ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl42b07
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AK068391.1| Oryza sativa (japonica cultivar-group) cDNA clon... 250 4e-63
2dbj|D78573.1|RICAKHD Rice mRNA for aspartate kinase-homoserine d... 250 4e-63
3dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic D... 242 9e-61
4dbj|AP005839.3| Oryza sativa (japonica cultivar-group) genomic D... 242 9e-61
5gb|AY111338.1| Zea mays CL2352_-1 mRNA sequence 204 2e-49
6gb|L33913.1|MZEAKHDA Zea mays (clone pAKHSDH2) aspartate kinase-... 204 2e-49
7gb|AY111528.1| Zea mays CL2353_1 mRNA sequence 123 6e-25
8gb|L33912.1|MZEAKHD Zea mays (clone pAKHSDH1) aspartate kinase-h... 123 6e-25
9ref|XM_481776.1| Oryza sativa (japonica cultivar-group), mRNA 101 2e-18
10ref|XM_481775.1| Oryza sativa (japonica cultivar-group), mRNA 101 2e-18
11dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 101 2e-18
12dbj|AP004553.2| Oryza sativa (japonica cultivar-group) genomic D... 101 2e-18
13dbj|AK066783.1| Oryza sativa (japonica cultivar-group) cDNA clon... 101 2e-18
14dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010 44 0.42
15gb|DQ213556.1| Taeniopygia guttata clone 0058P0055A05 U3 snoRNP ... 42 1.6
16gb|DQ213555.1| Taeniopygia guttata clone 0058P0055E07 U3 snoRNP ... 42 1.6
17gb|DQ213554.1| Taeniopygia guttata clone 0058P0055F07 U3 snoRNP ... 42 1.6
18gb|DQ213553.1| Taeniopygia guttata clone 0058P0059C06 U3 snoRNP ... 42 1.6
19gb|DQ213552.1| Taeniopygia guttata clone 0058P0055D07 U3 snoRNP ... 42 1.6
20gb|AC009415.2| Homo sapiens BAC clone RP11-576H9 from 7, complet... 42 1.6
21gb|AC108880.2| Homo sapiens chromosome X clone RP11-403L9 map p1... 40 6.5
22gb|AC091808.4| Homo sapiens chromosome X clone RP11-157D23 map p... 40 6.5
23gb|AC017060.7| Homo sapiens BAC clone RP11-350D14 from 7, comple... 40 6.5
24emb|AL161426.7| Human DNA sequence from clone RP11-23P11 on chro... 40 6.5
25gb|CP000088.1| Thermobifida fusca YX, complete genome 40 6.5
26gb|AC147484.21| Medicago truncatula clone mth2-52b4, complete se... 40 6.5
27gb|AF421223.1| Acanthopteroctetes unifasciata 18S ribosomal RNA ... 40 6.5
28gb|AC021001.5|AC021001 Homo sapiens chromosome 8, clone RP11-419... 40 6.5
29gb|AY555583.1| Pediculus humanus glutamyl aminopeptidase (APA1) ... 40 6.5
30dbj|AP000427.3| Homo sapiens genomic DNA, chromosome 8q23, clone... 40 6.5
31emb|AL732568.8| Mouse DNA sequence from clone RP23-469G19 on chr... 40 6.5
32dbj|BA000009.3| Beta vulgaris subsp. vulgaris mitochondrial geno... 40 6.5
33dbj|BA000024.1| Beta vulgaris subsp. vulgaris mitochondrial geno... 40 6.5 
>dbj|AK068391.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013146N15, full
           insert sequence
          Length = 3120

 Score =  250 bits (126), Expect = 4e-63
 Identities = 212/239 (88%), Gaps = 4/239 (1%)
 Strand = Plus / Plus

                                                                       
Query: 228 tttgccaagacatggttctaagaatctgctcacaccagctgctgcagccgtttcagttga 287
           ||||| |||||||||||| | |||| ||||| ||   |||||||| ||  ||||| ||||
Sbjct: 253 tttgcaaagacatggttccaggaatttgctcgca---gctgctgcggctatttcaattga 309

                                                                       
Query: 288 acaagttgaagtcagtacttatcttccaaaaggtgatatgtggtctgtgcacaagttcgg 347
           ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 310 acaagctgaagtcagtacttatcttccaaaaggtgacatgtggtctgtgcacaagtttgg 369

