ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl42c09 |
|---|---|
| Clone Library Name | barley_pub |
>R13L2_ARATH (Q9STE5) Putative disease resistance RPP13-like protein 2| Length = 847 Score = 48.9 bits (115), Expect = 7e-06 Identities = 22/66 (33%), Positives = 41/66 (62%) Frame = +3 Query: 150 QEYALIRGVRGDIQYINDELCSMQAFLTNLGTGDEEHDAQIQDWAKQIRDIAYDIEDCVD 329 +E ++ GV+ D++ + EL +Q +L N+ D+E + ++W K + DIAYD+ED +D Sbjct: 19 EEAPMLIGVKDDLEELKTELTCIQVYLKNVEVCDKEDEVS-KEWTKLVLDIAYDVEDVLD 77 Query: 330 DFAHRL 347 + +L Sbjct: 78 TYFLKL 83
>R13L3_ARATH (Q9STE7) Putative disease resistance RPP13-like protein 3| Length = 847 Score = 43.5 bits (101), Expect = 3e-04 Identities = 20/67 (29%), Positives = 38/67 (56%) Frame = +3 Query: 153 EYALIRGVRGDIQYINDELCSMQAFLTNLGTGDEEHDAQIQDWAKQIRDIAYDIEDCVDD 332 E + GV+ D++ + EL + +L ++ + E + ++W K + DIAYDIED +D Sbjct: 20 EVLALMGVKDDLEELKTELTCIHGYLKDVEAREREDEVS-KEWTKLVLDIAYDIEDVLDT 78 Query: 333 FAHRLPD 353 + +L + Sbjct: 79 YFLKLEE 85
>RPM1_ARATH (Q39214) Disease resistance protein RPM1 (Resistance to Pseudomonas| syringae protein 3) Length = 926 Score = 41.6 bits (96), Expect = 0.001 Identities = 24/70 (34%), Positives = 37/70 (52%), Gaps = 5/70 (7%) Frame = +3 Query: 153 EYALIRGVRGDIQYINDELCSMQAFLTNL----GTGDEEHDAQI-QDWAKQIRDIAYDIE 317 E L+ GV G+I + EL M++FL + G G Q+ Q + RD+AY IE Sbjct: 20 ETLLLSGVHGEIDKMKKELLIMKSFLEDTHKHGGNGSTTTTTQLFQTFVANTRDLAYQIE 79 Query: 318 DCVDDFAHRL 347 D +D+F + + Sbjct: 80 DILDEFGYHI 89
>RPP13_ARATH (Q9M667) Disease resistance protein RPP13 (Resistance to| Peronospora parasitica protein 13) Length = 835 Score = 40.8 bits (94), Expect = 0.002 Identities = 17/68 (25%), Positives = 39/68 (57%) Frame = +3 Query: 150 QEYALIRGVRGDIQYINDELCSMQAFLTNLGTGDEEHDAQIQDWAKQIRDIAYDIEDCVD 329 +E ++ V+ D++ + EL + +L ++ + E + ++W+K + D AYD+ED +D Sbjct: 19 EEASMFMAVKEDLEELKTELTCIHGYLKDVEAREREDEVS-KEWSKLVLDFAYDVEDVLD 77 Query: 330 DFAHRLPD 353 + +L + Sbjct: 78 TYHLKLEE 85
>DRL13_ARATH (Q9XIF0) Putative disease resistance protein At1g59780| Length = 906 Score = 38.1 bits (87), Expect = 0.012 Identities = 31/107 (28%), Positives = 53/107 (49%), Gaps = 2/107 (1%) Frame = +3 Query: 147 AQEYALIRGVRGDIQYINDELCSMQAFLTNLGTGDEEHDAQIQDWAKQIRDIAYDIEDCV 326 +QEY +GV I + D+L + AFL++ ++ A ++ ++I++I YD ED + Sbjct: 23 SQEYERFQGVEEQITELRDDLKMLMAFLSD-ADAKKQTRALARNCLEEIKEITYDAEDII 81 Query: 327 DDFAHRLPDDPXXXXXXCCSSVNVLIYGILTWFP--RREIAVKIAEL 461 + F + SVN+ L FP RREIA++I + Sbjct: 82 EIFLLK-------------GSVNM---RSLACFPGGRREIALQITSI 112
