ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl42b12 |
|---|---|
| Clone Library Name | barley_pub |
>COPB_DROME (P45437) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 964 Score = 33.9 bits (76), Expect = 0.11 Identities = 15/44 (34%), Positives = 23/44 (52%) Frame = +3 Query: 126 PCTLLVHFDKGSAAMANEIKADLEGSDVAAKVEAMKRAVMLLLN 257 PC +++ ++K DLE D K+E +KR + LLLN Sbjct: 6 PCYTIINSPDLEVTNEMQLKRDLEKGDTNVKIETLKRVIKLLLN 49
>COPB_RAT (P23514) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 32.0 bits (71), Expect = 0.43 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Frame = +3 Query: 114 AMDKPCTLLVHFDKGSAAMAN-EIKADLEGSDVAAKVEAMKRAVMLLLN 257 A + C L++ S + +K DLE DV +K EA+K+ ++++LN Sbjct: 3 AAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILN 51
>COPB_MOUSE (Q9JIF7) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 32.0 bits (71), Expect = 0.43 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Frame = +3 Query: 114 AMDKPCTLLVHFDKGSAAMAN-EIKADLEGSDVAAKVEAMKRAVMLLLN 257 A + C L++ S + +K DLE DV +K EA+K+ ++++LN Sbjct: 3 AAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILN 51
>COPB_HUMAN (P53618) Coatomer subunit beta (Beta-coat protein) (Beta-COP)| Length = 953 Score = 32.0 bits (71), Expect = 0.43 Identities = 16/49 (32%), Positives = 28/49 (57%), Gaps = 1/49 (2%) Frame = +3 Query: 114 AMDKPCTLLVHFDKGSAAMAN-EIKADLEGSDVAAKVEAMKRAVMLLLN 257 A + C L++ S + +K DLE DV +K EA+K+ ++++LN Sbjct: 3 AAENVCYTLINVPMDSEPPSEISLKNDLEKGDVKSKTEALKKVIIMILN 51
>DAB1_MACFA (Q9BGX5) Disabled homolog 1| Length = 555 Score = 29.3 bits (64), Expect = 2.8 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 6/27 (22%) Frame = +1 Query: 4 HSPPLPAPRSRSTS------AADPTTD 66 +SPP PAPR S S A+DPTTD Sbjct: 480 NSPPTPAPRQSSPSKSSASHASDPTTD 506
>DAB1_HUMAN (O75553) Disabled homolog 1| Length = 555 Score = 29.3 bits (64), Expect = 2.8 Identities = 15/27 (55%), Positives = 17/27 (62%), Gaps = 6/27 (22%) Frame = +1 Query: 4 HSPPLPAPRSRSTS------AADPTTD 66 +SPP PAPR S S A+DPTTD Sbjct: 480 NSPPTPAPRQSSPSKSSASHASDPTTD 506
>DNAE2_SYMTH (Q67N73) Error-prone DNA polymerase (EC 2.7.7.7)| Length = 1085 Score = 28.5 bits (62), Expect = 4.8 Identities = 19/58 (32%), Positives = 29/58 (50%) Frame = -1 Query: 182 DLIRHGGGALVEVD*QRTRLVHGAGSAVHPRRRATACGVSVVGSAAEVDRDLGAGRGG 9 DL+R GGA+ + L GA +H RRA V+ + A + ++ GAG+ G Sbjct: 868 DLVRRTGGAVPRGPLEALVLA-GAFDRLHSNRRAALWQVAHLLEAERIRQERGAGQAG 924
>NU2C_PROMM (Q7V626) NAD(P)H-quinone oxidoreductase chain 2 (EC 1.6.5.-)| (NAD(P)H dehydrogenase I, chain 2) (NDH-1, chain 2) Length = 523 Score = 28.1 bits (61), Expect = 6.2 Identities = 16/46 (34%), Positives = 23/46 (50%) Frame = -2 Query: 217 LAATSLPSRSALISFAMAAEPLSKWTSSVHGLSMAPDLPCTRAGGR 80 LAA SL A ++F +AA P +WT V+ S P + G + Sbjct: 222 LAALSLVFVLATVAFKIAAVPFHQWTPDVYEGSPTPVVAFLSVGSK 267
