ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl42b11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1EXOC4_ARATH (Q93YU5) Probable exocyst complex component 4 (Exocy... 100 2e-21
2BAT2_HUMAN (P48634) Large proline-rich protein BAT2 (HLA-B-assoc... 32 0.43
3BAT2_MACMU (Q5TM26) Large proline-rich protein BAT2 (HLA-B-assoc... 32 0.43
4MSG5_YEAST (P38590) Tyrosine-protein phosphatase MSG5 (EC 3.1.3.48) 31 0.73
5NMDE4_RAT (Q62645) Glutamate [NMDA] receptor subunit epsilon 4 p... 31 0.95
6NMDE4_MOUSE (Q03391) Glutamate [NMDA] receptor subunit epsilon 4... 31 0.95
7BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associa... 31 0.95
8BAT2_MOUSE (Q7TSC1) Large proline-rich protein BAT2 (HLA-B-assoc... 31 0.95
9VGLC_BHV1C (P14378) Glycoprotein GIII precursor 30 1.6
10PDZK3_HUMAN (O15018) PDZ domain-containing protein 3 (PDZ domain... 28 4.7
11ZDHC8_PANTR (Q2THX0) Probable palmitoyltransferase ZDHHC8 (EC 2.... 28 4.7
12K1949_PIG (Q767M0) Protein KIAA1949 homolog 28 6.2
13BEGIN_SHEEP (Q6R6L0) Brain-enriched guanylate kinase-associated ... 28 8.1
14AROA_RHILO (Q98CC1) 3-phosphoshikimate 1-carboxyvinyltransferase... 28 8.1
15B3AT_RAT (P23562) Band 3 anion transport protein (Anion exchange... 28 8.1
16SH22A_HUMAN (Q9NP31) SH2 domain protein 2A (T cell-specific adap... 28 8.1

>EXOC4_ARATH (Q93YU5) Probable exocyst complex component 4 (Exocyst complex|
           component Sec8)
          Length = 1053

 Score = 99.8 bits (247), Expect = 2e-21
 Identities = 45/61 (73%), Positives = 54/61 (88%)
 Frame = +1

Query: 79  GIFDGLPIPPGKSYLKEGLSRIDEGWAAARFDSLPHVVHILTSKDRDGEIQFLKEQSDLI 258
           GIF+GLP+P  K+YL+E L+RIDE WAAARFDSLPHVVHILTSKDR+ +I  LKEQSD++
Sbjct: 2   GIFNGLPVPSDKTYLREELARIDESWAAARFDSLPHVVHILTSKDREADIHILKEQSDVV 61

Query: 259 E 261
           E
Sbjct: 62  E 62



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>BAT2_HUMAN (P48634) Large proline-rich protein BAT2 (HLA-B-associated transcript|
            2)
          Length = 2157

 Score = 32.0 bits (71), Expect = 0.43
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +3

Query: 6    PVSPDLAPLPGSRLAVGNDEPPPAWHLRRPPNSARQILP 122
            P +P  AP P S L VG    PP+  +R PP  A ++LP
Sbjct: 1997 PPAPPPAPPPLSLLPVGPALQPPSLAVRPPPAPATRVLP 2035



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>BAT2_MACMU (Q5TM26) Large proline-rich protein BAT2 (HLA-B-associated transcript|
            2)
          Length = 2160

 Score = 32.0 bits (71), Expect = 0.43
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +3

Query: 6    PVSPDLAPLPGSRLAVGNDEPPPAWHLRRPPNSARQILP 122
            P +P  AP P S L VG    PP+  +R PP  A ++LP
Sbjct: 2000 PPAPPPAPPPLSLLPVGPALQPPSLAVRPPPAPATRVLP 2038



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>MSG5_YEAST (P38590) Tyrosine-protein phosphatase MSG5 (EC 3.1.3.48)|
          Length = 489

 Score = 31.2 bits (69), Expect = 0.73
 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 12/90 (13%)
 Frame = +1