>DRL4_ARATH (Q9SX38) Putative disease resistance protein At1g50180| Length = 839 Score = 35.8 bits (81), Expect = 0.061 Identities = 16/63 (25%), Positives = 37/63 (58%), Gaps = 1/63 (1%) Frame = +3 Query: 150 QEYALIRGVRGDIQYINDELCSMQAFLTNLGTGDEEHDAQ-IQDWAKQIRDIAYDIEDCV 326 +E + G+ ++ + DEL + FL + +++H+++ +++W IR+ +YD ED + Sbjct: 19 EEPLFLFGIGDQVKQLQDELKRLNCFLKD--ADEKQHESERVRNWVAGIREASYDAEDIL 76 Query: 327 DDF 335 + F Sbjct: 77 EAF 79
>DRL9_ARATH (Q8W3K0) Probable disease resistance protein At1g58602| Length = 1138 Score = 35.8 bits (81), Expect = 0.061 Identities = 17/66 (25%), Positives = 35/66 (53%) Frame = +3 Query: 147 AQEYALIRGVRGDIQYINDELCSMQAFLTNLGTGDEEHDAQIQDWAKQIRDIAYDIEDCV 326 + EY L +GV + + +L +++FL + + A ++ ++I+DI YD ED + Sbjct: 18 SHEYTLFQGVEDQVAELKSDLNLLKSFLKD-ADAKKHTSALVRYCVEEIKDIVYDAEDVL 76 Query: 327 DDFAHR 344 + F + Sbjct: 77 ETFVQK 82
>RX24L_ARATH (Q9C646) Probable disease resistance protein RXW24L| Length = 899 Score = 33.5 bits (75), Expect = 0.30 Identities = 17/64 (26%), Positives = 36/64 (56%), Gaps = 1/64 (1%) Frame = +3 Query: 147 AQEYALIRGVRGDIQYINDELCSMQAFLTNLGTGDEEHDAQ-IQDWAKQIRDIAYDIEDC 323 +QEY +GV + + L +++FL + ++H ++ ++ ++I+DI YD ED Sbjct: 16 SQEYDQFKGVEDQVTELKSNLNLLKSFLKDADA--KKHISEMVRHCVEEIKDIVYDTEDI 73 Query: 324 VDDF 335 ++ F Sbjct: 74 IETF 77
>RP8L1_ARATH (O04093) Putative disease resistance protein RPP8-like protein 1| Length = 821 Score = 33.1 bits (74), Expect = 0.40 Identities = 15/62 (24%), Positives = 34/62 (54%) Frame = +3 Query: 150 QEYALIRGVRGDIQYINDELCSMQAFLTNLGTGDEEHDAQIQDWAKQIRDIAYDIEDCVD 329 +E A + G+ + + +L +Q+ L + E + +++++ + +RDI YD ED ++ Sbjct: 19 RESARLNGIGEQVDGLKRQLGRLQSLLKDADAKKHESE-RVRNFLEDVRDIVYDAEDIIE 77 Query: 330 DF 335 F Sbjct: 78 SF 79
>RP8L2_ARATH (Q9MAG6) Probable disease resistance RPP8-like protein 2| Length = 1271 Score = 30.8 bits (68), Expect = 2.0 Identities = 13/63 (20%), Positives = 35/63 (55%) Frame = +3 Query: 147 AQEYALIRGVRGDIQYINDELCSMQAFLTNLGTGDEEHDAQIQDWAKQIRDIAYDIEDCV 326 ++E A + G+ + + +L +Q+ L + E + +++++ + ++DI YD +D + Sbjct: 18 SRESARLNGIDEQVDGLKRQLGRLQSLLKDADAKKNETE-RVRNFLEDVKDIVYDADDII 76 Query: 327 DDF 335 + F Sbjct: 77 ESF 79
>NHA2_RHORH (P29378) Low-molecular weight cobalt-containing nitrile hydratase| subunit alpha (EC 4.2.1.84) (L-nitrilase) (L-NHase) Length = 206 Score = 30.4 bits (67), Expect = 2.6 Identities = 15/43 (34%), Positives = 21/43 (48%) Frame = -2 Query: 208 SSSLMYWMSPRTPRIRAYSWARRLPSLLTRDFTVDCEAPTTRS 80 S+ L YW+ P+ P +L L+TRD + PTT S Sbjct: 162 SAELRYWVLPQRPAGTENFTEEQLADLVTRDSLIGVSVPTTPS 204
