Clone Information

BLAST Search Result

Clone Name	bastl42a11
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	gb\|AY679115.1\| Triticum aestivum gigantea 3 (TaGI3) mRNA, comple...	537	e-149
2	gb\|AY679114.1\| Triticum aestivum gigantea 2 (TaGI2) mRNA, comple...	537	e-149
3	gb\|AF543844.1\| Triticum aestivum gigantea (TaGI1) mRNA, complete...	525	e-146
4	gb\|AY740523.1\| Hordeum vulgare gigantea-like protein (GI) mRNA, ...	523	e-145
5	dbj\|AK072166.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	345	8e-92
6	ref\|XM_550413.1\| Oryza sativa (japonica cultivar-group), mRNA	331	1e-87
7	dbj\|AK100147.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	331	1e-87
8	dbj\|AK067038.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	331	1e-87
9	gb\|AY740524.1\| Hordeum vulgare subsp. vulgare gigantea-like prot...	240	3e-60
10	dbj\|AP008207.1\| Oryza sativa (japonica cultivar-group) genomic D...	143	6e-31
11	dbj\|AP003047.2\| Oryza sativa (japonica cultivar-group) genomic D...	143	6e-31
12	gb\|AC148397.13\| Medicago truncatula clone mth2-22h4, complete se...	46	0.10
13	dbj\|AB210848.1\| Lemna gibba LgGI H1 mRNA for GI homologue, compl...	44	0.40
14	gb\|AY022829.1\| Oryza sativa microsatellite MRG5154 containing (C...	42	1.6
15	gb\|AF229199.1\|AF229199 Oryza sativa chromosome 1 clone OSJNBa004...	42	1.6
16	dbj\|AP003379.2\| Oryza sativa (japonica cultivar-group) genomic D...	42	1.6
17	dbj\|AK100276.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	42	1.6
18	gb\|AE009442.1\| Xylella fastidiosa Temecula1, complete genome	42	1.6
19	gb\|AC155340.1\| Brassica rapa subsp. pekinensis chromosome Cytoge...	42	1.6
20	ref\|XM_474638.1\| Oryza sativa (japonica cultivar-group), predic...	40	6.2
21	gb\|AC183964.3\| Pan troglodytes BAC clone CH251-654L7 from chromo...	40	6.2
22	gb\|AC120887.2\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.2
23	gb\|AC120886.2\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.2
24	ref\|XM_449910.1\| Candida glabrata CBS138 hypothetical protein (C...	40	6.2
25	gb\|CP000271.1\| Burkholderia xenovorans LB400 chromosome 2, compl...	40	6.2
26	emb\|CR380959.1\| Candida glabrata strain CBS138 chromosome M comp...	40	6.2
27	emb\|AL731589.3\|OSJN00239 Oryza sativa genomic DNA, chromosome 4,...	40	6.2
28	emb\|BX255918.16\| Zebrafish DNA sequence from clone CH211-239I2 i...	40	6.2
29	gb\|DQ283196.1\| Platymantis weberi 12S ribosomal RNA gene, partia...	40	6.2
30	gb\|AE003849.1\| Xylella fastidiosa 9a5c, complete genome	40	6.2
31	dbj\|AP008210.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.2
32	dbj\|AP008217.1\| Oryza sativa (japonica cultivar-group) genomic D...	40	6.2
33	dbj\|BA000045.2\| Gloeobacter violaceus PCC 7421 DNA, complete genome	40	6.2
34	dbj\|BS000071.1\| Pan troglodytes chromosome 22 clone:RP43-104O21,...	40	6.2
35	dbj\|AK121287.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	6.2
36	dbj\|AK107892.1\| Oryza sativa (japonica cultivar-group) cDNA clon...	40	6.2
37	emb\|AL157792.3\|CNS01RG7 Human chromosome 14 DNA sequence BAC R-3...	40	6.2
38	gb\|AC004486.1\|AC004486 Homo sapiens 12q13 PAC RPCI3-432I18 (Rosw...	40	6.2
39	gb\|DP000010.1\| Oryza sativa (japonica cultivar-group) chromosome...	40	6.2

>gb|AY679115.1| Triticum aestivum gigantea 3 (TaGI3) mRNA, complete cds
          Length = 3548

 Score =  537 bits (271), Expect = e-149
 Identities = 294/302 (97%)
 Strand = Plus / Plus

