>DNBI_HCMVA (P17147) Major DNA-binding protein (MDBP)|
          Length = 1235

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 20/46 (43%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = -2

Query: 235 GNGHQVVA*PSDGVWIGRGGNEGGGL-VMRSHGQRNLRASNPKARR 101
           G G  V   PSDG+  GRGG  GG    M   G R L AS  +  R
Sbjct: 554 GGGRDVSGGPSDGLGGGRGGGGGGDSGGMMGRGGRMLGASVDRTYR 599

>Y150_MYCPN (P75036) Very hypothetical mgpC-like protein MPN150 (E07_orf224)|
          Length = 224

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 19/55 (34%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +2

Query: 140 AMAPHYQAATLIASPSYPDAITWSSDNLVAVASGHIVTILNPAALDGP-RGLVVL 301
           A A  Y   T   + +Y  A+TWS+   +  A G+   + N A L+GP  GL  L
Sbjct: 88  AGAVGYDMTTDTNASTYNQALTWSTTAGLDSAGGYKALVENTAGLNGPINGLFTL 142

>DHE3_BACTN (P94598) Glutamate dehydrogenase (EC 1.4.1.3) (GDH)|
           (NAD(P)H-utilizing glutamate dehydrogenase)
          Length = 444

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 17/33 (51%), Positives = 20/33 (60%)
 Frame = -3

Query: 348 RSSLLTTPMGKGSLGRSTTSPRGPSSAAGFRIV 250
           ++SL T PMG G  G S  SPRG S+A   R V
Sbjct: 112 KNSLTTLPMGGGK-GGSDFSPRGKSNAEVMRFV 143

>SYQ_DROME (Q9Y105) Probable glutaminyl-tRNA synthetase (EC 6.1.1.18)|
           (Glutamine--tRNA ligase) (GlnRS)
          Length = 778

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +3

Query: 294 LCFALGILFPLEWSTGKISLN 356
           LC ALGI  P++W  G++++N
Sbjct: 473 LCNALGIYCPVQWEYGRLNMN 493

>MEFV_HUMAN (O15553) Pyrin (Marenostrin)|
          Length = 781

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 1/57 (1%)
 Frame = -2

Query: 178 GNEGGGLVMRSHGQRNLRASNPKARRQL-RXXXXXXXXAEREGIREQGFVFTKRPSI 11
           GNEG G      G  +LR S P+A R L R           EG+  QG   T+ P++
Sbjct: 126 GNEGNGPRPYGGGAASLRCSQPEAGRGLSRKPLSKRREKASEGLDAQGKPRTRSPAL 182

>CSPG2_HUMAN (P13611) Versican core protein precursor (Large fibroblast|
            proteoglycan) (Chondroitin sulfate proteoglycan core
            protein 2) (PG-M) (Glial hyaluronate-binding protein)
            (GHAP)
          Length = 3396

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 30/81 (37%), Positives = 36/81 (44%), Gaps = 10/81 (12%)
 Frame = +2

Query: 149  PHYQAATLIAS---------PSYPDAITWSSDNLVAVASGHIVTILNPAALDG-PRGLVV 298
            P+Y   TL  S         PS P  I   S+     ASGH   I  P+AL G   G  V
Sbjct: 2805 PYYTDTTLAVSTFAKLSSQTPSSPLTIYSGSE-----ASGH-TEIPQPSALPGIDVGSSV 2858

Query: 299  LRPRDPFPIGVVNREDLFEPS 361
            + P+D F    VN E  F+PS
Sbjct: 2859 MSPQDSFKEIHVNIEATFKPS 2879

>PTPRD_MOUSE (Q64487) Receptor-type tyrosine-protein phosphatase delta precursor|
           (EC 3.1.3.48) (Protein-tyrosine phosphatase delta)
           (R-PTP-delta)
          Length = 1894

 Score = 28.9 bits (63), Expect = 3.2
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -2

Query: 364 LTWFKEIFPVDHSNGKRIPRAKHNESARPVECRRVQDRD 248
           +TWFK+  PVD SN     +   +ES   ++  + ++ D
Sbjct: 164 ITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESD 202

