ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl42c05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1IF41_WHEAT (Q03387) Eukaryotic initiation factor iso-4F subunit ... 69 2e-12
2PDE2A_HUMAN (O00408) cGMP-dependent 3',5'-cyclic phosphodiestera... 30 2.0
3STK6_XENLA (Q91820) Serine/threonine-protein kinase Eg2 (EC 2.7.... 28 4.5
4GMIP_MOUSE (Q6PGG2) GEM-interacting protein (GMIP) 28 7.6
5PIN3A_ORYSA (Q5VP70) Probable auxin efflux carrier component 3a ... 28 7.6
6PAK1_MOUSE (O88643) Serine/threonine-protein kinase PAK 1 (EC 2.... 28 7.6
7PAK1_HUMAN (Q13153) Serine/threonine-protein kinase PAK 1 (EC 2.... 28 7.6
8RELB_MOUSE (Q04863) Transcription factor RelB 27 10.0
9CNTRB_HUMAN (Q8N137) Centrobin (LYST-interacting protein 8) 27 10.0

>IF41_WHEAT (Q03387) Eukaryotic initiation factor iso-4F subunit p82-34|
           (eIF-(iso)4F p82-34)
          Length = 788

 Score = 69.3 bits (168), Expect = 2e-12
 Identities = 37/51 (72%), Positives = 37/51 (72%)
 Frame = +3

Query: 156 MTTDQPVISLXXXXXXXXXXXXXLFAPAFAVAASGSGDFLRPXGGGASGVS 308
           MTTDQPVISL             LFAPAFAVAASGSGDFLRP GGGASGVS
Sbjct: 1   MTTDQPVISLRPGGGGGGPRGGRLFAPAFAVAASGSGDFLRPHGGGASGVS 51



to top

>PDE2A_HUMAN (O00408) cGMP-dependent 3',5'-cyclic phosphodiesterase (EC|
           3.1.4.17) (Cyclic GMP-stimulated phosphodiesterase)
           (CGS-PDE) (cGSPDE)
          Length = 941

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 17/47 (36%), Positives = 25/47 (53%)
 Frame = +2

Query: 11  RSQTEPNPPPREEGKKKLGFLRDFLPGAPPIPCRSSCRGALVGFGTL 151
           RSQ  P   P E   +++ FL+   P  PP PC  S + AL+  G++
Sbjct: 12  RSQQYPAARPAEPRGQQV-FLKPDEPPPPPQPCADSLQDALLSLGSV 57



to top

>STK6_XENLA (Q91820) Serine/threonine-protein kinase Eg2 (EC 2.7.11.1) (pEg2)|
           (p46Eg265)
          Length = 407

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +2

Query: 5   GERSQTEPNPPPREEGKKKLGFLRDFLPGAP 97
           G   Q + +  P+EEGKKK   L DF  G P
Sbjct: 115 GSTDQGKTSAVPKEEGKKKQWCLEDFEIGRP 145



to top

>GMIP_MOUSE (Q6PGG2) GEM-interacting protein (GMIP)|
          Length = 971

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +2

Query: 38  PREEGKKKLGFLRDFLPGAPPIPCRSSC 121
           P E G++   F+R   PGAPP P  + C
Sbjct: 342 PFEPGQRYQEFVRTLQPGAPPPPSPAFC 369



to top

>PIN3A_ORYSA (Q5VP70) Probable auxin efflux carrier component 3a (OsPIN3a)|
          Length = 618

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 11/18 (61%), Positives = 15/18 (83%)
 Frame = -1

Query: 174 LAGLSSWLRVPNPTKAPR 121
           LAGL++W R+P+ T APR
Sbjct: 83  LAGLAAWSRLPSRTGAPR 100



to top

>PAK1_MOUSE (O88643) Serine/threonine-protein kinase PAK 1 (EC 2.7.11.1)|
           (p21-activated kinase 1) (PAK-1) (P65-PAK) (Alpha-PAK)
           (CDC42/RAC effector kinase PAK-A)
          Length = 545

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +2

Query: 20  TEPNPPPREEGKKKLGFLRDFLPG 91
           ++P PP  EE KKK  F R  LPG
Sbjct: 38  SKPLPPNPEEKKKKDRFYRSILPG 61



to top

>PAK1_HUMAN (Q13153) Serine/threonine-protein kinase PAK 1 (EC 2.7.11.1)|
           (p21-activated kinase 1) (PAK-1) (P65-PAK) (Alpha-PAK)
          Length = 545

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 13/24 (54%), Positives = 15/24 (62%)
 Frame = +2

Query: 20  TEPNPPPREEGKKKLGFLRDFLPG 91
           ++P PP  EE KKK  F R  LPG
Sbjct: 38  SKPLPPNPEEKKKKDRFYRSILPG 61



to top

>RELB_MOUSE (Q04863) Transcription factor RelB|
          Length = 558

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 14/30 (46%), Positives = 18/30 (60%)
 Frame = +2

Query: 2   LGERSQTEPNPPPREEGKKKLGFLRDFLPG 91
           LGE S ++P+    +  KKK  FL  FLPG
Sbjct: 397 LGELSSSDPHGIESKRRKKKPVFLDHFLPG 426



to top

>CNTRB_HUMAN (Q8N137) Centrobin (LYST-interacting protein 8)|
          Length = 903

 Score = 27.3 bits (59), Expect = 10.0
 Identities = 11/15 (73%), Positives = 12/15 (80%)
 Frame = +2

Query: 74  RDFLPGAPPIPCRSS 118
           RD LPGAPP+ C SS
Sbjct: 620 RDELPGAPPVLCSSS 634


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 30,238,659
Number of Sequences: 219361
Number of extensions: 463236
Number of successful extensions: 1622
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1512
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1621
length of database: 80,573,946
effective HSP length: 79
effective length of database: 63,244,427
effective search space used: 1517866248
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top