                                                                       
Query: 162 gtttcttgagcaggctcttaaactaccaagtatgtcagcgtcaaatgggaagtggattga 221
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 9   gtttcttgagcaggctcttaaactaccaagtatgtcagtgtcaaatgggaagtggattga 68

                                                                       
Query: 222 tggactccagttctcatcactgttctggcccccgccacacgatgcgcagcagaaacaggc 281
           ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 69  tgggctccagttctcatcactgttctggcccccgccacacgatgtgcagcagaaacaggc 128

                                                                       
Query: 282 acaaattttagcctatgttgagtactttggtcagttcacatctgacagcgagcaattccc 341
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 129 acaaattttagcctatgttgagtactttggtcagttcacatctgacagcgagcaattccc 188

                                                                       
Query: 342 ggaggatgtagctcagctaattcaaacttgctatccatcanaagacaagcggttggtaga 401
           |||||||||||||||||||||||||| || |||||||||| |||| ||||||||||||||
Sbjct: 189 ggaggatgtagctcagctaattcaaagttactatccatcaaaagaaaagcggttggtaga 248

                                                                       
Query: 402 tgaagtattagcaacttttgttctccatcaccccgagcatggtcatgcagttgtacatcc 461
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 249 tgaagtattagcaacttttgttctccatcaccctgagcatggtcatgcagttgtacatcc 308

             
Query: 462 aa 463
           ||
Sbjct: 309 aa 310

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>gb|AY679114.1| Triticum aestivum gigantea 2 (TaGI2) mRNA, complete cds
          Length = 3543

 Score =  537 bits (271), Expect = e-149
 Identities = 294/302 (97%)
 Strand = Plus / Plus

                                                                       
Query: 162 gtttcttgagcaggctcttaaactaccaagtatgtcagcgtcaaatgggaagtggattga 221
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 9   gtttcttgagcaggctcttaaactaccaagtatgtcagtgtcaaatgggaagtggattga 68

                                                                       
Query: 222 tggactccagttctcatcactgttctggcccccgccacacgatgcgcagcagaaacaggc 281
           ||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 69  tgggctccagttctcatcactgttctggcccccgccacacgatgtgcagcagaaacaggc 128

                                                                       
Query: 282 acaaattttagcctatgttgagtactttggtcagttcacatctgacagcgagcaattccc 341
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 129 acaaattttagcctatgttgagtactttggtcagttcacatctgatagcgagcaattccc 188

                                                                       
Query: 342 ggaggatgtagctcagctaattcaaacttgctatccatcanaagacaagcggttggtaga 401
           |||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||||
Sbjct: 189 ggaggatgtagctcagctaattcaaagttgctatccatcaaaagaaaagcggttggtaga 248

                                                                       
Query: 402 tgaagtattagcaacttttgttctccatcaccccgagcatggtcatgcagttgtacatcc 461
           ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 249 tgaagtattagcaacttttgttctccatcaccctgagcatggtcatgcagttgtacatcc 308

             
Query: 462 aa 463
           ||
Sbjct: 309 aa 310

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>gb|AF543844.1| Triticum aestivum gigantea (TaGI1) mRNA, complete cds
          Length = 4012

 Score =  525 bits (265), Expect = e-146
 Identities = 294/304 (96%)
 Strand = Plus / Plus

                                                                       
Query: 160 gagtttcttgagcaggctcttaaactaccaagtatgtcagcgtcaaatgggaagtggatt 219
           |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 165 gagtttcttgagcaggctcttaaactaccaagtatgtcagtgtcaaatgggaagtggatt 224

                                                                       
Query: 220 gatggactccagttctcatcactgttctggcccccgccacacgatgcgcagcagaaacag 279
           ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 225 gatgggctccagttctcatcactgttctggcccccgccacacgatgtgcagcagaaacag 284

                                                                       
Query: 280 gcacaaattttagcctatgttgagtactttggtcagttcacatctgacagcgagcaattc 339
           |||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||
Sbjct: 285 gcacaaattttagcctatgtcgagtactttgggcagttcacatctgacagcgagcaattc 344

                                                                       
Query: 340 ccggaggatgtagctcagctaattcaaacttgctatccatcanaagacaagcggttggta 399
           |||||||||||||||||||||||||||| ||||||||||||| |||| ||||||||||||
Sbjct: 345 ccggaggatgtagctcagctaattcaaagttgctatccatcaaaagaaaagcggttggta 404