>DCD_COREF (Q8FM44) Deoxycytidine triphosphate deaminase (EC 3.5.4.13) (dCTP|
           deaminase)
          Length = 193

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 13/29 (44%), Positives = 16/29 (55%)
 Frame = -3

Query: 345 SSLLTTPMGKGSLGRSTTSPRGPSSAAGF 259
           SS   TP G GSLG      RGP+ + G+
Sbjct: 155 SSPAETPYGSGSLGSKYQGQRGPTPSKGY 183

>GLYA_EHRRW (Q5HAJ7) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine|
           methylase) (SHMT)
          Length = 421

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 20/73 (27%), Positives = 32/73 (43%)
 Frame = +2

Query: 137 LAMAPHYQAATLIASPSYPDAITWSSDNLVAVASGHIVTILNPAALDGPRGLVVLRPRDP 316
           LA   HY  A L+A+  +P  I ++          H++T      L GPRG V++     
Sbjct: 201 LADIAHY--AGLVAAGEFPSPIEYA----------HVITSTTHKTLRGPRGAVIM----- 243

Query: 317 FPIGVVNREDLFE 355
                 N ED+++
Sbjct: 244 -----TNHEDIYK 251

>GLYA_EHRRG (Q5FG30) Serine hydroxymethyltransferase (EC 2.1.2.1) (Serine|
           methylase) (SHMT)
          Length = 421

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 20/73 (27%), Positives = 32/73 (43%)
 Frame = +2

Query: 137 LAMAPHYQAATLIASPSYPDAITWSSDNLVAVASGHIVTILNPAALDGPRGLVVLRPRDP 316
           LA   HY  A L+A+  +P  I ++          H++T      L GPRG V++     
Sbjct: 201 LADIAHY--AGLVAAGEFPSPIEYA----------HVITSTTHKTLRGPRGAVIM----- 243

Query: 317 FPIGVVNREDLFE 355
                 N ED+++
Sbjct: 244 -----TNHEDIYK 251

>YGY3_HALSQ (P21561) Hypothetical 50.6 kDa protein in the 5'region of gyrA and|
           gyrB (ORF 3)
          Length = 437

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 19/50 (38%), Positives = 23/50 (46%), Gaps = 7/50 (14%)
 Frame = +1

Query: 154 LPGRHPHCLPV-------LSRRHHLVKRQLGGRCLWPHRHDPEPGGTRRA 282
           L GRHP    V         RR HL++R++GG     HR      G RRA
Sbjct: 81  LRGRHPRVRRVPQRDQDGAPRRRHLLRRRVGG-----HRGRNRHAGDRRA 125

>NIFH_TRITH (P26254) Nitrogenase iron protein (EC 1.18.6.1) (Nitrogenase|
           component II) (Nitrogenase Fe protein) (Nitrogenase
           reductase)
          Length = 294

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 17/43 (39%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
 Frame = -3

Query: 321 GKGSLGRSTTSPRGPSSAAG-----FRIVTMWPEATATKLSLD 208
           GKG +G+STTS    ++ A        IV   P+A +T+L LD
Sbjct: 8   GKGGIGKSTTSQNTLAAMANRHGQRIMIVGCDPKADSTRLILD 50

>NIFH_CYAA5 (O07641) Nitrogenase iron protein (EC 1.18.6.1) (Nitrogenase|
           component II) (Nitrogenase Fe protein) (Nitrogenase
           reductase)
          Length = 327

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 21/57 (36%), Positives = 30/57 (52%), Gaps = 5/57 (8%)
 Frame = -3

Query: 366 H*LGSKRSSLLTTPM--GKGSLGRSTTSPRGPSSAA---GFRIVTMWPEATATKLSL 211
           H L +KR S +      GKG +G+STTS    ++ A      IV   P+A +T+L L
Sbjct: 28  HSLSNKRESTMRQIAFYGKGGIGKSTTSQNTIAALAETNRIMIVGCDPKADSTRLML 84


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 52,286,125
Number of Sequences: 219361
Number of extensions: 1035646
Number of successful extensions: 3225
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 3116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3222
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 1407308304
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)