>YNP2_YEAST (P53901) Hypothetical 46.2 kDa protein in YCK2-RPC8 intergenic| region Length = 409 Score = 28.1 bits (61), Expect = 6.2 Identities = 14/32 (43%), Positives = 18/32 (56%) Frame = +3 Query: 3 PLPPSSGSQISIHLRRRSNHRYPTRRRPPARV 98 PLP +S S + R N PTR+RPP R+ Sbjct: 381 PLPTTSNSNFN----SRKNSMSPTRKRPPPRL 408
>SOS2_HUMAN (Q07890) Son of sevenless homolog 2 (SOS-2)| Length = 1332 Score = 28.1 bits (61), Expect = 6.2 Identities = 15/29 (51%), Positives = 15/29 (51%) Frame = +1 Query: 4 HSPPLPAPRSRSTSAADPTTDTPHAVALR 90 HSPP P PR DP DTP V LR Sbjct: 1201 HSPPPPPPR-------DPLPDTPPPVPLR 1222
>S27A3_HUMAN (Q5K4L6) Long-chain fatty acid transport protein 3 (EC 6.2.1.-)| (Fatty acid transport protein 3) (FATP-3) (Very long-chain acyl-CoA synthetase homolog 3) (VLCS-3) (Solute carrier family 27 member 3) Length = 683 Score = 28.1 bits (61), Expect = 6.2 Identities = 16/36 (44%), Positives = 17/36 (47%) Frame = -1 Query: 116 GAGSAVHPRRRATACGVSVVGSAAEVDRDLGAGRGG 9 G GSA R A G + GS AE GA RGG Sbjct: 123 GEGSAGEGERAAPGAGDAAAGSGAEFAGGDGAARGG 158
>SMG1_MOUSE (Q8BKX6) Serine/threonine-protein kinase SMG1 (EC 2.7.11.1) (SMG-1)| Length = 3658 Score = 28.1 bits (61), Expect = 6.2 Identities = 11/34 (32%), Positives = 21/34 (61%) Frame = -1 Query: 149 EVD*QRTRLVHGAGSAVHPRRRATACGVSVVGSA 48 E+D ++T+L++ AG + H ++C +S SA Sbjct: 1480 ELDIEKTKLLYTAGQSTHAMEMLSSCAISFCKSA 1513
>IRS1_XENTR (Q6P4Y6) Insulin receptor substrate 1 (IRS-1)| Length = 654 Score = 27.7 bits (60), Expect = 8.1 Identities = 17/45 (37%), Positives = 20/45 (44%), Gaps = 7/45 (15%) Frame = +3 Query: 9 PPSSGSQISIHLR-------RRSNHRYPTRRRPPARVHGRSGAMD 122 PPS G +SIH R R +HR P R R HG + D Sbjct: 557 PPSPGEYVSIHFRAPPEEDLREGSHRCPKR----VRFHGGAALGD 597
>PPIL4_ASPOR (Q2U256) Peptidyl-prolyl cis-trans isomerase-like 4 (EC 5.2.1.8)| (PPIase) (Rotamase) Length = 461 Score = 27.7 bits (60), Expect = 8.1 Identities = 13/23 (56%), Positives = 15/23 (65%) Frame = +3 Query: 48 RRSNHRYPTRRRPPARVHGRSGA 116 RR ++R P RRRP R H RS A Sbjct: 409 RRDSYRDPYRRRPGDRSHSRSPA 431
>SOCS1_MOUSE (O35716) Suppressor of cytokine signaling 1 (SOCS-1) (JAK-binding| protein) (JAB) (STAT-induced STAT inhibitor 1) (SSI-1) Length = 212 Score = 27.7 bits (60), Expect = 8.1 Identities = 14/39 (35%), Positives = 19/39 (48%) Frame = +1 Query: 1 NHSPPLPAPRSRSTSAADPTTDTPHAVALRRGCTADPAP 117 N P PR RS ++ ++ +P A R C A PAP Sbjct: 11 NAISPAAEPRRRSEPSSSSSSSSPAAPVRPRPCPAVPAP 49 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.130 0.468 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 28,690,993 Number of Sequences: 219361 Number of extensions: 490723 Number of successful extensions: 2434 Number of sequences better than 10.0: 15 Number of HSP's better than 10.0 without gapping: 2320 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2431 length of database: 80,573,946 effective HSP length: 61 effective length of database: 67,192,925 effective search space used: 1612630200 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
