ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
menu 
| Clone Name | bastl42b03 |
|---|---|
| Clone Library Name | barley_pub |
>GCSP_PEA (P26969) Glycine dehydrogenase [decarboxylating], mitochondrial| precursor (EC 1.4.4.2) (Glycine decarboxylase) (Glycine cleavage system P-protein) Length = 1057 Score = 53.5 bits (127), Expect = 2e-07 Identities = 24/34 (70%), Positives = 28/34 (82%) Frame = +2 Query: 50 PAAARPVSVSALRPSDTFPRRHNSATPAEQAVMA 151 P+ +R +SV AL+PSDTFPRRHNSATP EQ MA Sbjct: 81 PSQSRSISVEALKPSDTFPRRHNSATPDEQTKMA 114
>GCSP_SOLTU (O49954) Glycine dehydrogenase [decarboxylating], mitochondrial| precursor (EC 1.4.4.2) (Glycine decarboxylase) (Glycine cleavage system P-protein) Length = 1035 Score = 52.4 bits (124), Expect = 3e-07 Identities = 24/31 (77%), Positives = 26/31 (83%) Frame = +2 Query: 59 ARPVSVSALRPSDTFPRRHNSATPAEQAVMA 151 AR +SV AL+PSDTFPRRHNSATP EQ MA Sbjct: 62 ARSISVEALKPSDTFPRRHNSATPEEQTKMA 92
>GCSP_ARATH (O80988) Glycine dehydrogenase [decarboxylating], mitochondrial| precursor (EC 1.4.4.2) (Glycine decarboxylase) (Glycine cleavage system P-protein) Length = 1044 Score = 52.0 bits (123), Expect = 4e-07 Identities = 24/30 (80%), Positives = 26/30 (86%) Frame = +2 Query: 62 RPVSVSALRPSDTFPRRHNSATPAEQAVMA 151 R +SV AL+PSDTFPRRHNSATP EQA MA Sbjct: 71 RSISVDALKPSDTFPRRHNSATPDEQAQMA 100
>GCSPA_FLAPR (P49361) Glycine dehydrogenase [decarboxylating] A, mitochondrial| precursor (EC 1.4.4.2) (Glycine decarboxylase A) (Glycine cleavage system P-protein A) Length = 1037 Score = 50.8 bits (120), Expect = 1e-06 Identities = 23/30 (76%), Positives = 25/30 (83%) Frame = +2 Query: 62 RPVSVSALRPSDTFPRRHNSATPAEQAVMA 151 R +SV AL+PSDTFPRRHNSATP EQ MA Sbjct: 65 RTISVEALKPSDTFPRRHNSATPEEQTKMA 94
>GCSP_FLATR (O49852) Glycine dehydrogenase [decarboxylating], mitochondrial| precursor (EC 1.4.4.2) (Glycine decarboxylase) (Glycine cleavage system P-protein) Length = 1034 Score = 50.8 bits (120), Expect = 1e-06 Identities = 23/30 (76%), Positives = 25/30 (83%) Frame = +2 Query: 62 RPVSVSALRPSDTFPRRHNSATPAEQAVMA 151 R +SV AL+PSDTFPRRHNSATP EQ MA Sbjct: 62 RTISVEALKPSDTFPRRHNSATPEEQTKMA 91
>GCSP_FLAAN (O49850) Glycine dehydrogenase [decarboxylating], mitochondrial| precursor (EC 1.4.4.2) (Glycine decarboxylase) (Glycine cleavage system P-protein) Length = 1034 Score = 50.8 bits (120), Expect = 1e-06 Identities = 23/30 (76%), Positives = 25/30 (83%) Frame = +2 Query: 62 RPVSVSALRPSDTFPRRHNSATPAEQAVMA 151 R +SV AL+PSDTFPRRHNSATP EQ MA Sbjct: 62 RTISVEALKPSDTFPRRHNSATPEEQTKMA 91
>GCSPB_FLAPR (P49362) Glycine dehydrogenase [decarboxylating] B, mitochondrial| precursor (EC 1.4.4.2) (Glycine decarboxylase B) (Glycine cleavage system P-protein B) Length = 1034 Score = 50.8 bits (120), Expect = 1e-06 Identities = 23/30 (76%), Positives = 25/30 (83%) Frame = +2 Query: 62 RPVSVSALRPSDTFPRRHNSATPAEQAVMA 151 R +SV AL+PSDTFPRRHNSATP EQ MA Sbjct: 62 RTISVEALKPSDTFPRRHNSATPEEQTKMA 91