                                                                       
Query: 348 tggcacttgcatgggaacacctcagagaattcagaatgttgctgatgtagttcttggtga 407
           |||||| || ||||||||||| |||||||||||||||||||||||| | |||||||||||
Sbjct: 370 tggcacctgtatgggaacaccccagagaattcagaatgttgctgatattgttcttggtga 429

                                                                      
Query: 408 ctcttccgagaggaagctgnatattgtctctgcaatgtcc-aagttactgacatgatgt 465
           |||||| ||||||||||||   ||||| |||||||||||| |||| |||||||||||||
Sbjct: 430 ctcttctgagaggaagctgatcattgtttctgcaatgtccaaagtcactgacatgatgt 488



 Score =  133 bits (67), Expect = 6e-28
 Identities = 121/139 (87%)
 Strand = Plus / Plus

                                                                       
Query: 68  gcgagatgcggagcctcgccgtcgcgagccccgtcccgacagccgccgcccatcgacgga 127
           |||||||||||||||||||||||||||||||| ||||| | ||||||||   ||| ||  
Sbjct: 81  gcgagatgcggagcctcgccgtcgcgagccccctcccgcccgccgccgcggttcgccgcc 140

                                                                       
Query: 128 ggctccggccgtccgcctccggcagggaagtaatttcacaatgtttgaagtgtgagataa 187
           |||  ||  | ||||||||||| |||||||| ||||||||||||| ||||||||||||||
Sbjct: 141 ggccacgcgcatccgcctccggaagggaagtgatttcacaatgttggaagtgtgagataa 200

                              
Query: 188 atcaggaccgacctttggg 206
           ||||||||| |||||||||
Sbjct: 201 atcaggaccaacctttggg 219
to top
>dbj|D78573.1|RICAKHD Rice mRNA for aspartate kinase-homoserine dehydrogenase, complete
           cds
          Length = 3061

 Score =  250 bits (126), Expect = 4e-63
 Identities = 212/239 (88%), Gaps = 4/239 (1%)
 Strand = Plus / Plus

                                                                       
Query: 228 tttgccaagacatggttctaagaatctgctcacaccagctgctgcagccgtttcagttga 287
           ||||| |||||||||||| | |||| ||||| ||   |||||||| ||  ||||| ||||
Sbjct: 220 tttgcaaagacatggttccaggaatttgctcgca---gctgctgcggctatttcaattga 276

                                                                       
Query: 288 acaagttgaagtcagtacttatcttccaaaaggtgatatgtggtctgtgcacaagttcgg 347
           ||||| |||||||||||||||||||||||||||||| |||||||||||||||||||| ||
Sbjct: 277 acaagctgaagtcagtacttatcttccaaaaggtgacatgtggtctgtgcacaagtttgg 336

                                                                       
Query: 348 tggcacttgcatgggaacacctcagagaattcagaatgttgctgatgtagttcttggtga 407
           |||||| || ||||||||||| |||||||||||||||||||||||| | |||||||||||
Sbjct: 337 tggcacctgtatgggaacaccccagagaattcagaatgttgctgatattgttcttggtga 396

                                                                      
Query: 408 ctcttccgagaggaagctgnatattgtctctgcaatgtcc-aagttactgacatgatgt 465
           |||||| ||||||||||||   ||||| |||||||||||| |||| |||||||||||||
Sbjct: 397 ctcttctgagaggaagctgatcattgtttctgcaatgtccaaagtcactgacatgatgt 455



 Score =  133 bits (67), Expect = 6e-28
 Identities = 121/139 (87%)
 Strand = Plus / Plus

                                                                       
Query: 68  gcgagatgcggagcctcgccgtcgcgagccccgtcccgacagccgccgcccatcgacgga 127
           |||||||||||||||||||||||||||||||| ||||| | ||||||||   ||| ||  
Sbjct: 48  gcgagatgcggagcctcgccgtcgcgagccccctcccgcccgccgccgcggttcgccgcc 107

                                                                       
Query: 128 ggctccggccgtccgcctccggcagggaagtaatttcacaatgtttgaagtgtgagataa 187
           |||  ||  | ||||||||||| |||||||| ||||||||||||| ||||||||||||||
Sbjct: 108 ggccacgcgcatccgcctccggaagggaagtgatttcacaatgttggaagtgtgagataa 167

                              
Query: 188 atcaggaccgacctttggg 206
           ||||||||| |||||||||
Sbjct: 168 atcaggaccaacctttggg 186
to top
>dbj|AP008215.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, complete
               sequence
          Length = 22696651

