ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl42d08
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence 56 1e-04
2gb|U40802.2| Caenorhabditis elegans cosmid ZC477, complete sequence 42 1.6
3ref|NM_068703.4| Caenorhabditis elegans DEnse Body family member... 42 1.6
4ref|NM_171374.3| Caenorhabditis elegans DEnse Body family member... 42 1.6
5ref|NM_068704.4| Caenorhabditis elegans DEnse Body family member... 42 1.6
6gb|J04804.1|CELDEB1A C.elegans vinculin (deb-1) gene, complete cds 42 1.6
7ref|NM_121465.3| Arabidopsis thaliana ATP binding / ATP-dependen... 40 6.1
8ref|XM_591149.2| PREDICTED: Bos taurus similar to Transcriptiona... 40 6.1
9ref|XM_367600.1| Magnaporthe grisea 70-15 chromosome III hypothe... 40 6.1
10gb|AC024811.1| Caenorhabditis elegans cosmid Y54E10BL, complete ... 40 6.1
11ref|XM_538283.2| PREDICTED: Canis familiaris similar to Receptor... 40 6.1
12ref|XM_883620.1| Candida albicans SC5314 hypothetical protein (C... 40 6.1
13ref|XM_715234.1| Candida albicans SC5314 hypothetical protein (C... 40 6.1
14gb|AC163720.2| Mus musculus BAC clone RP23-424C5 from chromosome... 40 6.1
15emb|AL662946.2|OSJN00139 Oryza sativa genomic DNA, chromosome 4,... 40 6.1
16emb|AL163792.1|ATT15N1 Arabidopsis thaliana DNA chromosome 5, BA... 40 6.1
17gb|U51079.1|DEU51079 Drosophila equinoxialis Carmody period prot... 40 6.1
18gb|U51075.1|DEU51075 Drosophila equinoxialis B33 period protein ... 40 6.1
19emb|X55693.1|LEEXTEN13 Tomato mRNA for a glycine-rich protein (c... 40 6.1
20emb|X74106.1|NTGRPR N.tabacum gene for glycine-rich protein 40 6.1
21ref|NM_058683.2| Caenorhabditis elegans DNaJ domain (prokaryotic... 40 6.1
22dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
23dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
24dbj|AP006460.4| Oryza sativa (japonica cultivar-group) genomic D... 40 6.1
25dbj|AK120849.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 6.1
26emb|X55694.1|LEEXTEN14 Tomato extensin mRNA (clone w10-1 L) 40 6.1
27emb|X55692.1|LEEXTEN12 Tomato extensin mRNA (clone w1-8 L) 40 6.1
28emb|X55691.1|LEEXTEN11 Tomato mRNA for a glycine-rich protein (c... 40 6.1
29emb|X55690.1|LEEXTEN10 Tomato mRNA for a glycine-rich protein (c... 40 6.1
30emb|X55689.1|LEEXTEN9 Tomato mRNA for a glycine-rich protein (cl... 40 6.1
31emb|X55688.1|LEEXTEN8 Tomato mRNA for a glycine-rich protein (cl... 40 6.1
32gb|AY530952.1| Zea mays unknown (Z576C20.2), putative heme oxyge... 40 6.1
33gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 6.1
34emb|AL606613.3|OSJN00051 Oryza sativa genomic DNA, chromosome 4,... 40 6.1
35emb|CT009704.12| Mouse DNA sequence from clone RP23-115B21 on ch... 40 6.1
36dbj|AP006852.1| Candida albicans genomic DNA, chromosome 7, comp... 40 6.1

>gb|AF427791.1| Hordeum vulgare Mla locus, complete sequence
          Length = 261265

 Score = 56.0 bits (28), Expect = 1e-04
 Identities = 37/40 (92%)
 Strand = Plus / Minus