>GCSP2_ARATH (Q94B78) Putative glycine dehydrogenase [decarboxylating] 2,| mitochondrial precursor (EC 1.4.4.2) (Glycine decarboxylase 2) (Glycine cleavage system P-protein 2) Length = 1037 Score = 48.9 bits (115), Expect = 4e-06 Identities = 22/30 (73%), Positives = 25/30 (83%) Frame = +2 Query: 62 RPVSVSALRPSDTFPRRHNSATPAEQAVMA 151 R +SV A++PSDTFPRRHNSATP EQ MA Sbjct: 66 RSISVDAVKPSDTFPRRHNSATPDEQTHMA 95
>GCSP2_PSEAE (Q9HTX7) Glycine dehydrogenase [decarboxylating] 2 (EC 1.4.4.2)| (Glycine decarboxylase 2) (Glycine cleavage system P-protein 2) Length = 958 Score = 29.6 bits (65), Expect = 2.4 Identities = 13/26 (50%), Positives = 17/26 (65%) Frame = +2 Query: 71 SVSALRPSDTFPRRHNSATPAEQAVM 148 S++ L+P+D F RRH PAEQ M Sbjct: 6 SLAQLQPADAFLRRHLGPDPAEQQAM 31
>PABPB_XENLA (Q6IP09) Polyadenylate-binding protein 1-B (Poly(A)-binding protein| 1-B) (Cytoplasmic poly(A)-binding protein 1-B) (PABP-B) (PABP 1-B) (xPABP1-B) Length = 633 Score = 28.9 bits (63), Expect = 4.1 Identities = 14/36 (38%), Positives = 21/36 (58%) Frame = +2 Query: 2 RPFPLYLPVSVAGPLIPAAARPVSVSALRPSDTFPR 109 RP P ++AG + P+A RP + S +RP+ PR Sbjct: 441 RPHPFQ---NMAGAIRPSAPRPPTFSTMRPTSQVPR 473
>MPRB_PIG (Q865K9) Membrane progestin receptor beta (mPR beta) (Progestin and| adipoQ receptor family member VIII) Length = 354 Score = 28.5 bits (62), Expect = 5.3 Identities = 11/18 (61%), Positives = 12/18 (66%) Frame = +1 Query: 22 AGFCGWASYTGRCSARLR 75 A FCGW S TG C A+ R Sbjct: 183 AAFCGWLSCTGCCYAKYR 200
>ENV_MLVRK (P31794) Env polyprotein precursor (Coat polyprotein) [Contains:| Coat protein GP76; Spike protein p15E; R protein] Length = 665 Score = 27.7 bits (60), Expect = 9.0 Identities = 13/43 (30%), Positives = 21/43 (48%) Frame = +2 Query: 8 FPLYLPVSVAGPLIPAAARPVSVSALRPSDTFPRRHNSATPAE 136 F + L ++ +GP +P PV PS H+++TP E Sbjct: 253 FGIRLKITDSGPRVPIGPNPVLSDQRPPSQPRSPPHSNSTPTE 295
>ENV_MLVRD (P11268) Env polyprotein precursor (Coat polyprotein) [Contains:| Coat protein GP76; Spike protein p15E; R protein] Length = 665 Score = 27.7 bits (60), Expect = 9.0 Identities = 13/43 (30%), Positives = 21/43 (48%) Frame = +2 Query: 8 FPLYLPVSVAGPLIPAAARPVSVSALRPSDTFPRRHNSATPAE 136 F + L ++ +GP +P PV PS H+++TP E Sbjct: 253 FGIRLKITDSGPRVPIGPNPVLSDQRPPSQPRSPPHSNSTPTE 295 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 18,997,268 Number of Sequences: 219361 Number of extensions: 240314 Number of successful extensions: 937 Number of sequences better than 10.0: 13 Number of HSP's better than 10.0 without gapping: 914 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 936 length of database: 80,573,946 effective HSP length: 26 effective length of database: 74,870,560 effective search space used: 1796893440 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)
