ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl42b06
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1ARTE_ARATH (Q9FYL3) Protein ARTEMIS, chloroplast precursor (Arab... 30 1.1
2IF2_SHIFL (Q83JF9) Translation initiation factor IF-2 27 9.4
3IF2_SHIBS (Q31W47) Translation initiation factor IF-2 27 9.4
4IF2_SHISS (Q3YX73) Translation initiation factor IF-2 27 9.4
5IF2_SHIDS (Q32BG5) Translation initiation factor IF-2 27 9.4
6IF2_ECOLI (P0A705) Translation initiation factor IF-2 27 9.4
7IF2_ECOL6 (P59587) Translation initiation factor IF-2 27 9.4
8IF2_ECO57 (P0A706) Translation initiation factor IF-2 27 9.4

>ARTE_ARATH (Q9FYL3) Protein ARTEMIS, chloroplast precursor (Arabidopsis|
           thaliana envelope membrane integrase) (Ath4)
           (ALBINO3-like protein 1)
          Length = 1013

 Score = 30.4 bits (67), Expect = 1.1
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +1

Query: 286 DILLDCGATGKGDDTDGRQWAGD 354
           DI +DCG++    D D R W GD
Sbjct: 28  DISIDCGSSSSHIDADNRTWVGD 50



to top

>IF2_SHIFL (Q83JF9) Translation initiation factor IF-2|
          Length = 882

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -1

Query: 273 ERGRGRGRVAPSLRPRRGD 217
           E GRGRGR A + RP++G+
Sbjct: 240 EGGRGRGRNAKAARPKKGN 258



to top

>IF2_SHIBS (Q31W47) Translation initiation factor IF-2|
          Length = 882

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -1

Query: 273 ERGRGRGRVAPSLRPRRGD 217
           E GRGRGR A + RP++G+
Sbjct: 240 EGGRGRGRNAKAARPKKGN 258



to top

>IF2_SHISS (Q3YX73) Translation initiation factor IF-2|
          Length = 890

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -1

Query: 273 ERGRGRGRVAPSLRPRRGD 217
           E GRGRGR A + RP++G+
Sbjct: 248 EGGRGRGRNAKAARPKKGN 266



to top

>IF2_SHIDS (Q32BG5) Translation initiation factor IF-2|
          Length = 890

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -1

Query: 273 ERGRGRGRVAPSLRPRRGD 217
           E GRGRGR A + RP++G+
Sbjct: 248 EGGRGRGRNAKAARPKKGN 266



to top

>IF2_ECOLI (P0A705) Translation initiation factor IF-2|
          Length = 890

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -1

Query: 273 ERGRGRGRVAPSLRPRRGD 217
           E GRGRGR A + RP++G+
Sbjct: 248 EGGRGRGRNAKAARPKKGN 266



to top

>IF2_ECOL6 (P59587) Translation initiation factor IF-2|
          Length = 890

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -1

Query: 273 ERGRGRGRVAPSLRPRRGD 217
           E GRGRGR A + RP++G+
Sbjct: 248 EGGRGRGRNAKAARPKKGN 266



to top

>IF2_ECO57 (P0A706) Translation initiation factor IF-2|
          Length = 890

 Score = 27.3 bits (59), Expect = 9.4
 Identities = 11/19 (57%), Positives = 15/19 (78%)
 Frame = -1

Query: 273 ERGRGRGRVAPSLRPRRGD 217
           E GRGRGR A + RP++G+
Sbjct: 248 EGGRGRGRNAKAARPKKGN 266


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,537,129
Number of Sequences: 219361
Number of extensions: 244712
Number of successful extensions: 1071
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1034
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1069
length of database: 80,573,946
effective HSP length: 95
effective length of database: 59,734,651
effective search space used: 1433631624
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
to top