 Score =  242 bits (122), Expect = 9e-61
 Identities = 173/189 (91%), Gaps = 1/189 (0%)
 Strand = Plus / Minus

                                                                           
Query: 278     tttcagttgaacaagttgaagtcagtacttatcttccaaaaggtgatatgtggtctgtgc 337
               ||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 6953046 tttcaattgaacaagctgaagtcagtacttatcttccaaaaggtgacatgtggtctgtgc 6952987

                                                                           
Query: 338     acaagttcggtggcacttgcatgggaacacctcagagaattcagaatgttgctgatgtag 397
               ||||||| |||||||| || ||||||||||| |||||||||||||||||||||||| | |
Sbjct: 6952986 acaagtttggtggcacctgtatgggaacaccccagagaattcagaatgttgctgatattg 6952927

                                                                           
Query: 398     ttcttggtgactcttccgagaggaagctgnatattgtctctgcaatgtcc-aagttactg 456
               |||||||||||||||| ||||||||||||   ||||| |||||||||||| |||| ||||
Sbjct: 6952926 ttcttggtgactcttctgagaggaagctgatcattgtttctgcaatgtccaaagtcactg 6952867

                        
Query: 457     acatgatgt 465
               |||||||||
Sbjct: 6952866 acatgatgt 6952858



 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 54/57 (94%)
 Strand = Plus / Minus

                                                                        
Query: 150     cagggaagtaatttcacaatgtttgaagtgtgagataaatcaggaccgacctttggg 206
               ||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 6954192 cagggaagtgatttcacaatgttggaagtgtgagataaatcaggaccaacctttggg 6954136



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 46/49 (93%)
 Strand = Plus / Minus

                                                                
Query: 68      gcgagatgcggagcctcgccgtcgcgagccccgtcccgacagccgccgc 116
               |||||||||||||||||||||||||||||||| ||||| | ||||||||
Sbjct: 6955210 gcgagatgcggagcctcgccgtcgcgagccccctcccgcccgccgccgc 6955162
to top
>dbj|AP005839.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 9, BAC
             clone:OSJNBa0044K01
          Length = 160643

 Score =  242 bits (122), Expect = 9e-61
 Identities = 173/189 (91%), Gaps = 1/189 (0%)
 Strand = Plus / Minus

                                                                         
Query: 278   tttcagttgaacaagttgaagtcagtacttatcttccaaaaggtgatatgtggtctgtgc 337
             ||||| ||||||||| |||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 24217 tttcaattgaacaagctgaagtcagtacttatcttccaaaaggtgacatgtggtctgtgc 24158

                                                                         
Query: 338   acaagttcggtggcacttgcatgggaacacctcagagaattcagaatgttgctgatgtag 397
             ||||||| |||||||| || ||||||||||| |||||||||||||||||||||||| | |
Sbjct: 24157 acaagtttggtggcacctgtatgggaacaccccagagaattcagaatgttgctgatattg 24098

                                                                         
Query: 398   ttcttggtgactcttccgagaggaagctgnatattgtctctgcaatgtcc-aagttactg 456
             |||||||||||||||| ||||||||||||   ||||| |||||||||||| |||| ||||
Sbjct: 24097 ttcttggtgactcttctgagaggaagctgatcattgtttctgcaatgtccaaagtcactg 24038

                      
Query: 457   acatgatgt 465
             |||||||||
Sbjct: 24037 acatgatgt 24029



 Score = 89.7 bits (45), Expect = 8e-15
 Identities = 54/57 (94%)
 Strand = Plus / Minus

                                                                      
Query: 150   cagggaagtaatttcacaatgtttgaagtgtgagataaatcaggaccgacctttggg 206
             ||||||||| ||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct: 25363 cagggaagtgatttcacaatgttggaagtgtgagataaatcaggaccaacctttggg 25307



 Score = 73.8 bits (37), Expect = 5e-10
 Identities = 46/49 (93%)
 Strand = Plus / Minus

                                                              
Query: 68    gcgagatgcggagcctcgccgtcgcgagccccgtcccgacagccgccgc 116
             |||||||||||||||||||||||||||||||| ||||| | ||||||||
Sbjct: 26381 gcgagatgcggagcctcgccgtcgcgagccccctcccgcccgccgccgc 26333
to top
>gb|AY111338.1| Zea mays CL2352_-1 mRNA sequence
          Length = 3045

