ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl42c02
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1gb|M95746.1|WHTSTPCDN Wheat (clone p80k-16) initiation factor is... 186 2e-44
2gb|M95747.1|WHTIF4F82B Wheat (clone p80k-34) initiation factor i... 186 2e-44
3gb|AC103849.3| Homo sapiens chromosome 8, clone RP11-75H14, comp... 40 2.9
4gb|AC107952.5| Homo sapiens chromosome 8, clone RP11-140I16, com... 40 2.9

>gb|M95746.1|WHTSTPCDN Wheat (clone p80k-16) initiation factor isozyme 4F p82 subunit mRNA
           sequence
          Length = 2863

 Score =  186 bits (94), Expect = 2e-44
 Identities = 112/118 (94%)
 Strand = Plus / Plus

                                                                       
Query: 73  ccgcgatttcctccccggcgccccgccgattccctgtcgatcgagctgccgcggtgcctt 132
           |||||||||||||| ||||  ||||||||||||||||||||||||||| |||||||||||
Sbjct: 1   ccgcgatttcctcctcggccgcccgccgattccctgtcgatcgagctgtcgcggtgcctt 60

                                                                     
Query: 133 ggtcgggttcgggaccctcagccatgacgacagaccagccagtgatcagcctgcgccc 190
           |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ggtcggattcggcaccctcagccatgacgacagaccagccagtgatcagcctgcgccc 118



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>gb|M95747.1|WHTIF4F82B Wheat (clone p80k-34) initiation factor isozyme 4F p82 subunit
           mRNA, complete cds
          Length = 2887

 Score =  186 bits (94), Expect = 2e-44
 Identities = 112/118 (94%)
 Strand = Plus / Plus

                                                                       
Query: 73  ccgcgatttcctccccggcgccccgccgattccctgtcgatcgagctgccgcggtgcctt 132
           |||||||||||||| ||||  ||||||||||||||||||||||||||| |||||||||||
Sbjct: 1   ccgcgatttcctcctcggccgcccgccgattccctgtcgatcgagctgtcgcggtgcctt 60

                                                                     
Query: 133 ggtcgggttcgggaccctcagccatgacgacagaccagccagtgatcagcctgcgccc 190
           |||||| ||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ggtcggattcggcaccctcagccatgacgacagaccagccagtgatcagcctgcgccc 118



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>gb|AC103849.3| Homo sapiens chromosome 8, clone RP11-75H14, complete sequence
          Length = 147107

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 161   gacagaccagccagtgatca 180
             ||||||||||||||||||||
Sbjct: 15395 gacagaccagccagtgatca 15376



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>gb|AC107952.5| Homo sapiens chromosome 8, clone RP11-140I16, complete sequence
          Length = 142102

 Score = 40.1 bits (20), Expect = 2.9
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 161    gacagaccagccagtgatca 180
              ||||||||||||||||||||
Sbjct: 106152 gacagaccagccagtgatca 106133


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 961,008
Number of Sequences: 3902068
Number of extensions: 961008
Number of successful extensions: 15913
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 15909
Number of HSP's gapped (non-prelim): 4
length of query: 229
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 207
effective length of database: 17,147,199,772
effective search space: 3549470352804
effective search space used: 3549470352804
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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