ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl42b07 |
|---|---|
| Clone Library Name | barley_pub |
>AKH2_MAIZE (P49080) Bifunctional aspartokinase/homoserine dehydrogenase 2,| chloroplast precursor (AK-HD 2) (AK-HSDH 2) [Includes: Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC 1.1.1.3)] Length = 917 Score = 138 bits (348), Expect(2) = 2e-33 Identities = 78/132 (59%), Positives = 91/132 (68%), Gaps = 5/132 (3%) Frame = +1 Query: 73 MRSLAVASPVPTAAAHRR-RLRPSASGREVISQCLKCEINQDRPLGA-LRLG---GNLPR 237 M+ LAV+ +P AAA R R R S+S RE + QC K E++QD LG LR+G G+L R Sbjct: 1 MQGLAVSCQLPPAAAAARWRPRASSSNREAVLQCWKYELSQDHYLGGPLRIGQSQGSLHR 60 Query: 238 HGSKNLLTPXXXXXXXXXXXXXTYLPKGDMWSVHKFGGTCMGTPQRIQNVADVVLGDSSE 417 H S N L P TYLPKGDMWSVHKFGGTCMGTP+RIQ VA++VLGDSSE Sbjct: 61 HRSTNFLRPAAAAISVEQDEVNTYLPKGDMWSVHKFGGTCMGTPKRIQCVANIVLGDSSE 120 Query: 418 RKLXIVSAMSKL 453 RKL IVSAMSK+ Sbjct: 121 RKLIIVSAMSKV 132 Score = 22.7 bits (47), Expect(2) = 2e-33 Identities = 9/11 (81%), Positives = 11/11 (100%) Frame = +3 Query: 447 QVTDMMYSLVQ 479 +VTDMMY+LVQ Sbjct: 131 KVTDMMYNLVQ 141
>AKH1_MAIZE (P49079) Bifunctional aspartokinase/homoserine dehydrogenase 1,| chloroplast precursor (AK-HD 1) (AK-HSDH 1) [Includes: Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC 1.1.1.3)] Length = 920 Score = 118 bits (295), Expect(2) = 1e-26 Identities = 71/135 (52%), Positives = 81/135 (60%), Gaps = 8/135 (5%) Frame = +1 Query: 73 MRSLAVASPVPTAAAHRRR---LRPSASGRE-VISQCLKCEINQDRPLGALRLGGNLPR- 237 MRSL VAS P AA RR L P+A+GR+ +C + E QD G+ LPR Sbjct: 1 MRSLTVASRHPGAAFSTRRRPLLHPAAAGRDSTFQRCWRWEKTQDSSFGSSLRTSRLPRT 60 Query: 238 -HGS--KNLLTPXXXXXXXXXXXXXTYLPKGDMWSVHKFGGTCMGTPQRIQNVADVVLGD 408 HG KNLL P LPKGDMWSVHKFGGTCMGT +RI NVAD+VL D Sbjct: 61 VHGDILKNLLAPTAGAVSVEQAEAIADLPKGDMWSVHKFGGTCMGTSERIHNVADIVLRD 120 Query: 409 SSERKLXIVSAMSKL 453 SERKL +VSAMSK+ Sbjct: 121 PSERKLVVVSAMSKV 135 Score = 20.8 bits (42), Expect(2) = 1e-26 Identities = 8/10 (80%), Positives = 10/10 (100%) Frame = +3 Query: 447 QVTDMMYSLV 476 +VTDMMY+LV Sbjct: 134 KVTDMMYNLV 143
>AKH_DAUCA (P37142) Bifunctional aspartokinase/homoserine dehydrogenase,| chloroplast precursor (AK-HD) (AK-HSDH) [Includes: Aspartokinase (EC 2.7.2.4); Homoserine dehydrogenase (EC 1.1.1.3)] (Fragment) Length = 921 Score = 76.3 bits (186), Expect = 4e-14 Identities = 32/49 (65%), Positives = 44/49 (89%) Frame = +1 Query: 307 YLPKGDMWSVHKFGGTCMGTPQRIQNVADVVLGDSSERKLXIVSAMSKL 453 +LP+G MWS+HKFGGTC+G+ +RI+NVA++V+ D SERKL +VSAMSK+ Sbjct: 85 HLPRGAMWSIHKFGGTCVGSSERIRNVAEIVVEDDSERKLVVVSAMSKV 133
>AK_PSEAE (O69077) Aspartokinase (EC 2.7.2.4) (Aspartate kinase)| Length = 412 Score = 33.9 bits (76), Expect = 0.23 Identities = 18/40 (45%), Positives = 27/40 (67%), Gaps = 2/40 (5%) Frame = +1 Query: 334 VHKFGGTCMGTPQRIQNVADVV--LGDSSERKLXIVSAMS 447 V KFGGT +GT +RI+ VA+ V ++ + + +VSAMS Sbjct: 5 VQKFGGTSVGTVERIEQVAEKVKKFREAGDDVVVVVSAMS 44
