Clone Name | bastl42b11 |
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Clone Library Name | barley_pub |
>EXOC4_ARATH (Q93YU5) Probable exocyst complex component 4 (Exocyst complex| component Sec8) Length = 1053 Score = 99.8 bits (247), Expect = 2e-21 Identities = 45/61 (73%), Positives = 54/61 (88%) Frame = +1 Query: 79 GIFDGLPIPPGKSYLKEGLSRIDEGWAAARFDSLPHVVHILTSKDRDGEIQFLKEQSDLI 258 GIF+GLP+P K+YL+E L+RIDE WAAARFDSLPHVVHILTSKDR+ +I LKEQSD++ Sbjct: 2 GIFNGLPVPSDKTYLREELARIDESWAAARFDSLPHVVHILTSKDREADIHILKEQSDVV 61 Query: 259 E 261 E Sbjct: 62 E 62
>BAT2_HUMAN (P48634) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2157 Score = 32.0 bits (71), Expect = 0.43 Identities = 17/39 (43%), Positives = 22/39 (56%) Frame = +3 Query: 6 PVSPDLAPLPGSRLAVGNDEPPPAWHLRRPPNSARQILP 122 P +P AP P S L VG PP+ +R PP A ++LP Sbjct: 1997 PPAPPPAPPPLSLLPVGPALQPPSLAVRPPPAPATRVLP 2035
>BAT2_MACMU (Q5TM26) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2160 Score = 32.0 bits (71), Expect = 0.43 Identities = 17/39 (43%), Positives = 22/39 (56%) Frame = +3 Query: 6 PVSPDLAPLPGSRLAVGNDEPPPAWHLRRPPNSARQILP 122 P +P AP P S L VG PP+ +R PP A ++LP Sbjct: 2000 PPAPPPAPPPLSLLPVGPALQPPSLAVRPPPAPATRVLP 2038
>MSG5_YEAST (P38590) Tyrosine-protein phosphatase MSG5 (EC 3.1.3.48)| Length = 489 Score = 31.2 bits (69), Expect = 0.73 Identities = 24/90 (26%), Positives = 43/90 (47%), Gaps = 12/90 (13%) Frame = +1 Query: 25 RLSPGPASPSVTMNRHRRGIFDGLP-------IPPG---KSYLKEGLSRIDEGWAAARFD 174 ++SP P PS++M R I+ LP + P KS +S++ + F Sbjct: 83 KVSPRPTPPSLSMRRSEASIYT-LPTSLKNRTVSPSVYTKSSTVSSISKLSSSSPLSSFS 141 Query: 175 SLPHV--VHILTSKDRDGEIQFLKEQSDLI 258 PH+ VH L+ K +D +++ ++ +S I Sbjct: 142 EKPHLNRVHSLSVKTKDLKLKGIRGRSQTI 171
>NMDE4_RAT (Q62645) Glutamate [NMDA] receptor subunit epsilon 4 precursor| (N-methyl D-aspartate receptor subtype 2D) (NR2D) (NMDAR2D) Length = 1323 Score = 30.8 bits (68), Expect = 0.95 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 2/53 (3%) Frame = +3 Query: 12 SPDLAPLPGSRLAVGNDEPPPAWHLRRPPNSARQILPEGRAVAD--RRGMGSG 164 S + AP P P PA+ RPP +P RA AD RR G+G Sbjct: 895 SAEAAPPPAKPPPPPQPLPSPAYPAARPPPGPAPFVPRERAAADRWRRAKGTG 947
>NMDE4_MOUSE (Q03391) Glutamate [NMDA] receptor subunit epsilon 4 precursor| (N-methyl D-aspartate receptor subtype 2D) (NR2D) (NMDAR2D) Length = 1323 Score = 30.8 bits (68), Expect = 0.95 Identities = 19/53 (35%), Positives = 23/53 (43%), Gaps = 2/53 (3%) Frame = +3 Query: 12 SPDLAPLPGSRLAVGNDEPPPAWHLRRPPNSARQILPEGRAVAD--RRGMGSG 164 S + AP P P PA+ RPP +P RA AD RR G+G Sbjct: 895 SAEAAPPPAKPPPPPQPLPSPAYPAARPPPGPAPFVPRERAAADRWRRAKGTG 947
>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2161 Score = 30.8 bits (68), Expect = 0.95 Identities = 17/39 (43%), Positives = 21/39 (53%) Frame = +3 Query: 6 PVSPDLAPLPGSRLAVGNDEPPPAWHLRRPPNSARQILP 122 P +P AP P S L VG PP +R PP A ++LP Sbjct: 2001 PPAPPPAPPPLSLLPVGPALQPPNLAVRPPPAPAARVLP 2039
>BAT2_MOUSE (Q7TSC1) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2158 Score = 30.8 bits (68), Expect = 0.95 Identities = 17/39 (43%), Positives = 21/39 (53%) Frame = +3 Query: 6 PVSPDLAPLPGSRLAVGNDEPPPAWHLRRPPNSARQILP 122 P +P AP P S L VG PP +R PP A ++LP Sbjct: 1998 PPAPPPAPPPLSLLPVGPALQPPNLAVRPPPAPAARVLP 2036
>VGLC_BHV1C (P14378) Glycoprotein GIII precursor| Length = 521 Score = 30.0 bits (66), Expect = 1.6 Identities = 22/64 (34%), Positives = 25/64 (39%), Gaps = 10/64 (15%) Frame = +3 Query: 3 SPVSPDLAP---LPGSRLAVGNDEPP-------PAWHLRRPPNSARQILPEGRAVADRRG 152 +P SPD P PG+ VG EPP P + PP P G A R G Sbjct: 57 TPNSPDATPEDSTPGATTPVGTPEPPSVSEHDPPVTNSTPPPAPPEDGRPGGAGNASRDG 116 Query: 153 MGSG 164 SG Sbjct: 117 RPSG 120
