Clone Name | bastl42a11 |
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Clone Library Name | barley_pub |
No. | Definition | Score (bits) |
E Value |
1 | GIGAN_ORYSA (Q9AWL7) GIGANTEA protein | 179 | 4e-45 | 2 | GIGAN_ARATH (Q9SQI2) GIGANTEA protein | 135 | 5e-32 | 3 | LYAM2_BOVIN (P98107) E-selectin precursor (Endothelial leukocyte... | 28 | 8.7 |
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>GIGAN_ORYSA (Q9AWL7) GIGANTEA protein| Length = 1160 Score = 179 bits (453), Expect = 4e-45 Identities = 82/90 (91%), Positives = 87/90 (96%) Frame = +1 Query: 193 MSASNGKWIDGLQFSSLFWPPPHDAQQKQAQILAYVEYFGQFTSDSEQFPEDVAQLIQTC 372 MSASN KWIDGLQFSSLFWPPP D+QQKQAQILAYVEYFGQFT+DSEQFPED+AQLIQ+C Sbjct: 1 MSASNEKWIDGLQFSSLFWPPPQDSQQKQAQILAYVEYFGQFTADSEQFPEDIAQLIQSC 60 Query: 373 YPSXDKRLVDEVLATFVLHHPEHGHAVVHP 462 YPS +KRLVDEVLATFVLHHPEHGHAVVHP Sbjct: 61 YPSKEKRLVDEVLATFVLHHPEHGHAVVHP 90
>GIGAN_ARATH (Q9SQI2) GIGANTEA protein| Length = 1173 Score = 135 bits (340), Expect = 5e-32 Identities = 61/89 (68%), Positives = 76/89 (85%) Frame = +1 Query: 196 SASNGKWIDGLQFSSLFWPPPHDAQQKQAQILAYVEYFGQFTSDSEQFPEDVAQLIQTCY 375 S+S+ +WIDGLQFSSL WPPP D QQ + Q++AYVEYFGQFTS EQFP+D+A+L++ Y Sbjct: 4 SSSSERWIDGLQFSSLLWPPPRDPQQHKDQVVAYVEYFGQFTS--EQFPDDIAELVRHQY 61 Query: 376 PSXDKRLVDEVLATFVLHHPEHGHAVVHP 462 PS +KRL+D+VLA FVLHHPEHGHAV+ P Sbjct: 62 PSTEKRLLDDVLAMFVLHHPEHGHAVILP 90
>LYAM2_BOVIN (P98107) E-selectin precursor (Endothelial leukocyte adhesion| molecule 1) (ELAM-1) (Leukocyte-endothelial cell adhesion molecule 2) (LECAM2) (CD62E antigen) Length = 485 Score = 28.5 bits (62), Expect = 8.7 Identities = 11/31 (35%), Positives = 16/31 (51%) Frame = +1 Query: 370 CYPSXDKRLVDEVLATFVLHHPEHGHAVVHP 462 C+P ++V+ HPEHGH V +P Sbjct: 166 CHPGFKGLKCEQVVTCPAQKHPEHGHLVCNP 196 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.318 0.135 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 50,512,710 Number of Sequences: 219361 Number of extensions: 901177 Number of successful extensions: 2246 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 2203 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2245 length of database: 80,573,946 effective HSP length: 102 effective length of database: 58,199,124 effective search space used: 2968155324 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits)