ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl42a11
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1GIGAN_ORYSA (Q9AWL7) GIGANTEA protein 179 4e-45
2GIGAN_ARATH (Q9SQI2) GIGANTEA protein 135 5e-32
3LYAM2_BOVIN (P98107) E-selectin precursor (Endothelial leukocyte... 28 8.7

>GIGAN_ORYSA (Q9AWL7) GIGANTEA protein|
          Length = 1160

 Score =  179 bits (453), Expect = 4e-45
 Identities = 82/90 (91%), Positives = 87/90 (96%)
 Frame = +1

Query: 193 MSASNGKWIDGLQFSSLFWPPPHDAQQKQAQILAYVEYFGQFTSDSEQFPEDVAQLIQTC 372
           MSASN KWIDGLQFSSLFWPPP D+QQKQAQILAYVEYFGQFT+DSEQFPED+AQLIQ+C
Sbjct: 1   MSASNEKWIDGLQFSSLFWPPPQDSQQKQAQILAYVEYFGQFTADSEQFPEDIAQLIQSC 60

Query: 373 YPSXDKRLVDEVLATFVLHHPEHGHAVVHP 462
           YPS +KRLVDEVLATFVLHHPEHGHAVVHP
Sbjct: 61  YPSKEKRLVDEVLATFVLHHPEHGHAVVHP 90



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>GIGAN_ARATH (Q9SQI2) GIGANTEA protein|
          Length = 1173

 Score =  135 bits (340), Expect = 5e-32
 Identities = 61/89 (68%), Positives = 76/89 (85%)
 Frame = +1

Query: 196 SASNGKWIDGLQFSSLFWPPPHDAQQKQAQILAYVEYFGQFTSDSEQFPEDVAQLIQTCY 375
           S+S+ +WIDGLQFSSL WPPP D QQ + Q++AYVEYFGQFTS  EQFP+D+A+L++  Y
Sbjct: 4   SSSSERWIDGLQFSSLLWPPPRDPQQHKDQVVAYVEYFGQFTS--EQFPDDIAELVRHQY 61

Query: 376 PSXDKRLVDEVLATFVLHHPEHGHAVVHP 462
           PS +KRL+D+VLA FVLHHPEHGHAV+ P
Sbjct: 62  PSTEKRLLDDVLAMFVLHHPEHGHAVILP 90



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>LYAM2_BOVIN (P98107) E-selectin precursor (Endothelial leukocyte adhesion|
           molecule 1) (ELAM-1) (Leukocyte-endothelial cell
           adhesion molecule 2) (LECAM2) (CD62E antigen)
          Length = 485

 Score = 28.5 bits (62), Expect = 8.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +1

Query: 370 CYPSXDKRLVDEVLATFVLHHPEHGHAVVHP 462
           C+P       ++V+      HPEHGH V +P
Sbjct: 166 CHPGFKGLKCEQVVTCPAQKHPEHGHLVCNP 196


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 50,512,710
Number of Sequences: 219361
Number of extensions: 901177
Number of successful extensions: 2246
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 2203
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2245
length of database: 80,573,946
effective HSP length: 102
effective length of database: 58,199,124
effective search space used: 2968155324
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
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