>FMT_STRAW (Q827P7) Methionyl-tRNA formyltransferase (EC 2.1.2.9)|
          Length = 310

 Score = 32.3 bits (72), Expect = 0.29
 Identities = 17/42 (40%), Positives = 24/42 (57%), Gaps = 3/42 (7%)
 Frame = +1

Query: 250 AHQPWDTGCLRLKFVLGGCVPSP--WEDFQSSR-KVLAVVGI 366
           AH  W T  LR+  V+ GC P+P  W  F+  R K++ VV +
Sbjct: 210 AHVDWSTPALRVDRVVRGCTPAPGAWTVFRGERLKLIQVVPV 251

>YJS1_YEAST (P46987) Hypothetical 69.5 kDa protein in SWE1-ATP12 intergenic|
           region
          Length = 611

 Score = 30.0 bits (66), Expect = 1.4
 Identities = 13/28 (46%), Positives = 19/28 (67%)
 Frame = +3

Query: 6   SPPPRHTTCSVVRSRALPLPLRNGARAE 89
           SPPP +T CS+ RS+ L +PL +  R +
Sbjct: 352 SPPPSNTGCSLHRSKPLHIPLSSVIRED 379

>SPEN_DROME (Q8SX83) Protein split ends|
          Length = 5560

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 24/93 (25%), Positives = 40/93 (43%), Gaps = 2/93 (2%)
 Frame = +1

Query: 82   GLSIESGSAIRVAVLPVGGPIPPQCLRDYAALVARHARVDLASLRPYYSEHQK--SPFAH 255
            G    S +A+  A  P  GPI PQ      +L+ +   + +    P+++  Q   SP +H
Sbjct: 3575 GSPTASQNAMPQASTPKQGPITPQQAIRTQSLIMQPPTISIPEQTPHFAVPQMVLSPQSH 3634

Query: 256  QPWDTGCLRLKFVLGGCVPSPWEDFQSSRKVLA 354
             P   G     +++G   PSP     S  + +A
Sbjct: 3635 HPQQPG----TYMVGIRAPSPHSPLHSPGRGVA 3663

>YAP1_YEAST (P19880) AP-1-like transcription factor YAP1 (Phenanthroline|
           resistance protein PAR1) (Pleiotropic drug resistance
           protein PDR4)
          Length = 650

 Score = 29.6 bits (65), Expect = 1.9
 Identities = 16/30 (53%), Positives = 20/30 (66%)
 Frame = -1

Query: 125 STATRMADPDSMLSPGSIAEGEGESSRSDD 36
           STA R  D   ++SPGS+AE EG  SR D+
Sbjct: 4   STAKRSLD---VVSPGSLAEFEGSKSRHDE 30

>CO4A4_HUMAN (P53420) Collagen alpha-4(IV) chain precursor|
          Length = 1690

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -3

Query: 132 HRQHRHPDGRPGLDAQPGLH 73
           H+  R PDG PG   QPG H
Sbjct: 567 HKGERGPDGPPGFPGQPGSH 586

>VGLM_NYV (Q83887) Envelope polyprotein precursor [Contains: Glycoprotein 1|
           (G1); Glycoprotein 2 (G2)]
          Length = 1140

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 13/20 (65%), Positives = 14/20 (70%)
 Frame = -1

Query: 125 STATRMADPDSMLSPGSIAE 66
           ST  R ADPD + SPG IAE
Sbjct: 330 STLVRKADPDYVFSPGIIAE 349

>NCAP_TACV (P18140) Nucleocapsid protein (Nucleoprotein)|
          Length = 570

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +1

Query: 115 VAVLPVGGPIPPQCLRDYAALVARHARVDLASLRPYYSEHQKSPFAHQPWD 267
           + +LP    I  Q   D   L+  H R DL  +   ++  Q   F HQ WD
Sbjct: 447 IGLLPPNMVITTQGSDDIRKLLDIHGRKDLKLIDVKFTSDQARLFEHQVWD 497

>SPIT1_HUMAN (O43278) Kunitz-type protease inhibitor 1 precursor (Hepatocyte|
           growth factor activator inhibitor type 1) (HAI-1)
          Length = 529

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -1

Query: 326 SSQGEGTQPPSTNLRRRQPVSQGWCAKGLFWCS 228
           SS  + T P   ++ RR PV  G C    F CS
Sbjct: 311 SSGAQATFPQGPSMERRHPVCSGTCQPTQFRCS 343

>FAT2_YEAST (P38137) Peroxisomal-coenzyme A synthetase (EC 6.-.-.-)|
          Length = 543

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 149 GGIGPPTGSTATRMADPDSMLSPGSIAE 66
           G +G P G T   + D D++L PG + E
Sbjct: 356 GTVGQPQGVTVVILDDNDNVLPPGKVGE 383

>FTSK_STRR6 (P64167) DNA translocase ftsK|
          Length = 767

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 107 ADPDSMLSPGSIAEGEGESSRSDDG 33
           AD D    PG ++E EGE S  D G
Sbjct: 682 ADYDESFDPGEVSENEGEFSDGDAG 706

>FTSK_STRPN (P64166) DNA translocase ftsK|
          Length = 767

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = -1

Query: 107 ADPDSMLSPGSIAEGEGESSRSDDG 33
           AD D    PG ++E EGE S  D G
Sbjct: 682 ADYDESFDPGEVSENEGEFSDGDAG 706

>HEM3_BURPS (Q63W73) Porphobilinogen deaminase (EC 2.5.1.61) (PBG)|
           (Hydroxymethylbilane synthase) (HMBS)
           (Pre-uroporphyrinogen synthase)
          Length = 329

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +1

Query: 76  EPGLSIESGSAIRVAVLPVGGPIPPQCLRDYAALVARHARVDLASLR 216
           +P  +  S     +  LP G  +    LR  A L ARH R+D+  LR
Sbjct: 111 DPRDAFVSNDYASLDALPAGAVVGTSSLRREAMLRARHPRLDVRPLR 157

>HEM3_BURMA (Q62LC0) Porphobilinogen deaminase (EC 2.5.1.61) (PBG)|
           (Hydroxymethylbilane synthase) (HMBS)
           (Pre-uroporphyrinogen synthase)
          Length = 329

 Score = 27.7 bits (60), Expect = 7.1
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = +1

Query: 76  EPGLSIESGSAIRVAVLPVGGPIPPQCLRDYAALVARHARVDLASLR 216
           +P  +  S     +  LP G  +    LR  A L ARH R+D+  LR
Sbjct: 111 DPRDAFVSNDYASLDALPAGAVVGTSSLRREAMLRARHPRLDVRPLR 157

>XRCC3_MOUSE (Q9CXE6) DNA-repair protein XRCC3 (X-ray repair cross-complementing|
           protein 3)
          Length = 349

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 20/54 (37%), Positives = 28/54 (51%)
 Frame = +1

Query: 151 QCLRDYAALVARHARVDLASLRPYYSEHQKSPFAHQPWDTGCLRLKFVLGGCVP 312
           QCL   A+L  R +RV L++L   + + +  P  HQ    GC  L   LGG +P
Sbjct: 47  QCLLRAASLHLRGSRV-LSALH-LFQQKESFPEQHQRLSLGCPVLDQFLGGGLP 98

>YS25_CAEEL (Q09366) Hypothetical protein ZK1320.5|
          Length = 414

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 19/49 (38%), Positives = 26/49 (53%), Gaps = 4/49 (8%)
 Frame = -1

Query: 149 GGIGPPTGSTATRMA----DPDSMLSPGSIAEGEGESSRSDDGAGRVSG 15
           GG G P   +  RMA    DP+S+ S GS+A    + S +  G+G  SG
Sbjct: 351 GGGGAPRPPSGGRMASISKDPNSITSSGSLA----KQSTASMGSGGASG 395

>AXN2_BRARE (P57095) Axin-2 (Axis inhibition protein 2)|
          Length = 812

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 10/23 (43%), Positives = 18/23 (78%)
 Frame = +3

Query: 18  RHTTCSVVRSRALPLPLRNGARA 86
           RH+T S+ R ++ P+P++NG+ A
Sbjct: 688 RHSTSSLQRDKSHPVPVQNGSSA 710

>AGP1_YEAST (P25376) General amino acid permease AGP1 (Asparagine/glutamine|
           permease)
          Length = 595

 Score = 27.3 bits (59), Expect = 9.2
 Identities = 16/42 (38%), Positives = 20/42 (47%)
 Frame = -1

Query: 140 GPPTGSTATRMADPDSMLSPGSIAEGEGESSRSDDGAGRVSG 15
           GP     AT+M D  S +SP S    E E + S D  G  +G
Sbjct: 69  GPQDEVEATQMNDLTSAISPSSRQAQELEKNESSDNIGANTG 110


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 38,936,095
Number of Sequences: 219361
Number of extensions: 667029
Number of successful extensions: 2883
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 2665
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2882
length of database: 80,573,946
effective HSP length: 100
effective length of database: 58,637,846
effective search space used: 1407308304
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)