Clone Name | bastl42d08 |
---|---|
Clone Library Name | barley_pub |
>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence Length = 261265 Score = 56.0 bits (28), Expect = 1e-04 Identities = 37/40 (92%) Strand = Plus / Minus Query: 354 ggacagccatggctaccatctacgacattgccgtcggggc 393 |||||||||||||||||||||| ||||||| | ||||||| Sbjct: 2906 ggacagccatggctaccatctatgacattggcctcggggc 2867 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 433 ttcgcgttcctacggctacagccc 456 ||||| |||||||||||||||||| Sbjct: 2826 ttcgctttcctacggctacagccc 2803
>gb|U40802.2| Caenorhabditis elegans cosmid ZC477, complete sequence Length = 31787 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Minus Query: 72 ccaccacgtccgccaccaccaccag 96 ||||||||||| ||||||||||||| Sbjct: 1571 ccaccacgtccaccaccaccaccag 1547
>ref|NM_068703.4| Caenorhabditis elegans DEnse Body family member (deb-1) (deb-1) mRNA, complete cds Length = 3131 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 72 ccaccacgtccgccaccaccaccag 96 ||||||||||| ||||||||||||| Sbjct: 2496 ccaccacgtccaccaccaccaccag 2520
>ref|NM_171374.3| Caenorhabditis elegans DEnse Body family member (deb-1) (deb-1) mRNA, complete cds Length = 3562 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 72 ccaccacgtccgccaccaccaccag 96 ||||||||||| ||||||||||||| Sbjct: 2496 ccaccacgtccaccaccaccaccag 2520
>ref|NM_068704.4| Caenorhabditis elegans DEnse Body family member (deb-1) (deb-1) mRNA, complete cds Length = 1585 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 72 ccaccacgtccgccaccaccaccag 96 ||||||||||| ||||||||||||| Sbjct: 485 ccaccacgtccaccaccaccaccag 509
>gb|J04804.1|CELDEB1A C.elegans vinculin (deb-1) gene, complete cds Length = 12263 Score = 42.1 bits (21), Expect = 1.6 Identities = 24/25 (96%) Strand = Plus / Plus Query: 72 ccaccacgtccgccaccaccaccag 96 ||||||||||| ||||||||||||| Sbjct: 9991 ccaccacgtccaccaccaccaccag 10015
>ref|NM_121465.3| Arabidopsis thaliana ATP binding / ATP-dependent helicase/ helicase/ nucleic acid binding AT5G14610 mRNA, complete cds Length = 2661 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 ccaccacgtccgccaccaccacca 95 |||||||| ||||||||||||||| Sbjct: 2064 ccaccacggccgccaccaccacca 2041
>ref|XM_591149.2| PREDICTED: Bos taurus similar to Transcriptional enhancer factor TEF-5 (TEA domain family member 3) (TEAD-3) (DTEF-1) (LOC513466), mRNA Length = 1836 Score = 40.1 bits (20), Expect = 6.1 Identities = 26/28 (92%) Strand = Plus / Plus Query: 71 cccaccacgtccgccaccaccaccagga 98 |||||||| |||||||||||||||||| Sbjct: 1304 cccaccaccaccgccaccaccaccagga 1331
>ref|XM_367600.1| Magnaporthe grisea 70-15 chromosome III hypothetical protein (MG07511.4) partial mRNA Length = 1248 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 ccaccacgtccgccaccaccacca 95 |||||||| ||||||||||||||| Sbjct: 569 ccaccacggccgccaccaccacca 546
>gb|AC024811.1| Caenorhabditis elegans cosmid Y54E10BL, complete sequence Length = 26858 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 ccaccacgtccgccaccaccacca 95 |||||||| ||||||||||||||| Sbjct: 12983 ccaccacggccgccaccaccacca 12960
>ref|XM_538283.2| PREDICTED: Canis familiaris similar to Receptor-type tyrosine-protein phosphatase beta precursor (Protein-tyrosine phosphatase beta) (R-PTP-beta) (LOC481162), mRNA Length = 7104 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 85 caccaccaccaggagtccag 104 |||||||||||||||||||| Sbjct: 3454 caccaccaccaggagtccag 3435
>ref|XM_883620.1| Candida albicans SC5314 hypothetical protein (CaJ7.0098) partial mRNA Length = 2307 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 75 ccacgtccgccaccaccaccagga 98 |||| ||||||||||||||||||| Sbjct: 1924 ccacctccgccaccaccaccagga 1947
>ref|XM_715234.1| Candida albicans SC5314 hypothetical protein (CaO19.7034) partial mRNA Length = 2307 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 75 ccacgtccgccaccaccaccagga 98 |||| ||||||||||||||||||| Sbjct: 1924 ccacctccgccaccaccaccagga 1947
>gb|AC163720.2| Mus musculus BAC clone RP23-424C5 from chromosome 16, complete sequence Length = 206284 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 72 ccaccacgtccgccaccaccacca 95 ||||||||||| |||||||||||| Sbjct: 67760 ccaccacgtccaccaccaccacca 67783
>emb|AL662946.2|OSJN00139 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ991113_30, complete sequence Length = 141128 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 accaggagtccaggatagag 111 |||||||||||||||||||| Sbjct: 123790 accaggagtccaggatagag 123771
>emb|AL163792.1|ATT15N1 Arabidopsis thaliana DNA chromosome 5, BAC clone T15N1 (ESSA project) Length = 86574 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 ccaccacgtccgccaccaccacca 95 |||||||| ||||||||||||||| Sbjct: 51306 ccaccacggccgccaccaccacca 51283
>gb|U51079.1|DEU51079 Drosophila equinoxialis Carmody period protein (per) gene, partial cds Length = 1189 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 ccaccacgtccgccaccaccacca 95 ||||||| |||||||||||||||| Sbjct: 632 ccaccacctccgccaccaccacca 609
>gb|U51075.1|DEU51075 Drosophila equinoxialis B33 period protein (per) gene, partial cds Length = 1189 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 ccaccacgtccgccaccaccacca 95 ||||||| |||||||||||||||| Sbjct: 632 ccaccacctccgccaccaccacca 609
>emb|X55693.1|LEEXTEN13 Tomato mRNA for a glycine-rich protein (clone w10-1) Length = 402 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 ccaccacgtccgccaccaccacca 95 |||||||| ||||||||||||||| Sbjct: 308 ccaccacggccgccaccaccacca 285
>emb|X74106.1|NTGRPR N.tabacum gene for glycine-rich protein Length = 888 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 ccaccacgtccgccaccaccacca 95 |||||||| ||||||||||||||| Sbjct: 518 ccaccacgaccgccaccaccacca 495
>ref|NM_058683.2| Caenorhabditis elegans DNaJ domain (prokaryotic heat shock protein) family member (dnj-28) (dnj-28) mRNA, complete cds Length = 1621 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 ccaccacgtccgccaccaccacca 95 |||||||| ||||||||||||||| Sbjct: 1564 ccaccacggccgccaccaccacca 1541
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 accaggagtccaggatagag 111 |||||||||||||||||||| Sbjct: 24407379 accaggagtccaggatagag 24407360
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 ccaccaccaggagtccagga 106 |||||||||||||||||||| Sbjct: 27411913 ccaccaccaggagtccagga 27411894
>dbj|AP006460.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC clone:OSJNBb0003M19 Length = 171790 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 87 ccaccaccaggagtccagga 106 |||||||||||||||||||| Sbjct: 117574 ccaccaccaggagtccagga 117555
>dbj|AK120849.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023023F02, full insert sequence Length = 3155 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 92 accaggagtccaggatagag 111 |||||||||||||||||||| Sbjct: 2502 accaggagtccaggatagag 2521
>emb|X55694.1|LEEXTEN14 Tomato extensin mRNA (clone w10-1 L) Length = 402 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 72 ccaccacgtccgccaccaccacca 95 |||||||| ||||||||||||||| Sbjct: 95 ccaccacggccgccaccaccacca 118
>emb|X55692.1|LEEXTEN12 Tomato extensin mRNA (clone w1-8 L) Length = 619 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 72 ccaccacgtccgccaccaccacca 95 |||||||| ||||||||||||||| Sbjct: 266 ccaccacggccgccaccaccacca 289
>emb|X55691.1|LEEXTEN11 Tomato mRNA for a glycine-rich protein (clone w1-8) Length = 619 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 ccaccacgtccgccaccaccacca 95 |||||||| ||||||||||||||| Sbjct: 354 ccaccacggccgccaccaccacca 331
>emb|X55690.1|LEEXTEN10 Tomato mRNA for a glycine-rich protein (clone uE-7) Length = 385 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 ccaccacgtccgccaccaccacca 95 |||||||| ||||||||||||||| Sbjct: 84 ccaccacggccgccaccaccacca 61
>emb|X55689.1|LEEXTEN9 Tomato mRNA for a glycine-rich protein (clone wN) Length = 586 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 ccaccacgtccgccaccaccacca 95 |||||||| ||||||||||||||| Sbjct: 285 ccaccacggccgccaccaccacca 262
>emb|X55688.1|LEEXTEN8 Tomato mRNA for a glycine-rich protein (clone wM) Length = 693 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 ccaccacgtccgccaccaccacca 95 |||||||| ||||||||||||||| Sbjct: 393 ccaccacggccgccaccaccacca 370
>gb|AY530952.1| Zea mays unknown (Z576C20.2), putative heme oxygenase 1 (Z576C20.3), anthocyanin biosynthesis regulatory protein Pl1_B73 (Z576C20.4), putative growth-regulating factor 1 (Z576C20.6), and putative aminoalcoholphosphotransferase (Z576C20.14) genes, complete cds; and putative receptor protein kinase (Z576C20.21) gene, partial cds Length = 155173 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 ccaccacgtccgccaccaccacca 95 ||||||||||| |||||||||||| Sbjct: 102310 ccaccacgtccaccaccaccacca 102287
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome Length = 4829781 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 72 ccaccacgtccgccaccaccacca 95 |||||||| ||||||||||||||| Sbjct: 1721922 ccaccacggccgccaccaccacca 1721899
>emb|AL606613.3|OSJN00051 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K20, complete sequence Length = 116983 Score = 40.1 bits (20), Expect = 6.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 92 accaggagtccaggatagag 111 |||||||||||||||||||| Sbjct: 701 accaggagtccaggatagag 682
>emb|CT009704.12| Mouse DNA sequence from clone RP23-115B21 on chromosome 16, complete sequence Length = 226520 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Plus Query: 72 ccaccacgtccgccaccaccacca 95 ||||||||||| |||||||||||| Sbjct: 176355 ccaccacgtccaccaccaccacca 176378
>dbj|AP006852.1| Candida albicans genomic DNA, chromosome 7, complete sequence Length = 949626 Score = 40.1 bits (20), Expect = 6.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 75 ccacgtccgccaccaccaccagga 98 |||| ||||||||||||||||||| Sbjct: 157885 ccacctccgccaccaccaccagga 157862 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,991,263 Number of Sequences: 3902068 Number of extensions: 2991263 Number of successful extensions: 60773 Number of sequences better than 10.0: 36 Number of HSP's better than 10.0 without gapping: 36 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 60592 Number of HSP's gapped (non-prelim): 181 length of query: 456 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 434 effective length of database: 17,147,199,772 effective search space: 7441884701048 effective search space used: 7441884701048 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)