 Score =  204 bits (103), Expect = 2e-49
 Identities = 187/214 (87%), Gaps = 1/214 (0%)
 Strand = Plus / Plus

                                                                       
Query: 256 ctcacaccagctgctgcagccgtttcagttgaacaagttgaagtcagtacttatcttcca 315
           |||| |||||||||||||||  ||||||||||||||| |||||||| |||||||||||||
Sbjct: 242 ctcagaccagctgctgcagctatttcagttgaacaagatgaagtcaatacttatcttcca 301

                                                                       
Query: 316 aaaggtgatatgtggtctgtgcacaagttcggtggcacttgcatgggaacacctcagaga 375
           ||||||||||||||||||||||||||||||||||| || || |||||||| ||  | |||
Sbjct: 302 aaaggtgatatgtggtctgtgcacaagttcggtggaacctgtatgggaactcccaaaaga 361

                                                                       
Query: 376 attcagaatgttgctgatgtagttcttggtgactcttccgagaggaagctgnatattgtc 435
           || |||  ||||||  || ||||||||||||| ||||| ||||||||||||   ||||| 
Sbjct: 362 atccagtgtgttgcaaatatagttcttggtgattcttctgagaggaagctgatcattgtt 421

                                             
Query: 436 tctgcaatgtcc-aagttactgacatgatgtaca 468
           || ||||||||| |||| ||||||||||||||||
Sbjct: 422 tccgcaatgtccaaagtaactgacatgatgtaca 455
to top
>gb|L33913.1|MZEAKHDA Zea mays (clone pAKHSDH2) aspartate kinase-homoserine dehydrogenase
           mRNA, complete cds
          Length = 3045

 Score =  204 bits (103), Expect = 2e-49
 Identities = 187/214 (87%), Gaps = 1/214 (0%)
 Strand = Plus / Plus

                                                                       
Query: 256 ctcacaccagctgctgcagccgtttcagttgaacaagttgaagtcagtacttatcttcca 315
           |||| |||||||||||||||  ||||||||||||||| |||||||| |||||||||||||
Sbjct: 242 ctcagaccagctgctgcagctatttcagttgaacaagatgaagtcaatacttatcttcca 301

                                                                       
Query: 316 aaaggtgatatgtggtctgtgcacaagttcggtggcacttgcatgggaacacctcagaga 375
           ||||||||||||||||||||||||||||||||||| || || |||||||| ||  | |||
Sbjct: 302 aaaggtgatatgtggtctgtgcacaagttcggtggaacctgtatgggaactcccaaaaga 361

                                                                       
Query: 376 attcagaatgttgctgatgtagttcttggtgactcttccgagaggaagctgnatattgtc 435
           || |||  ||||||  || ||||||||||||| ||||| ||||||||||||   ||||| 
Sbjct: 362 atccagtgtgttgcaaatatagttcttggtgattcttctgagaggaagctgatcattgtt 421

                                             
Query: 436 tctgcaatgtcc-aagttactgacatgatgtaca 468
           || ||||||||| |||| ||||||||||||||||
Sbjct: 422 tccgcaatgtccaaagtaactgacatgatgtaca 455
to top
>gb|AY111528.1| Zea mays CL2353_1 mRNA sequence
          Length = 3153

 Score =  123 bits (62), Expect = 6e-25
 Identities = 182/221 (82%), Gaps = 1/221 (0%)
 Strand = Plus / Plus

                                                                       
Query: 247 aagaatctgctcacaccagctgctgcagccgtttcagttgaacaagttgaagtcagtact 306
           |||||| ||||| ||||| ||||||  || ||||||||||| |||| |||||  | | ||
Sbjct: 240 aagaatttgctcgcaccaactgctggtgctgtttcagttgagcaagctgaagctattgct 299

                                                                       
Query: 307 tatcttccaaaaggtgatatgtggtctgtgcacaagttcggtggcacttgcatgggaaca 366
            | || ||||||||||| |||||||| ||||||||||| |||||||| |||||||| || 
Sbjct: 300 gacctcccaaaaggtgacatgtggtcggtgcacaagtttggtggcacatgcatggggacc 359

                                                                       
Query: 367 cctcagagaattcagaatgttgctgatgtagttcttggtgactcttccgagaggaagctg 426
            || |||||||||| |||||||||||| |||| ||| ||||  |||| |||||||| |||
Sbjct: 360 tctgagagaattcacaatgttgctgatatagtccttcgtgatccttctgagaggaaactg 419