>AK_HELPY (O25827) Aspartokinase (EC 2.7.2.4) (Aspartate kinase)| Length = 405 Score = 33.5 bits (75), Expect = 0.30 Identities = 20/43 (46%), Positives = 27/43 (62%), Gaps = 2/43 (4%) Frame = +1 Query: 325 MWSVHKFGGTCMGTPQRIQNVADVVLGDSS--ERKLXIVSAMS 447 M V K+GGT MG+ +RI NVA VL + + + +VSAMS Sbjct: 1 MLIVQKYGGTSMGSIERIHNVAQRVLESVTLGHQVVVVVSAMS 43
>AK_HELPJ (Q9ZJZ7) Aspartokinase (EC 2.7.2.4) (Aspartate kinase)| Length = 405 Score = 33.1 bits (74), Expect = 0.39 Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 2/43 (4%) Frame = +1 Query: 325 MWSVHKFGGTCMGTPQRIQNVADVVLGD--SSERKLXIVSAMS 447 M V K+GGT MG+ +RI NVA VL + + +VSAMS Sbjct: 1 MLIVQKYGGTSMGSIERIHNVAQRVLESVKLGHQVVVVVSAMS 43
>AK2_BACST (P53553) Aspartokinase 2 (EC 2.7.2.4) (Aspartokinase II) (Aspartate| kinase 2) [Contains: Aspartokinase II alpha subunit; Aspartokinase II beta subunit] Length = 407 Score = 33.1 bits (74), Expect = 0.39 Identities = 18/41 (43%), Positives = 28/41 (68%), Gaps = 2/41 (4%) Frame = +1 Query: 334 VHKFGGTCMGTPQRIQNVADVVLGDSSERK--LXIVSAMSK 450 V KFGGT +G+ +RIQ+VA+ V+ + + + +VSAM K Sbjct: 5 VQKFGGTSVGSIERIQHVANRVIEEVQKGNDVVVVVSAMGK 45
>AK2_BACSU (P08495) Aspartokinase 2 (EC 2.7.2.4) (Aspartokinase II) (Aspartate| kinase 2) [Contains: Aspartokinase II alpha subunit; Aspartokinase II beta subunit] Length = 408 Score = 33.1 bits (74), Expect = 0.39 Identities = 16/41 (39%), Positives = 27/41 (65%), Gaps = 2/41 (4%) Frame = +1 Query: 334 VHKFGGTCMGTPQRIQNVADVVLGDSSE--RKLXIVSAMSK 450 V KFGGT +G+ ++IQN A+ + + + + + +VSAM K Sbjct: 5 VQKFGGTSVGSVEKIQNAANRAIAEKQKGHQVVVVVSAMGK 45
>AK2_BACSG (Q59229) Aspartokinase 2 (EC 2.7.2.4) (Aspartokinase II) (Aspartate| kinase 2) [Contains: Aspartokinase II alpha subunit; Aspartokinase II beta subunit] Length = 411 Score = 33.1 bits (74), Expect = 0.39 Identities = 18/41 (43%), Positives = 26/41 (63%), Gaps = 2/41 (4%) Frame = +1 Query: 334 VHKFGGTCMGTPQRIQNVADVVLGDSSERK--LXIVSAMSK 450 V KFGGT +G+ +RI NVA+ V+ + + +VSAM K Sbjct: 5 VQKFGGTSVGSVERILNVANRVIEEKKNGNDVVVVVSAMGK 45
>IF2_CORGL (Q8NP40) Translation initiation factor IF-2| Length = 1004 Score = 31.2 bits (69), Expect = 1.5 Identities = 13/24 (54%), Positives = 15/24 (62%) Frame = -2 Query: 153 PAGGGRPEPPSMGGGCRDGARDGE 82 P GG RP+ GG RDG RDG+ Sbjct: 233 PGGGPRPQGQGRPGGQRDGQRDGQ 256
>SRRM1_MOUSE (Q52KI8) Serine/arginine repetitive matrix protein 1| (Plenty-of-prolines 101) Length = 946 Score = 30.8 bits (68), Expect = 1.9 Identities = 18/43 (41%), Positives = 24/43 (55%) Frame = +1 Query: 16 RHSEPPLLPAFRAASPRREMRSLAVASPVPTAAAHRRRLRPSA 144 R PP P R +SP R+ R L+ P+A+ RRR RPS+ Sbjct: 364 RSRSPPKKPPKRTSSPPRKTRRLS-----PSASPPRRRHRPSS 401