Query: 25  RLSPGPASPSVTMNRHRRGIFDGLP-------IPPG---KSYLKEGLSRIDEGWAAARFD 174
           ++SP P  PS++M R    I+  LP       + P    KS     +S++      + F 
Sbjct: 83  KVSPRPTPPSLSMRRSEASIYT-LPTSLKNRTVSPSVYTKSSTVSSISKLSSSSPLSSFS 141

Query: 175 SLPHV--VHILTSKDRDGEIQFLKEQSDLI 258
             PH+  VH L+ K +D +++ ++ +S  I
Sbjct: 142 EKPHLNRVHSLSVKTKDLKLKGIRGRSQTI 171



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>NMDE4_RAT (Q62645) Glutamate [NMDA] receptor subunit epsilon 4 precursor|
            (N-methyl D-aspartate receptor subtype 2D) (NR2D)
            (NMDAR2D)
          Length = 1323

 Score = 30.8 bits (68), Expect = 0.95
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = +3

Query: 12   SPDLAPLPGSRLAVGNDEPPPAWHLRRPPNSARQILPEGRAVAD--RRGMGSG 164
            S + AP P          P PA+   RPP      +P  RA AD  RR  G+G
Sbjct: 895  SAEAAPPPAKPPPPPQPLPSPAYPAARPPPGPAPFVPRERAAADRWRRAKGTG 947



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>NMDE4_MOUSE (Q03391) Glutamate [NMDA] receptor subunit epsilon 4 precursor|
            (N-methyl D-aspartate receptor subtype 2D) (NR2D)
            (NMDAR2D)
          Length = 1323

 Score = 30.8 bits (68), Expect = 0.95
 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 2/53 (3%)
 Frame = +3

Query: 12   SPDLAPLPGSRLAVGNDEPPPAWHLRRPPNSARQILPEGRAVAD--RRGMGSG 164
            S + AP P          P PA+   RPP      +P  RA AD  RR  G+G
Sbjct: 895  SAEAAPPPAKPPPPPQPLPSPAYPAARPPPGPAPFVPRERAAADRWRRAKGTG 947



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>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated transcript|
            2)
          Length = 2161

 Score = 30.8 bits (68), Expect = 0.95
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +3

Query: 6    PVSPDLAPLPGSRLAVGNDEPPPAWHLRRPPNSARQILP 122
            P +P  AP P S L VG    PP   +R PP  A ++LP
Sbjct: 2001 PPAPPPAPPPLSLLPVGPALQPPNLAVRPPPAPAARVLP 2039



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>BAT2_MOUSE (Q7TSC1) Large proline-rich protein BAT2 (HLA-B-associated transcript|
            2)
          Length = 2158

 Score = 30.8 bits (68), Expect = 0.95
 Identities = 17/39 (43%), Positives = 21/39 (53%)
 Frame = +3

Query: 6    PVSPDLAPLPGSRLAVGNDEPPPAWHLRRPPNSARQILP 122
            P +P  AP P S L VG    PP   +R PP  A ++LP
Sbjct: 1998 PPAPPPAPPPLSLLPVGPALQPPNLAVRPPPAPAARVLP 2036



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>VGLC_BHV1C (P14378) Glycoprotein GIII precursor|
          Length = 521

 Score = 30.0 bits (66), Expect = 1.6
 Identities = 22/64 (34%), Positives = 25/64 (39%), Gaps = 10/64 (15%)
 Frame = +3

Query: 3   SPVSPDLAP---LPGSRLAVGNDEPP-------PAWHLRRPPNSARQILPEGRAVADRRG 152
           +P SPD  P    PG+   VG  EPP       P  +   PP       P G   A R G
Sbjct: 57  TPNSPDATPEDSTPGATTPVGTPEPPSVSEHDPPVTNSTPPPAPPEDGRPGGAGNASRDG 116

Query: 153 MGSG 164
             SG
Sbjct: 117 RPSG 120



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>PDZK3_HUMAN (O15018) PDZ domain-containing protein 3 (PDZ domain-containing|
            protein 2) (Activated in prostate cancer protein)
          Length = 2839

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 5/49 (10%)
 Frame = -3

Query: 151  PRRSATALPSGKICLAELGGRRRCHAGGG-----SSLPTARRDPGRGAR 20
            PRRS    P+G +   E GG R C  G G     +  P++  D G  A+
Sbjct: 2518 PRRSPGP-PAGGVSCPEKGGNRACPGGSGPKTSAAETPSSASDTGEAAQ 2565