                                                    
Query: 354  ggacagccatggctaccatctacgacattgccgtcggggc 393
            |||||||||||||||||||||| ||||||| | |||||||
Sbjct: 2906 ggacagccatggctaccatctatgacattggcctcggggc 2867



 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 433  ttcgcgttcctacggctacagccc 456
            ||||| ||||||||||||||||||
Sbjct: 2826 ttcgctttcctacggctacagccc 2803



to top

>gb|U40802.2| Caenorhabditis elegans cosmid ZC477, complete sequence
          Length = 31787

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Minus

                                     
Query: 72   ccaccacgtccgccaccaccaccag 96
            ||||||||||| |||||||||||||
Sbjct: 1571 ccaccacgtccaccaccaccaccag 1547



to top

>ref|NM_068703.4| Caenorhabditis elegans DEnse Body family member (deb-1) (deb-1) mRNA,
            complete cds
          Length = 3131

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 72   ccaccacgtccgccaccaccaccag 96
            ||||||||||| |||||||||||||
Sbjct: 2496 ccaccacgtccaccaccaccaccag 2520



to top

>ref|NM_171374.3| Caenorhabditis elegans DEnse Body family member (deb-1) (deb-1) mRNA,
            complete cds
          Length = 3562

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                     
Query: 72   ccaccacgtccgccaccaccaccag 96
            ||||||||||| |||||||||||||
Sbjct: 2496 ccaccacgtccaccaccaccaccag 2520



to top

>ref|NM_068704.4| Caenorhabditis elegans DEnse Body family member (deb-1) (deb-1)
           mRNA, complete cds
          Length = 1585

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 72  ccaccacgtccgccaccaccaccag 96
           ||||||||||| |||||||||||||
Sbjct: 485 ccaccacgtccaccaccaccaccag 509



to top

>gb|J04804.1|CELDEB1A C.elegans vinculin (deb-1) gene, complete cds
          Length = 12263

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 72    ccaccacgtccgccaccaccaccag 96
             ||||||||||| |||||||||||||
Sbjct: 9991  ccaccacgtccaccaccaccaccag 10015



to top

>ref|NM_121465.3| Arabidopsis thaliana ATP binding / ATP-dependent helicase/ helicase/
            nucleic acid binding AT5G14610 mRNA, complete cds
          Length = 2661

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 72   ccaccacgtccgccaccaccacca 95
            |||||||| |||||||||||||||
Sbjct: 2064 ccaccacggccgccaccaccacca 2041



to top

>ref|XM_591149.2| PREDICTED: Bos taurus similar to Transcriptional enhancer factor
            TEF-5 (TEA domain family member 3) (TEAD-3) (DTEF-1)
            (LOC513466), mRNA
          Length = 1836

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                        
Query: 71   cccaccacgtccgccaccaccaccagga 98
            ||||||||  ||||||||||||||||||
Sbjct: 1304 cccaccaccaccgccaccaccaccagga 1331



to top

>ref|XM_367600.1| Magnaporthe grisea 70-15 chromosome III hypothetical protein
           (MG07511.4) partial mRNA
          Length = 1248

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 72  ccaccacgtccgccaccaccacca 95
           |||||||| |||||||||||||||
Sbjct: 569 ccaccacggccgccaccaccacca 546



to top

>gb|AC024811.1| Caenorhabditis elegans cosmid Y54E10BL, complete sequence
          Length = 26858

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 72    ccaccacgtccgccaccaccacca 95
             |||||||| |||||||||||||||
Sbjct: 12983 ccaccacggccgccaccaccacca 12960



to top

>ref|XM_538283.2| PREDICTED: Canis familiaris similar to Receptor-type tyrosine-protein
            phosphatase beta precursor (Protein-tyrosine phosphatase
            beta) (R-PTP-beta) (LOC481162), mRNA
          Length = 7104

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 85   caccaccaccaggagtccag 104
            ||||||||||||||||||||
Sbjct: 3454 caccaccaccaggagtccag 3435



to top

>ref|XM_883620.1| Candida albicans SC5314 hypothetical protein (CaJ7.0098) partial mRNA
          Length = 2307

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 75   ccacgtccgccaccaccaccagga 98
            |||| |||||||||||||||||||
Sbjct: 1924 ccacctccgccaccaccaccagga 1947



to top

>ref|XM_715234.1| Candida albicans SC5314 hypothetical protein (CaO19.7034) partial
            mRNA
          Length = 2307

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 75   ccacgtccgccaccaccaccagga 98
            |||| |||||||||||||||||||
Sbjct: 1924 ccacctccgccaccaccaccagga 1947



to top

>gb|AC163720.2| Mus musculus BAC clone RP23-424C5 from chromosome 16, complete sequence
          Length = 206284

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 72    ccaccacgtccgccaccaccacca 95
             ||||||||||| ||||||||||||
Sbjct: 67760 ccaccacgtccaccaccaccacca 67783



to top

>emb|AL662946.2|OSJN00139 Oryza sativa genomic DNA, chromosome 4, BAC clone: OJ991113_30, complete
              sequence
          Length = 141128

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 92     accaggagtccaggatagag 111
              ||||||||||||||||||||
Sbjct: 123790 accaggagtccaggatagag 123771



to top

>emb|AL163792.1|ATT15N1 Arabidopsis thaliana DNA chromosome 5, BAC clone T15N1 (ESSA project)
          Length = 86574

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 72    ccaccacgtccgccaccaccacca 95
             |||||||| |||||||||||||||
Sbjct: 51306 ccaccacggccgccaccaccacca 51283



to top

>gb|U51079.1|DEU51079 Drosophila equinoxialis Carmody period protein (per) gene, partial
           cds
          Length = 1189

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 72  ccaccacgtccgccaccaccacca 95
           ||||||| ||||||||||||||||
Sbjct: 632 ccaccacctccgccaccaccacca 609



to top

>gb|U51075.1|DEU51075 Drosophila equinoxialis B33 period protein (per) gene, partial cds
          Length = 1189

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 72  ccaccacgtccgccaccaccacca 95
           ||||||| ||||||||||||||||
Sbjct: 632 ccaccacctccgccaccaccacca 609



to top

>emb|X55693.1|LEEXTEN13 Tomato mRNA for a glycine-rich protein (clone w10-1)
          Length = 402

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 72  ccaccacgtccgccaccaccacca 95
           |||||||| |||||||||||||||
Sbjct: 308 ccaccacggccgccaccaccacca 285



to top

>emb|X74106.1|NTGRPR N.tabacum gene for glycine-rich protein
          Length = 888

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 72  ccaccacgtccgccaccaccacca 95
           |||||||| |||||||||||||||
Sbjct: 518 ccaccacgaccgccaccaccacca 495



to top

>ref|NM_058683.2| Caenorhabditis elegans DNaJ domain (prokaryotic heat shock protein)
            family member (dnj-28) (dnj-28) mRNA, complete cds
          Length = 1621

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 72   ccaccacgtccgccaccaccacca 95
            |||||||| |||||||||||||||
Sbjct: 1564 ccaccacggccgccaccaccacca 1541



to top

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 92       accaggagtccaggatagag 111
                ||||||||||||||||||||
Sbjct: 24407379 accaggagtccaggatagag 24407360



to top

>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 87       ccaccaccaggagtccagga 106
                ||||||||||||||||||||
Sbjct: 27411913 ccaccaccaggagtccagga 27411894



to top

>dbj|AP006460.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OSJNBb0003M19
          Length = 171790

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 87     ccaccaccaggagtccagga 106
              ||||||||||||||||||||
Sbjct: 117574 ccaccaccaggagtccagga 117555



to top

>dbj|AK120849.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023023F02, full
            insert sequence
          Length = 3155

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 92   accaggagtccaggatagag 111
            ||||||||||||||||||||
Sbjct: 2502 accaggagtccaggatagag 2521



to top

>emb|X55694.1|LEEXTEN14 Tomato extensin mRNA (clone w10-1 L)
          Length = 402

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 72  ccaccacgtccgccaccaccacca 95
           |||||||| |||||||||||||||
Sbjct: 95  ccaccacggccgccaccaccacca 118



to top

>emb|X55692.1|LEEXTEN12 Tomato extensin mRNA (clone w1-8 L)
          Length = 619

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 72  ccaccacgtccgccaccaccacca 95
           |||||||| |||||||||||||||
Sbjct: 266 ccaccacggccgccaccaccacca 289



to top

>emb|X55691.1|LEEXTEN11 Tomato mRNA for a glycine-rich protein (clone w1-8)
          Length = 619

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 72  ccaccacgtccgccaccaccacca 95
           |||||||| |||||||||||||||
Sbjct: 354 ccaccacggccgccaccaccacca 331



to top

>emb|X55690.1|LEEXTEN10 Tomato mRNA for a glycine-rich protein (clone uE-7)
          Length = 385

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                  
Query: 72 ccaccacgtccgccaccaccacca 95
          |||||||| |||||||||||||||
Sbjct: 84 ccaccacggccgccaccaccacca 61



to top

>emb|X55689.1|LEEXTEN9 Tomato mRNA for a glycine-rich protein (clone wN)
          Length = 586

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 72  ccaccacgtccgccaccaccacca 95
           |||||||| |||||||||||||||
Sbjct: 285 ccaccacggccgccaccaccacca 262



to top

>emb|X55688.1|LEEXTEN8 Tomato mRNA for a glycine-rich protein (clone wM)
          Length = 693

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 72  ccaccacgtccgccaccaccacca 95
           |||||||| |||||||||||||||
Sbjct: 393 ccaccacggccgccaccaccacca 370



to top

>gb|AY530952.1| Zea mays unknown (Z576C20.2), putative heme oxygenase 1 (Z576C20.3),
              anthocyanin biosynthesis regulatory protein Pl1_B73
              (Z576C20.4), putative growth-regulating factor 1
              (Z576C20.6), and putative aminoalcoholphosphotransferase
              (Z576C20.14) genes, complete cds; and putative receptor
              protein kinase (Z576C20.21) gene, partial cds
          Length = 155173

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 72     ccaccacgtccgccaccaccacca 95
              ||||||||||| ||||||||||||
Sbjct: 102310 ccaccacgtccaccaccaccacca 102287



to top

>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 72      ccaccacgtccgccaccaccacca 95
               |||||||| |||||||||||||||
Sbjct: 1721922 ccaccacggccgccaccaccacca 1721899



to top

>emb|AL606613.3|OSJN00051 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0084K20,
           complete sequence
          Length = 116983

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 92  accaggagtccaggatagag 111
           ||||||||||||||||||||
Sbjct: 701 accaggagtccaggatagag 682



to top

>emb|CT009704.12| Mouse DNA sequence from clone RP23-115B21 on chromosome 16, complete
              sequence
          Length = 226520

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 72     ccaccacgtccgccaccaccacca 95
              ||||||||||| ||||||||||||
Sbjct: 176355 ccaccacgtccaccaccaccacca 176378



to top

>dbj|AP006852.1| Candida albicans genomic DNA, chromosome 7, complete sequence
          Length = 949626

 Score = 40.1 bits (20), Expect = 6.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 75     ccacgtccgccaccaccaccagga 98
              |||| |||||||||||||||||||
Sbjct: 157885 ccacctccgccaccaccaccagga 157862


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,991,263
Number of Sequences: 3902068
Number of extensions: 2991263
Number of successful extensions: 60773
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 36
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 60592
Number of HSP's gapped (non-prelim): 181
length of query: 456
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 434
effective length of database: 17,147,199,772
effective search space: 7441884701048
effective search space used: 7441884701048
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top