ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl42b09
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1SYV_ARATH (P93736) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--t... 41 0.001
2CAC1S_RABIT (P07293) Voltage-dependent L-type calcium channel al... 30 2.2
3MA205_DROME (P23226) 205 kDa microtubule-associated protein 30 2.9
4FTSZ_CAUCR (P52976) Cell division protein ftsZ 29 6.4

>SYV_ARATH (P93736) Valyl-tRNA synthetase (EC 6.1.1.9) (Valine--tRNA ligase)|
           (ValRS)
          Length = 1108

 Score = 41.2 bits (95), Expect = 0.001
 Identities = 16/25 (64%), Positives = 21/25 (84%)
 Frame = +2

Query: 356 ADDENPEDFIDPETPSGQKKSLAPQ 430
           A +ENPEDF+DPETP G++K L+ Q
Sbjct: 111 ASEENPEDFVDPETPLGERKRLSSQ 135



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>CAC1S_RABIT (P07293) Voltage-dependent L-type calcium channel alpha-1S subunit|
            (Voltage-gated calcium channel alpha subunit Cav1.1)
            (Calcium channel, L type, alpha-1 polypeptide, isoform 3,
            skeletal muscle)
          Length = 1873

 Score = 30.4 bits (67), Expect = 2.2
 Identities = 13/25 (52%), Positives = 14/25 (56%)
 Frame = -3

Query: 99   APPGPCAGACLDVAEHGESRVSLTG 25
            APP PC     D  E G+ R SLTG
Sbjct: 1736 APPAPCQQPSTDPPERGQRRTSLTG 1760



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>MA205_DROME (P23226) 205 kDa microtubule-associated protein|
          Length = 1185

 Score = 30.0 bits (66), Expect = 2.9
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = +2

Query: 89   PGGATTRTTRSLTMEKPVAQAPEKAAS 169
            PG ++T TT SL    P+  AP KAAS
Sbjct: 1071 PGSSSTTTTSSLRKSSPLKAAPGKAAS 1097



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>FTSZ_CAUCR (P52976) Cell division protein ftsZ|
          Length = 508

 Score = 28.9 bits (63), Expect = 6.4
 Identities = 21/51 (41%), Positives = 27/51 (52%), Gaps = 2/51 (3%)
 Frame = +2

Query: 17  KP*PV-RDTLLSPCSA-TSKQAPAHGPGGATTRTTRSLTMEKPVAQAPEKA 163
           +P PV R+   +P  A TS+ AP   P   T R   +   E+PVA APE A
Sbjct: 328 EPKPVSRNISAAPLIAETSRPAPQPEPARPTARYEAARPAERPVAFAPEPA 378


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 35,671,581
Number of Sequences: 219361
Number of extensions: 400101
Number of successful extensions: 1366
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1344
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1366
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2851757076
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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