>YBOX2_MOUSE (Q9Z2C8) Y-box-binding protein 2 (Germ cell-specific Y-box-binding| protein) (FRGY2 homolog) Length = 360 Score = 30.4 bits (67), Expect = 2.6 Identities = 14/29 (48%), Positives = 16/29 (55%) Frame = +2 Query: 137 QPPSPGVRSDPWRPRRHPVHQRRALQHAG 223 Q P+ G R +P RPR P QRR Q G Sbjct: 308 QGPTDGSRPEPQRPRNRPYFQRRRQQPPG 336
>YBOX2_HUMAN (Q9Y2T7) Y-box-binding protein 2 (Germ cell-specific Y-box-binding| protein) (Contrin) (MSY2 homolog) Length = 364 Score = 30.4 bits (67), Expect = 2.6 Identities = 14/29 (48%), Positives = 16/29 (55%) Frame = +2 Query: 137 QPPSPGVRSDPWRPRRHPVHQRRALQHAG 223 Q P+ G R +P RPR P QRR Q G Sbjct: 306 QGPADGSRPEPQRPRNRPYFQRRRQQAPG 334
>R13L1_ARATH (Q9LRR4) Putative disease resistance RPP13-like protein 1| Length = 1054 Score = 30.0 bits (66), Expect = 3.3 Identities = 9/23 (39%), Positives = 15/23 (65%) Frame = +3 Query: 270 IQDWAKQIRDIAYDIEDCVDDFA 338 ++ W ++RD+ Y ED +DD A Sbjct: 66 VEKWVNELRDVVYHAEDALDDIA 88
>RGA1_SOLBU (Q7XA42) Putative disease resistance protein RGA1 (RGA3-blb)| Length = 1025 Score = 30.0 bits (66), Expect = 3.3 Identities = 12/61 (19%), Positives = 34/61 (55%) Frame = +3 Query: 153 EYALIRGVRGDIQYINDELCSMQAFLTNLGTGDEEHDAQIQDWAKQIRDIAYDIEDCVDD 332 E L+ G + + Q ++ ++QA L + + +D +++W +++ Y+++D +D+ Sbjct: 20 ELVLLFGFQDEFQRLSSMFSTIQAVLED-AQEKQLNDKPLENWLQKLNAATYEVDDILDE 78 Query: 333 F 335 + Sbjct: 79 Y 79
>RIN3_HUMAN (Q8TB24) Ras and Rab interactor 3 (Ras interaction/interference| protein 3) Length = 984 Score = 29.6 bits (65), Expect = 4.4 Identities = 14/33 (42%), Positives = 16/33 (48%), Gaps = 8/33 (24%) Frame = -3 Query: 153 PGLGGCPA--------CSPETSRWIAKLPPPDP 79 P LG CPA + TSRW + PPP P Sbjct: 252 PPLGNCPARPLPPTSDATSPTSRWAPRRPPPPP 284
>CDT1_MOUSE (Q8R4E9) DNA replication factor Cdt1 (Double parked homolog) (DUP)| (Retroviral insertion site 2 protein) Length = 557 Score = 29.6 bits (65), Expect = 4.4 Identities = 13/27 (48%), Positives = 14/27 (51%) Frame = -3 Query: 159 RTPGLGGCPACSPETSRWIAKLPPPDP 79 R PGL CP+ PE S PP DP Sbjct: 68 RLPGLDSCPSSLPEPSSPAEPSPPADP 94
>EDN1_ATEAB (Q5NRP9) Endothelin-1 precursor (ET-1) (Preproendothelin-1) (PPET1)| Length = 202 Score = 29.3 bits (64), Expect = 5.7 Identities = 13/20 (65%), Positives = 14/20 (70%) Frame = +2 Query: 125 EQAGQPPSPGVRSDPWRPRR 184 EQ G+ PSP S PWRPRR Sbjct: 33 EQGGEQPSP---SPPWRPRR 49
>VGLC_HHV2H (Q89730) Glycoprotein C precursor| Length = 480 Score = 26.6 bits (57), Expect(2) = 5.7 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 5/42 (11%) Frame = -2 Query: 238 RLVRKACMLQSSSLMYWMSPRTPRIRAY-SWAR----RLPSL 128 RL+ + L++ + YW+ RT R AY +W R R PSL Sbjct: 197 RLIIEELTLETQGMYYWVWGRTDRPSAYGTWVRVRVFRPPSL 238 Score = 21.2 bits (43), Expect(2) = 5.7 Identities = 7/19 (36%), Positives = 12/19 (63%) Frame = -3 Query: 75 SSLTTLPANSADYGWDDDG 19 ++ T P N A++ W +DG Sbjct: 256 TAATYYPGNRAEFVWFEDG 274