                                                    
Query: 427 natattgtctctgcaatgtccaa-gttactgacatgatgta 466
               |||| ||||||||||| || ||||| |||||||||||
Sbjct: 420 gtagttgtatctgcaatgtctaaggttaccgacatgatgta 460
to top
>gb|L33912.1|MZEAKHD Zea mays (clone pAKHSDH1) aspartate kinase-homoserine dehydrogenase
           mRNA, complete cds
          Length = 3178

 Score =  123 bits (62), Expect = 6e-25
 Identities = 182/221 (82%), Gaps = 1/221 (0%)
 Strand = Plus / Plus

                                                                       
Query: 247 aagaatctgctcacaccagctgctgcagccgtttcagttgaacaagttgaagtcagtact 306
           |||||| ||||| ||||| ||||||  || ||||||||||| |||| |||||  | | ||
Sbjct: 240 aagaatttgctcgcaccaactgctggtgctgtttcagttgagcaagctgaagctattgct 299

                                                                       
Query: 307 tatcttccaaaaggtgatatgtggtctgtgcacaagttcggtggcacttgcatgggaaca 366
            | || ||||||||||| |||||||| ||||||||||| |||||||| |||||||| || 
Sbjct: 300 gacctcccaaaaggtgacatgtggtcggtgcacaagtttggtggcacatgcatggggacc 359

                                                                       
Query: 367 cctcagagaattcagaatgttgctgatgtagttcttggtgactcttccgagaggaagctg 426
            || |||||||||| |||||||||||| |||| ||| ||||  |||| |||||||| |||
Sbjct: 360 tctgagagaattcacaatgttgctgatatagtccttcgtgatccttctgagaggaaactg 419

                                                    
Query: 427 natattgtctctgcaatgtccaa-gttactgacatgatgta 466
               |||| ||||||||||| || ||||| |||||||||||
Sbjct: 420 gtagttgtatctgcaatgtctaaggttaccgacatgatgta 460
to top
>ref|XM_481776.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2727

 Score =  101 bits (51), Expect = 2e-18
 Identities = 165/202 (81%), Gaps = 1/202 (0%)
 Strand = Plus / Plus

                                                                       
Query: 268 gctgcagccgtttcagttgaacaagttgaagtcagtacttatcttccaaaaggtgatatg 327
           ||||| || ||||||||||| |||| |||||  ||| || | |||||||||||||| |||
Sbjct: 273 gctgctgctgtttcagttgagcaagctgaagctagtgctcaccttccaaaaggtgacatg 332

                                                                       
Query: 328 tggtctgtgcacaagttcggtggcacttgcatgggaacacctcagagaattcagaatgtt 387
           ||||||||||| || || ||||| || |||||||||||  | ||||| ||||||||||| 
Sbjct: 333 tggtctgtgcataaatttggtgggacctgcatgggaacctcccagaggattcagaatgtg 392

                                                                       
Query: 388 gctgatgtagttcttggtgactcttccgagaggaagctgnatattgtctctgcaatgtc- 446
           |||||  || | ||| | ||| |||| |||||||| |||    |||| ||||||||||| 
Sbjct: 393 gctgacataatccttcgcgacccttctgagaggaaactggtagttgtgtctgcaatgtct 452

                                 
Query: 447 caagttactgacatgatgtaca 468
            |||| ||||||||||||||||
Sbjct: 453 aaagtcactgacatgatgtaca 474



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 77 ggagcctcgccgtcgcgagccc 98
          ||||||||||||||||||||||
Sbjct: 55 ggagcctcgccgtcgcgagccc 76
to top
>ref|XM_481775.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2766

 Score =  101 bits (51), Expect = 2e-18
 Identities = 165/202 (81%), Gaps = 1/202 (0%)
 Strand = Plus / Plus

                                                                       
Query: 268 gctgcagccgtttcagttgaacaagttgaagtcagtacttatcttccaaaaggtgatatg 327
           ||||| || ||||||||||| |||| |||||  ||| || | |||||||||||||| |||
Sbjct: 223 gctgctgctgtttcagttgagcaagctgaagctagtgctcaccttccaaaaggtgacatg 282

                                                                       
Query: 328 tggtctgtgcacaagttcggtggcacttgcatgggaacacctcagagaattcagaatgtt 387
           ||||||||||| || || ||||| || |||||||||||  | ||||| ||||||||||| 
Sbjct: 283 tggtctgtgcataaatttggtgggacctgcatgggaacctcccagaggattcagaatgtg 342

                                                                       
Query: 388 gctgatgtagttcttggtgactcttccgagaggaagctgnatattgtctctgcaatgtc- 446
           |||||  || | ||| | ||| |||| |||||||| |||    |||| ||||||||||| 
Sbjct: 343 gctgacataatccttcgcgacccttctgagaggaaactggtagttgtgtctgcaatgtct 402

                                 
Query: 447 caagttactgacatgatgtaca 468
            |||| ||||||||||||||||
Sbjct: 403 aaagtcactgacatgatgtaca 424



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 77 ggagcctcgccgtcgcgagccc 98
          ||||||||||||||||||||||
Sbjct: 5  ggagcctcgccgtcgcgagccc 26
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score =  101 bits (51), Expect = 2e-18
 Identities = 162/198 (81%), Gaps = 1/198 (0%)
 Strand = Plus / Minus

                                                                            
Query: 272      cagccgtttcagttgaacaagttgaagtcagtacttatcttccaaaaggtgatatgtggt 331
                |||| ||||||||||| |||| |||||  ||| || | |||||||||||||| |||||||
Sbjct: 15441961 cagctgtttcagttgagcaagctgaagctagtgctcaccttccaaaaggtgacatgtggt 15441902

                                                                            
Query: 332      ctgtgcacaagttcggtggcacttgcatgggaacacctcagagaattcagaatgttgctg 391
                ||||||| || || ||||| || |||||||||||  | ||||| ||||||||||| ||||
Sbjct: 15441901 ctgtgcataaatttggtgggacctgcatgggaacctcccagaggattcagaatgtggctg 15441842

                                                                            
Query: 392      atgtagttcttggtgactcttccgagaggaagctgnatattgtctctgcaatgtc-caag 450
                |  || | ||| | ||| |||| |||||||| |||    |||| |||||||||||  |||
Sbjct: 15441841 acataatccttcgcgacccttctgagaggaaactggtagttgtgtctgcaatgtctaaag 15441782

                                  
Query: 451      ttactgacatgatgtaca 468
                | ||||||||||||||||
Sbjct: 15441781 tcactgacatgatgtaca 15441764



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                      
Query: 77       ggagcctcgccgtcgcgagccc 98
                ||||||||||||||||||||||
Sbjct: 15443315 ggagcctcgccgtcgcgagccc 15443294
to top
>dbj|AP004553.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
              clone:OJ1790_D02
          Length = 162928

 Score =  101 bits (51), Expect = 2e-18
 Identities = 162/198 (81%), Gaps = 1/198 (0%)
 Strand = Plus / Minus

                                                                          
Query: 272    cagccgtttcagttgaacaagttgaagtcagtacttatcttccaaaaggtgatatgtggt 331
              |||| ||||||||||| |||| |||||  ||| || | |||||||||||||| |||||||
Sbjct: 127537 cagctgtttcagttgagcaagctgaagctagtgctcaccttccaaaaggtgacatgtggt 127478

                                                                          
Query: 332    ctgtgcacaagttcggtggcacttgcatgggaacacctcagagaattcagaatgttgctg 391
              ||||||| || || ||||| || |||||||||||  | ||||| ||||||||||| ||||
Sbjct: 127477 ctgtgcataaatttggtgggacctgcatgggaacctcccagaggattcagaatgtggctg 127418

                                                                          
Query: 392    atgtagttcttggtgactcttccgagaggaagctgnatattgtctctgcaatgtc-caag 450
              |  || | ||| | ||| |||| |||||||| |||    |||| |||||||||||  |||
Sbjct: 127417 acataatccttcgcgacccttctgagaggaaactggtagttgtgtctgcaatgtctaaag 127358

                                
Query: 451    ttactgacatgatgtaca 468
              | ||||||||||||||||
Sbjct: 127357 tcactgacatgatgtaca 127340



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 77     ggagcctcgccgtcgcgagccc 98
              ||||||||||||||||||||||
Sbjct: 128891 ggagcctcgccgtcgcgagccc 128870
to top
>dbj|AK066783.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013075O09, full
           insert sequence
          Length = 2726

 Score =  101 bits (51), Expect = 2e-18
 Identities = 165/202 (81%), Gaps = 1/202 (0%)
 Strand = Plus / Plus

