ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl42c03
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|AC121810.3| Mus musculus BAC clone RP23-453G13 from chromosom... 40 3.3
2gb|AC121838.2| Mus musculus BAC clone RP24-74O18 from 1, complet... 40 3.3
3gb|AC138565.3| Gallus gallus clone TAM31-10L3, complete sequence 40 3.3

>gb|AC121810.3| Mus musculus BAC clone RP23-453G13 from chromosome 1, complete sequence
          Length = 208102

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 63    gatcccttcttttccctttc 82
             ||||||||||||||||||||
Sbjct: 22840 gatcccttcttttccctttc 22859



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>gb|AC121838.2| Mus musculus BAC clone RP24-74O18 from 1, complete sequence
          Length = 180961

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 63   gatcccttcttttccctttc 82
            ||||||||||||||||||||
Sbjct: 6585 gatcccttcttttccctttc 6566



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>gb|AC138565.3| Gallus gallus clone TAM31-10L3, complete sequence
          Length = 174604

 Score = 40.1 bits (20), Expect = 3.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 67     ccttcttttccctttcagct 86
              ||||||||||||||||||||
Sbjct: 159432 ccttcttttccctttcagct 159451


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,838,598
Number of Sequences: 3902068
Number of extensions: 1838598
Number of successful extensions: 34922
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34916
Number of HSP's gapped (non-prelim): 6
length of query: 258
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 236
effective length of database: 17,147,199,772
effective search space: 4046739146192
effective search space used: 4046739146192
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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