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>ZDHC8_PANTR (Q2THX0) Probable palmitoyltransferase ZDHHC8 (EC 2.3.1.-) (Zinc|
           finger DHHC domain-containing protein 8) (DHHC-8)
          Length = 765

 Score = 28.5 bits (62), Expect = 4.7
 Identities = 14/40 (35%), Positives = 18/40 (45%)
 Frame = +1

Query: 4   AQSLQISRLSPGPASPSVTMNRHRRGIFDGLPIPPGKSYL 123
           + SLQ  + S     P  +   HR     GLP PPG  +L
Sbjct: 643 SSSLQADQASSNAPGPRPSSGSHRSPARQGLPSPPGTPHL 682



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>K1949_PIG (Q767M0) Protein KIAA1949 homolog|
          Length = 618

 Score = 28.1 bits (61), Expect = 6.2
 Identities = 27/89 (30%), Positives = 33/89 (37%), Gaps = 5/89 (5%)
 Frame = +3

Query: 3   SPVSPDLAPLPGSRLA---VGNDEPPPAWHLRRPPNSARQILPEGRAVADR--RGMGSGX 167
           SP+ P+ A   GSR      G   PPPA  L  PP +     P G  +  R   G+ +G 
Sbjct: 406 SPLPPEDAGTGGSRQQEEEAGELRPPPAAPLSPPPPAPPAPQPPGDPLMSRLFYGVKAGP 465

Query: 168 XXXXXXXXXHPHLQGPRWRDPVPQGAERP 254
                    H     PR R   P  A  P
Sbjct: 466 GVGAPRRSGHTFTVNPR-RSAPPAAAATP 493



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>BEGIN_SHEEP (Q6R6L0) Brain-enriched guanylate kinase-associated protein|
          Length = 653

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%)
 Frame = +3

Query: 6   PVSPDLAPL-PGSRLAVGNDEPPPAWHLRRPPNSARQILPEGR 131
           P  P   PL PG + A+    PP  W+LR  P SAR +   GR
Sbjct: 430 PGEPFRFPLSPGPQPAL---MPPNLWNLRAKPGSARLVAGAGR 469



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>AROA_RHILO (Q98CC1) 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19)|
           (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP
           synthase) (EPSPS)
          Length = 452

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 8/48 (16%)
 Frame = -1

Query: 207 GGEDVHDVRQR--------VEPRRCPSLVDPRQPFLQVRFAWRNWEAV 88
           GGEDV D+R R        V P R PS++D   P L V  ++   E +
Sbjct: 298 GGEDVADLRVRYSELKGVAVPPERAPSMID-EYPVLAVAASFAEGETL 344



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>B3AT_RAT (P23562) Band 3 anion transport protein (Anion exchange protein 1)|
           (AE 1) (Solute carrier family 4 member 1) (CD233
           antigen)
          Length = 927

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +3

Query: 54  GNDEPPPAWHLRRPPNSARQILPEGRA 134
           G++EP P+  L+ PPNS   ++  GRA
Sbjct: 221 GSEEPSPSGILKIPPNSETTLVLVGRA 247



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>SH22A_HUMAN (Q9NP31) SH2 domain protein 2A (T cell-specific adapter protein)|
           (TSAd) (VEGF receptor-associated protein) (SH2
           domain-containing adapter protein)
          Length = 389

 Score = 27.7 bits (60), Expect = 8.1
 Identities = 10/21 (47%), Positives = 14/21 (66%)
 Frame = +3

Query: 63  EPPPAWHLRRPPNSARQILPE 125
           +PPPAW    P N +RQ+L +
Sbjct: 357 QPPPAWRHTLPHNLSRQVLQD 377


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.317    0.138    0.403 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 39,792,117
Number of Sequences: 219361
Number of extensions: 898300
Number of successful extensions: 3391
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 3255
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3384
length of database: 80,573,946
effective HSP length: 62
effective length of database: 66,973,564
effective search space used: 1607365536
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
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