>PDZK3_HUMAN (O15018) PDZ domain-containing protein 3 (PDZ domain-containing| protein 2) (Activated in prostate cancer protein) Length = 2839 Score = 28.5 bits (62), Expect = 4.7 Identities = 17/49 (34%), Positives = 23/49 (46%), Gaps = 5/49 (10%) Frame = -3 Query: 151 PRRSATALPSGKICLAELGGRRRCHAGGG-----SSLPTARRDPGRGAR 20 PRRS P+G + E GG R C G G + P++ D G A+ Sbjct: 2518 PRRSPGP-PAGGVSCPEKGGNRACPGGSGPKTSAAETPSSASDTGEAAQ 2565
>ZDHC8_PANTR (Q2THX0) Probable palmitoyltransferase ZDHHC8 (EC 2.3.1.-) (Zinc| finger DHHC domain-containing protein 8) (DHHC-8) Length = 765 Score = 28.5 bits (62), Expect = 4.7 Identities = 14/40 (35%), Positives = 18/40 (45%) Frame = +1 Query: 4 AQSLQISRLSPGPASPSVTMNRHRRGIFDGLPIPPGKSYL 123 + SLQ + S P + HR GLP PPG +L Sbjct: 643 SSSLQADQASSNAPGPRPSSGSHRSPARQGLPSPPGTPHL 682
>K1949_PIG (Q767M0) Protein KIAA1949 homolog| Length = 618 Score = 28.1 bits (61), Expect = 6.2 Identities = 27/89 (30%), Positives = 33/89 (37%), Gaps = 5/89 (5%) Frame = +3 Query: 3 SPVSPDLAPLPGSRLA---VGNDEPPPAWHLRRPPNSARQILPEGRAVADR--RGMGSGX 167 SP+ P+ A GSR G PPPA L PP + P G + R G+ +G Sbjct: 406 SPLPPEDAGTGGSRQQEEEAGELRPPPAAPLSPPPPAPPAPQPPGDPLMSRLFYGVKAGP 465 Query: 168 XXXXXXXXXHPHLQGPRWRDPVPQGAERP 254 H PR R P A P Sbjct: 466 GVGAPRRSGHTFTVNPR-RSAPPAAAATP 493
>BEGIN_SHEEP (Q6R6L0) Brain-enriched guanylate kinase-associated protein| Length = 653 Score = 27.7 bits (60), Expect = 8.1 Identities = 18/43 (41%), Positives = 22/43 (51%), Gaps = 1/43 (2%) Frame = +3 Query: 6 PVSPDLAPL-PGSRLAVGNDEPPPAWHLRRPPNSARQILPEGR 131 P P PL PG + A+ PP W+LR P SAR + GR Sbjct: 430 PGEPFRFPLSPGPQPAL---MPPNLWNLRAKPGSARLVAGAGR 469
>AROA_RHILO (Q98CC1) 3-phosphoshikimate 1-carboxyvinyltransferase (EC 2.5.1.19)| (5-enolpyruvylshikimate-3-phosphate synthase) (EPSP synthase) (EPSPS) Length = 452 Score = 27.7 bits (60), Expect = 8.1 Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 8/48 (16%) Frame = -1 Query: 207 GGEDVHDVRQR--------VEPRRCPSLVDPRQPFLQVRFAWRNWEAV 88 GGEDV D+R R V P R PS++D P L V ++ E + Sbjct: 298 GGEDVADLRVRYSELKGVAVPPERAPSMID-EYPVLAVAASFAEGETL 344
>B3AT_RAT (P23562) Band 3 anion transport protein (Anion exchange protein 1)| (AE 1) (Solute carrier family 4 member 1) (CD233 antigen) Length = 927 Score = 27.7 bits (60), Expect = 8.1 Identities = 12/27 (44%), Positives = 18/27 (66%) Frame = +3 Query: 54 GNDEPPPAWHLRRPPNSARQILPEGRA 134 G++EP P+ L+ PPNS ++ GRA Sbjct: 221 GSEEPSPSGILKIPPNSETTLVLVGRA 247
>SH22A_HUMAN (Q9NP31) SH2 domain protein 2A (T cell-specific adapter protein)| (TSAd) (VEGF receptor-associated protein) (SH2 domain-containing adapter protein) Length = 389 Score = 27.7 bits (60), Expect = 8.1 Identities = 10/21 (47%), Positives = 14/21 (66%) Frame = +3 Query: 63 EPPPAWHLRRPPNSARQILPE 125 +PPPAW P N +RQ+L + Sbjct: 357 QPPPAWRHTLPHNLSRQVLQD 377 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.317 0.138 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 39,792,117 Number of Sequences: 219361 Number of extensions: 898300 Number of successful extensions: 3391 Number of sequences better than 10.0: 16 Number of HSP's better than 10.0 without gapping: 3255 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3384 length of database: 80,573,946 effective HSP length: 62 effective length of database: 66,973,564 effective search space used: 1607365536 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)