                                                                       
Query: 268 gctgcagccgtttcagttgaacaagttgaagtcagtacttatcttccaaaaggtgatatg 327
           ||||| || ||||||||||| |||| |||||  ||| || | |||||||||||||| |||
Sbjct: 272 gctgctgctgtttcagttgagcaagctgaagctagtgctcaccttccaaaaggtgacatg 331

                                                                       
Query: 328 tggtctgtgcacaagttcggtggcacttgcatgggaacacctcagagaattcagaatgtt 387
           ||||||||||| || || ||||| || |||||||||||  | ||||| ||||||||||| 
Sbjct: 332 tggtctgtgcataaatttggtgggacctgcatgggaacctcccagaggattcagaatgtg 391

                                                                       
Query: 388 gctgatgtagttcttggtgactcttccgagaggaagctgnatattgtctctgcaatgtc- 446
           |||||  || | ||| | ||| |||| |||||||| |||    |||| ||||||||||| 
Sbjct: 392 gctgacataatccttcgcgacccttctgagaggaaactggtagttgtgtctgcaatgtct 451

                                 
Query: 447 caagttactgacatgatgtaca 468
            |||| ||||||||||||||||
Sbjct: 452 aaagtcactgacatgatgtaca 473



 Score = 44.1 bits (22), Expect = 0.42
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                
Query: 77 ggagcctcgccgtcgcgagccc 98
          ||||||||||||||||||||||
Sbjct: 54 ggagcctcgccgtcgcgagccc 75
to top
>dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010
          Length = 2039961

 Score = 44.1 bits (22), Expect = 0.42
 Identities = 28/30 (93%)
 Strand = Plus / Plus

                                            
Query: 344    tcggtggcacttgcatgggaacacctcaga 373
              ||||||||||| ||||||||| ||||||||
Sbjct: 361609 tcggtggcactggcatgggaatacctcaga 361638
to top
>gb|DQ213556.1| Taeniopygia guttata clone 0058P0055A05 U3 snoRNP protein 4-like
           mRNA, complete sequence
          Length = 1070

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 96  ccccgtcccgacagccgccgc 116
           |||||||||||||||||||||
Sbjct: 662 ccccgtcccgacagccgccgc 682
to top
>gb|DQ213555.1| Taeniopygia guttata clone 0058P0055E07 U3 snoRNP protein 4-like
           mRNA, complete sequence
          Length = 1072

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 96  ccccgtcccgacagccgccgc 116
           |||||||||||||||||||||
Sbjct: 663 ccccgtcccgacagccgccgc 683
to top
>gb|DQ213554.1| Taeniopygia guttata clone 0058P0055F07 U3 snoRNP protein 4-like
           mRNA, complete sequence
          Length = 1072

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 96  ccccgtcccgacagccgccgc 116
           |||||||||||||||||||||
Sbjct: 663 ccccgtcccgacagccgccgc 683
to top
>gb|DQ213553.1| Taeniopygia guttata clone 0058P0059C06 U3 snoRNP protein 4-like
           mRNA, complete sequence
          Length = 1072

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 96  ccccgtcccgacagccgccgc 116
           |||||||||||||||||||||
Sbjct: 663 ccccgtcccgacagccgccgc 683
to top
>gb|DQ213552.1| Taeniopygia guttata clone 0058P0055D07 U3 snoRNP protein 4-like
           mRNA, complete sequence
          Length = 1072

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 96  ccccgtcccgacagccgccgc 116
           |||||||||||||||||||||
Sbjct: 663 ccccgtcccgacagccgccgc 683
to top
>gb|AC009415.2| Homo sapiens BAC clone RP11-576H9 from 7, complete sequence
          Length = 180347

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 440   caatgtccaagttactgacatgatg 464
             ||||||||||||||||| |||||||
Sbjct: 41441 caatgtccaagttactgtcatgatg 41465
to top
>gb|AC108880.2| Homo sapiens chromosome X clone RP11-403L9 map p11.4, complete sequence
          Length = 218413

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 155   aagtaatttcacaatgtttg 174
             ||||||||||||||||||||
Sbjct: 91169 aagtaatttcacaatgtttg 91150
to top
>gb|AC091808.4| Homo sapiens chromosome X clone RP11-157D23 map p11.4, complete sequence
          Length = 170219