                                                                       
Query: 400 gatgaagtattagcaacttttgttctccatcaccccgagcatggtcatgcagttgtacat 459
           ||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||
Sbjct: 405 gatgaagtattagcaacttttgttctccatcaccctgaacatggtcatgcagttgtacat 464

               
Query: 460 ccaa 463
           ||||
Sbjct: 465 ccaa 468

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>gb|AY740523.1| Hordeum vulgare gigantea-like protein (GI) mRNA, complete cds
          Length = 3480

 Score =  523 bits (264), Expect = e-145
 Identities = 269/271 (99%)
 Strand = Plus / Plus

                                                                       
Query: 193 atgtcagcgtcaaatgggaagtggattgatggactccagttctcatcactgttctggccc 252
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1   atgtcagcgtcaaatgggaagtggattgatggactccagttctcatcactgttctggccc 60

                                                                       
Query: 253 ccgccacacgatgcgcagcagaaacaggcacaaattttagcctatgttgagtactttggt 312
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61  ccgccacacgatgcgcagcagaaacaggcacaaattttagcctatgttgagtactttggt 120

                                                                       
Query: 313 cagttcacatctgacagcgagcaattcccggaggatgtagctcagctaattcaaacttgc 372
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 cagttcacatctgacagcgagcaattcccggaggatgtagctcagctaattcaaacttgc 180

                                                                       
Query: 373 tatccatcanaagacaagcggttggtagatgaagtattagcaacttttgttctccatcac 432
           ||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 tatccatcaaaagaaaagcggttggtagatgaagtattagcaacttttgttctccatcac 240

                                          
Query: 433 cccgagcatggtcatgcagttgtacatccaa 463
           |||||||||||||||||||||||||||||||
Sbjct: 241 cccgagcatggtcatgcagttgtacatccaa 271

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>dbj|AK072166.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013134K20, full
           insert sequence
          Length = 4252

 Score =  345 bits (174), Expect = 8e-92
 Identities = 269/301 (89%)
 Strand = Plus / Plus

                                                                       
Query: 161 agtttcttgagcaggctcttaaactaccaagtatgtcagcgtcaaatgggaagtggattg 220
           ||||||||| |||||||||| | ||||||||||||||||| ||||||| |||||||||||
Sbjct: 375 agtttcttgggcaggctcttgagctaccaagtatgtcagcttcaaatgagaagtggattg 434

                                                                       
Query: 221 atggactccagttctcatcactgttctggcccccgccacacgatgcgcagcagaaacagg 280
           |||| ||||||||||||||||||||||||||||| ||||| ||| | || || |||||||
Sbjct: 435 atgggctccagttctcatcactgttctggcccccaccacaggattcacaacaaaaacagg 494

                                                                       
Query: 281 cacaaattttagcctatgttgagtactttggtcagttcacatctgacagcgagcaattcc 340
           |||||||| | |||||||||||||||||||| ||||| ||| ||||||| ||||||||||
Sbjct: 495 cacaaattctggcctatgttgagtactttggccagtttacagctgacagtgagcaattcc 554

                                                                       
Query: 341 cggaggatgtagctcagctaattcaaacttgctatccatcanaagacaagcggttggtag 400
           | || ||| |||||||||||||||||| ||||||||||||| |||| |||||  | ||||
Sbjct: 555 ctgaagatatagctcagctaattcaaagttgctatccatcaaaagaaaagcgccttgtag 614

                                                                       
Query: 401 atgaagtattagcaacttttgttctccatcaccccgagcatggtcatgcagttgtacatc 460
           ||||||||||||||||||||||||| ||||| || |||||||| ||||||||||| ||||
Sbjct: 615 atgaagtattagcaacttttgttcttcatcatcctgagcatggccatgcagttgtgcatc 674

            
Query: 461 c 461
           |
Sbjct: 675 c 675

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>ref|XM_550413.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 4184

 Score =  331 bits (167), Expect = 1e-87
 Identities = 259/290 (89%)
 Strand = Plus / Plus

                                                                       
Query: 172 caggctcttaaactaccaagtatgtcagcgtcaaatgggaagtggattgatggactccag 231
           ||||||||| | ||||||||||||||||| ||||||| ||||||||||||||| ||||||
Sbjct: 417 caggctcttgagctaccaagtatgtcagcttcaaatgagaagtggattgatgggctccag 476