>VGLC_HHV23 (P06475) Glycoprotein C precursor| Length = 480 Score = 26.6 bits (57), Expect(2) = 5.7 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 5/42 (11%) Frame = -2 Query: 238 RLVRKACMLQSSSLMYWMSPRTPRIRAY-SWAR----RLPSL 128 RL+ + L++ + YW+ RT R AY +W R R PSL Sbjct: 197 RLIIEELTLETQGMYYWVWGRTDRPSAYGTWVRVRVFRPPSL 238 Score = 21.2 bits (43), Expect(2) = 5.7 Identities = 7/19 (36%), Positives = 12/19 (63%) Frame = -3 Query: 75 SSLTTLPANSADYGWDDDG 19 ++ T P N A++ W +DG Sbjct: 256 TAATYYPGNRAEFVWFEDG 274
>VGLC_HHV2G (P03173) Glycoprotein C precursor (Glycoprotein F)| Length = 479 Score = 26.6 bits (57), Expect(2) = 5.7 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 5/42 (11%) Frame = -2 Query: 238 RLVRKACMLQSSSLMYWMSPRTPRIRAY-SWAR----RLPSL 128 RL+ + L++ + YW+ RT R AY +W R R PSL Sbjct: 196 RLIIEELTLETQGMYYWVWGRTDRPSAYGTWVRVRVFRPPSL 237 Score = 21.2 bits (43), Expect(2) = 5.7 Identities = 7/19 (36%), Positives = 12/19 (63%) Frame = -3 Query: 75 SSLTTLPANSADYGWDDDG 19 ++ T P N A++ W +DG Sbjct: 255 TAATYYPGNRAEFVWFEDG 273
>YP01_MOUSE (Q8BQM4) Protein C030036P15Rik| Length = 679 Score = 28.9 bits (63), Expect = 7.5 Identities = 12/45 (26%), Positives = 24/45 (53%) Frame = +3 Query: 189 QYINDELCSMQAFLTNLGTGDEEHDAQIQDWAKQIRDIAYDIEDC 323 Q+ E C +A + GTGDEE D + ++++ + ++ +C Sbjct: 13 QFSPIESCQAEAAAASNGTGDEEDDGPAAELLEKLQHPSAEVREC 57
>YP85_CAEEL (Q09442) Putative RNA-binding protein C08B11.5| Length = 388 Score = 28.5 bits (62), Expect = 9.7 Identities = 11/25 (44%), Positives = 14/25 (56%) Frame = -3 Query: 153 PGLGGCPACSPETSRWIAKLPPPDP 79 PG+GG P P R+ +PPP P Sbjct: 328 PGMGGMPPPPPPGMRYPGGMPPPPP 352
>DRS1_USTMA (Q4P9P3) ATP-dependent RNA helicase DRS1 (EC 3.6.1.-)| Length = 932 Score = 28.5 bits (62), Expect = 9.7 Identities = 14/27 (51%), Positives = 19/27 (70%) Frame = -1 Query: 467 GLELGDLHGDLASRKPRQDAVDQYVDG 387 GL G+LHGDL S++ R DA+ + DG Sbjct: 635 GLSAGELHGDL-SQEQRIDALTDFRDG 660 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,552,721 Number of Sequences: 219361 Number of extensions: 985767 Number of successful extensions: 4144 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 3977 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 4141 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3304846491 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