>LIPA2_HUMAN (O75334) Liprin-alpha-2 (Protein tyrosine phosphatase receptor type| f polypeptide-interacting protein alpha-2) (PTPRF-interacting protein alpha-2) Length = 1257 Score = 30.8 bits (68), Expect = 1.9 Identities = 22/72 (30%), Positives = 29/72 (40%) Frame = +1 Query: 19 HSEPPLLPAFRAASPRREMRSLAVASPVPTAAAHRRRLRPSASGREVISQCLKCEINQDR 198 HS P L P SP REM + V + HRR++ +KCE + Sbjct: 722 HSTPKLTPR----SPAREMDRMGVMTLPSDLRKHRRKIAVVEEDGREDKATIKCETSPPP 777 Query: 199 PLGALRLGGNLP 234 ALR+ LP Sbjct: 778 TPRALRMTHTLP 789
>SRRM1_PONPY (Q5R5Q2) Serine/arginine repetitive matrix protein 1| Length = 917 Score = 30.4 bits (67), Expect = 2.5 Identities = 18/42 (42%), Positives = 23/42 (54%) Frame = +1 Query: 16 RHSEPPLLPAFRAASPRREMRSLAVASPVPTAAAHRRRLRPS 141 R PP P R +SP R+ R L+ P+A+ RRR RPS Sbjct: 366 RSRSPPKKPPKRTSSPPRKTRRLS-----PSASPPRRRHRPS 402
>NNMT_HUMAN (P40261) Nicotinamide N-methyltransferase (EC 2.1.1.1)| Length = 264 Score = 30.4 bits (67), Expect = 2.5 Identities = 11/23 (47%), Positives = 17/23 (73%) Frame = +1 Query: 151 REVISQCLKCEINQDRPLGALRL 219 R+ + Q LKC++ Q +PLGA+ L Sbjct: 132 RQAVKQVLKCDVTQSQPLGAVPL 154
>SRRM1_HUMAN (Q8IYB3) Serine/arginine repetitive matrix protein 1| (Ser/Arg-related nuclear matrix protein) (SR-related nuclear matrix protein of 160 kDa) (SRm160) Length = 904 Score = 30.4 bits (67), Expect = 2.5 Identities = 18/42 (42%), Positives = 23/42 (54%) Frame = +1 Query: 16 RHSEPPLLPAFRAASPRREMRSLAVASPVPTAAAHRRRLRPS 141 R PP P R +SP R+ R L+ P+A+ RRR RPS Sbjct: 366 RSRSPPKKPPKRTSSPPRKTRRLS-----PSASPPRRRHRPS 402
>SFPQ_MOUSE (Q8VIJ6) Splicing factor, proline- and glutamine-rich| (Polypyrimidine tract-binding protein-associated splicing factor) (PTB-associated splicing factor) (PSF) (DNA-binding p52/p100 complex, 100 kDa subunit) Length = 699 Score = 30.0 bits (66), Expect = 3.3 Identities = 13/26 (50%), Positives = 15/26 (57%) Frame = -2 Query: 150 AGGGRPEPPSMGGGCRDGARDGEAPH 73 A GG P+PP GGG G R AP+ Sbjct: 218 APGGHPKPPHRGGGEPRGGRQHHAPY 243
>CAPP_BURPS (Q63W75) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)| (PEPC) Length = 994 Score = 30.0 bits (66), Expect = 3.3 Identities = 24/67 (35%), Positives = 30/67 (44%) Frame = +1 Query: 4 SLLPRHSEPPLLPAFRAASPRREMRSLAVASPVPTAAAHRRRLRPSASGREVISQCLKCE 183 S P H+EPP A RAA P R++ A PT AA +P RE Sbjct: 18 SSAPAHAEPP---ARRAAKPARKLDGAAARPLAPTNAA---SAKPQGRTRE--------- 62 Query: 184 INQDRPL 204 ++DRPL Sbjct: 63 -DKDRPL 68
>CAPP_BURMA (Q62LC1) Phosphoenolpyruvate carboxylase (EC 4.1.1.31) (PEPCase)| (PEPC) Length = 994 Score = 30.0 bits (66), Expect = 3.3 Identities = 24/67 (35%), Positives = 30/67 (44%) Frame = +1 Query: 4 SLLPRHSEPPLLPAFRAASPRREMRSLAVASPVPTAAAHRRRLRPSASGREVISQCLKCE 183 S P H+EPP A RAA P R++ A PT AA +P RE Sbjct: 18 SSAPAHAEPP---ARRAAKPARKLDGAAARPLAPTNAA---SAKPQGRTRE--------- 62 Query: 184 INQDRPL 204 ++DRPL Sbjct: 63 -DKDRPL 68
>LIPA2_MOUSE (Q8BSS9) Liprin-alpha-2 (Protein tyrosine phosphatase receptor type| f polypeptide-interacting protein alpha-2) (PTPRF-interacting protein alpha-2) Length = 1257 Score = 29.6 bits (65), Expect = 4.3 Identities = 21/72 (29%), Positives = 29/72 (40%) Frame = +1 Query: 19 HSEPPLLPAFRAASPRREMRSLAVASPVPTAAAHRRRLRPSASGREVISQCLKCEINQDR 198 HS P L P SP REM + V + HRR++ +KCE + Sbjct: 722 HSTPKLTPR----SPAREMDRMGVMTLPSDLRKHRRKIAVVEEDGREDKATIKCETSPPP 777 Query: 199 PLGALRLGGNLP 234 A+R+ LP Sbjct: 778 TPRAVRMTHTLP 789
>SRR1L_MOUSE (Q8K2M3) SRR1-like protein (Fragment)| Length = 243 Score = 29.6 bits (65), Expect = 4.3 Identities = 26/84 (30%), Positives = 37/84 (44%), Gaps = 23/84 (27%) Frame = +1 Query: 52 AASPRREMRSLAV---------ASPVPTAAAHRRRLRPS----------ASGREVISQCL 174 A +PRR R+ A P A RRLR + +S E I++CL Sbjct: 5 AVAPRRRKRAAGRRPRPGEGPRAEPDADGEAVLRRLREAEEDLRISDFCSSALETITECL 64 Query: 175 KCEINQDRP----LGALRLGGNLP 234 + ++ Q +P LG L LG +LP Sbjct: 65 RKQLEQLQPLTEALGRLHLGSSLP 88
>NNMT_MOUSE (O55239) Nicotinamide N-methyltransferase (EC 2.1.1.1)| Length = 264 Score = 28.9 bits (63), Expect = 7.3 Identities = 11/23 (47%), Positives = 15/23 (65%) Frame = +1 Query: 151 REVISQCLKCEINQDRPLGALRL 219 R I Q LKC++ Q +PLG + L Sbjct: 132 RRAIKQVLKCDVTQSQPLGGVSL 154
>VGLY_PIARV (P03540) Glycoprotein polyprotein [Contains: Glycoprotein G1;| Glycoprotein G2] Length = 503 Score = 28.5 bits (62), Expect = 9.6 Identities = 15/45 (33%), Positives = 24/45 (53%) Frame = +2 Query: 221 EEICQDMVLRICSHQLLQPFQLNKLKSVLIFQKVICGLCTSSVAL 355 EE C M L + ++ QLN S+ +F+K I GL + S+ + Sbjct: 321 EEFCDTMRLFDFNQNAIKTLQLNVENSLNLFKKTINGLISDSLVI 365
>VP4A_FOWPV (Q9J559) Major core protein P4a| Length = 891 Score = 28.5 bits (62), Expect = 9.6 Identities = 11/29 (37%), Positives = 18/29 (62%) Frame = -2 Query: 411 RVTKNYISNILNSLRCSHASATELVHRPH 325 RV+K Y++N+L CS + A +L+ H Sbjct: 555 RVSKRYLTNMLQKASCSQSEAEKLLSSAH 583
>PRAX_HUMAN (Q9BXM0) Periaxin| Length = 1461 Score = 28.5 bits (62), Expect = 9.6 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = +1 Query: 64 RREMRSLAVASPVPTAAAHRRRLRPSASGREVISQ 168 RR +++ AV PVP A A RR P REV + Sbjct: 167 RRGLKAEAVKGPVPAAPARRRLQLPRLRVREVAEE 201
>PRAX_MOUSE (O55103) Periaxin| Length = 1391 Score = 28.5 bits (62), Expect = 9.6 Identities = 15/35 (42%), Positives = 19/35 (54%) Frame = +1 Query: 64 RREMRSLAVASPVPTAAAHRRRLRPSASGREVISQ 168 RR +++ AV PVP A A RR P REV + Sbjct: 167 RRGLKAEAVKGPVPAAPARRRLQLPRLRVREVAEE 201 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 56,289,064 Number of Sequences: 219361 Number of extensions: 1042833 Number of successful extensions: 3484 Number of sequences better than 10.0: 25 Number of HSP's better than 10.0 without gapping: 3288 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 3481 length of database: 80,573,946 effective HSP length: 103 effective length of database: 57,979,763 effective search space used: 3246866728 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
