            Epidermal growth factor]
          Length = 1133

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 22/87 (25%), Positives = 34/87 (39%), Gaps = 14/87 (16%)
 Frame = -3

Query: 403  CESGPDGNVV---------DGSHGCP-----SSNENNWNHTMQGCQRRTSMKCDNSRVKN 266
            C  G +G+ +          GSHGC      ++ E  +N T  GC     + C +S   +
Sbjct: 903  CSEGYEGDGIYCLDVDECQQGSHGCSENATCTNTEGGYNCTCAGCPSAPGLPCPDSTSPS 962

Query: 265  TRTEEGRKEGRNSVFRLPATGKGDASN 185
               ++G    RNS    P +  G   N
Sbjct: 963  LLGKDGCHWVRNSNTGCPPSYDGYCLN 989



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>ARP6_CRYNE (Q5KAQ4) Actin-like protein ARP6|
          Length = 490

 Score = 29.6 bits (65), Expect = 3.8
 Identities = 15/33 (45%), Positives = 19/33 (57%)
 Frame = -2

Query: 293 EMRQLKGEEHKDGGRKEGRKKLCFQITGNWEGR 195
           EMR   G E K GG+ + RK+     +GNW GR
Sbjct: 448 EMRYAMGLESKKGGKGKRRKEEEEVTSGNWGGR 480



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>ECX1_AERPE (Q9YC03) Probable exosome complex exonuclease 1 (EC 3.1.13.-)|
          Length = 246

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
 Frame = -1

Query: 261 GRRKEGRKEETLFSDYRQLGREMRA---IQIEGQSCRSLSLLFSPEEAWQRYYLYP 103
           GRR +GR  E L     Q+G    A     +E    R L+ ++ P E  QR+Y+ P
Sbjct: 15  GRRHDGRLPEDLRPVRMQVGILHNADGSALVEFGRTRVLAAVYGPREPHQRFYVLP 70



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>FOLD_BUCAI (P57557) FolD bifunctional protein [Includes:|
           Methylenetetrahydrofolate dehydrogenase (EC 1.5.1.5);
           Methenyltetrahydrofolate cyclohydrolase (EC 3.5.4.9)]
          Length = 285

 Score = 28.5 bits (62), Expect = 8.4
 Identities = 15/38 (39%), Positives = 24/38 (63%)
 Frame = +1

Query: 103 RIEIVPLPSFLRREEKRERSAGLALDLDCSHLPSQLPV 216
           +IE+  L    +R++  ER  GLA+ L  +H+PSQ+ V
Sbjct: 14  KIELKILKKVKQRKKNGERIPGLAMILVGNHIPSQIYV 51


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 57,737,938
Number of Sequences: 219361
Number of extensions: 1105531
Number of successful extensions: 3846
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 3715
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3844
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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