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 155    aagtaatttcacaatgtttg 174
              ||||||||||||||||||||
Sbjct: 149534 aagtaatttcacaatgtttg 149515
to top
>gb|AC017060.7| Homo sapiens BAC clone RP11-350D14 from 7, complete sequence
          Length = 103354

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 219  aggaggaaatttgccaagac 238
            ||||||||||||||||||||
Sbjct: 6406 aggaggaaatttgccaagac 6387
to top
>emb|AL161426.7| Human DNA sequence from clone RP11-23P11 on chromosome 13 Contains part
             of the GPC6 gene for glypican 6 and the 3' end of a novel
             gene, complete sequence
          Length = 150021

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 170   gtttgaagtgtgagataaat 189
             ||||||||||||||||||||
Sbjct: 55476 gtttgaagtgtgagataaat 55495
to top
>gb|CP000088.1| Thermobifida fusca YX, complete genome
          Length = 3642249

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 142     gcctccggcagggaagtaat 161
               ||||||||||||||||||||
Sbjct: 1710536 gcctccggcagggaagtaat 1710517
to top
>gb|AC147484.21| Medicago truncatula clone mth2-52b4, complete sequence
          Length = 119559

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 250   aatctgctcacaccagctgctgca 273
             ||||||||||||||| ||||||||
Sbjct: 32456 aatctgctcacaccatctgctgca 32479
to top
>gb|AF421223.1| Acanthopteroctetes unifasciata 18S ribosomal RNA gene, partial
           sequence
          Length = 646

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 119 atcgacggaggctccggccg 138
           ||||||||||||||||||||
Sbjct: 147 atcgacggaggctccggccg 166
to top
>gb|AC021001.5|AC021001 Homo sapiens chromosome 8, clone RP11-419L20, complete sequence
          Length = 175742

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 157   gtaatttcacaatgtttgaagtgt 180
             ||||||||||||||||| ||||||
Sbjct: 56356 gtaatttcacaatgtttcaagtgt 56333
to top
>gb|AY555583.1| Pediculus humanus glutamyl aminopeptidase (APA1) mRNA, complete cds
          Length = 2901

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 263 cagctgctgcagccgtttca 282
           ||||||||||||||||||||
Sbjct: 880 cagctgctgcagccgtttca 899
to top
>dbj|AP000427.3| Homo sapiens genomic DNA, chromosome 8q23, clone:KB1171G1
          Length = 187189

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 157   gtaatttcacaatgtttgaagtgt 180
             ||||||||||||||||| ||||||
Sbjct: 39345 gtaatttcacaatgtttcaagtgt 39368
to top
>emb|AL732568.8| Mouse DNA sequence from clone RP23-469G19 on chromosome 4, complete
             sequence
          Length = 169474

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 248   agaatctgctcacaccagct 267
             ||||||||||||||||||||
Sbjct: 81779 agaatctgctcacaccagct 81760
to top
>dbj|BA000009.3| Beta vulgaris subsp. vulgaris mitochondrial genomic DNA, complete
              sequence
          Length = 368801

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 296    aagtcagtacttatcttccaaaag 319
              |||||||| |||||||||||||||
Sbjct: 209001 aagtcagttcttatcttccaaaag 208978



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 296    aagtcagtacttatcttccaaaag 319
              |||||||| |||||||||||||||
Sbjct: 132203 aagtcagttcttatcttccaaaag 132226
to top
>dbj|BA000024.1| Beta vulgaris subsp. vulgaris mitochondrial genomic DNA, complete
              sequence
          Length = 501020

 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 296    aagtcagtacttatcttccaaaag 319
              |||||||| |||||||||||||||
Sbjct: 500349 aagtcagttcttatcttccaaaag 500372



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 296    aagtcagtacttatcttccaaaag 319
              |||||||| |||||||||||||||
Sbjct: 326840 aagtcagttcttatcttccaaaag 326863



 Score = 40.1 bits (20), Expect = 6.5
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 296    aagtcagtacttatcttccaaaag 319
              |||||||| |||||||||||||||
Sbjct: 134324 aagtcagttcttatcttccaaaag 134347


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 3,208,671
Number of Sequences: 3902068
Number of extensions: 3208671
Number of successful extensions: 62059
Number of sequences better than 10.0: 33
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 61927
Number of HSP's gapped (non-prelim): 117
length of query: 481
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 459
effective length of database: 17,147,199,772
effective search space: 7870564695348
effective search space used: 7870564695348
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top