                                                                       
Query: 232 ttctcatcactgttctggcccccgccacacgatgcgcagcagaaacaggcacaaatttta 291
           ||||||||||||||||||||||| ||||| ||| | || || ||||||||||||||| | 
Sbjct: 477 ttctcatcactgttctggcccccaccacaggattcacaacaaaaacaggcacaaattctg 536

                                                                       
Query: 292 gcctatgttgagtactttggtcagttcacatctgacagcgagcaattcccggaggatgta 351
           |||||||||||||||||||| ||||| ||| ||||||| ||||||||||| || ||| ||
Sbjct: 537 gcctatgttgagtactttggccagtttacagctgacagtgagcaattccctgaagatata 596

                                                                       
Query: 352 gctcagctaattcaaacttgctatccatcanaagacaagcggttggtagatgaagtatta 411
           |||||||||||||||| ||||||||||||| |||| |||||  | |||||||||||||||
Sbjct: 597 gctcagctaattcaaagttgctatccatcaaaagaaaagcgccttgtagatgaagtatta 656

                                                             
Query: 412 gcaacttttgttctccatcaccccgagcatggtcatgcagttgtacatcc 461
           |||||||||||||| ||||| || |||||||| ||||||||||| |||||
Sbjct: 657 gcaacttttgttcttcatcatcctgagcatggccatgcagttgtgcatcc 706

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>dbj|AK100147.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023014E02, full
           insert sequence
          Length = 3682

 Score =  331 bits (167), Expect = 1e-87
 Identities = 259/290 (89%)
 Strand = Plus / Plus

                                                                       
Query: 172 caggctcttaaactaccaagtatgtcagcgtcaaatgggaagtggattgatggactccag 231
           ||||||||| | ||||||||||||||||| ||||||| ||||||||||||||| ||||||
Sbjct: 398 caggctcttgagctaccaagtatgtcagcttcaaatgagaagtggattgatgggctccag 457

                                                                       
Query: 232 ttctcatcactgttctggcccccgccacacgatgcgcagcagaaacaggcacaaatttta 291
           ||||||||||||||||||||||| ||||| ||| | || || ||||||||||||||| | 
Sbjct: 458 ttctcatcactgttctggcccccaccacaggattcacaacaaaaacaggcacaaattctg 517

                                                                       
Query: 292 gcctatgttgagtactttggtcagttcacatctgacagcgagcaattcccggaggatgta 351
           |||||||||||||||||||| ||||| ||| ||||||| ||||||||||| || ||| ||
Sbjct: 518 gcctatgttgagtactttggccagtttacagctgacagtgagcaattccctgaagatata 577

                                                                       
Query: 352 gctcagctaattcaaacttgctatccatcanaagacaagcggttggtagatgaagtatta 411
           |||||||||||||||| ||||||||||||| |||| |||||  | |||||||||||||||
Sbjct: 578 gctcagctaattcaaagttgctatccatcaaaagaaaagcgccttgtagatgaagtatta 637

                                                             
Query: 412 gcaacttttgttctccatcaccccgagcatggtcatgcagttgtacatcc 461
           |||||||||||||| ||||| || |||||||| ||||||||||| |||||
Sbjct: 638 gcaacttttgttcttcatcatcctgagcatggccatgcagttgtgcatcc 687

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>dbj|AK067038.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013091I22, full
           insert sequence
          Length = 4185

 Score =  331 bits (167), Expect = 1e-87
 Identities = 259/290 (89%)
 Strand = Plus / Plus

                                                                       
Query: 172 caggctcttaaactaccaagtatgtcagcgtcaaatgggaagtggattgatggactccag 231
           ||||||||| | ||||||||||||||||| ||||||| ||||||||||||||| ||||||
Sbjct: 417 caggctcttgagctaccaagtatgtcagcttcaaatgagaagtggattgatgggctccag 476

                                                                       
Query: 232 ttctcatcactgttctggcccccgccacacgatgcgcagcagaaacaggcacaaatttta 291
           ||||||||||||||||||||||| ||||| ||| | || || ||||||||||||||| | 
Sbjct: 477 ttctcatcactgttctggcccccaccacaggattcacaacaaaaacaggcacaaattctg 536

                                                                       
Query: 292 gcctatgttgagtactttggtcagttcacatctgacagcgagcaattcccggaggatgta 351
           |||||||||||||||||||| ||||| ||| ||||||| ||||||||||| || ||| ||
Sbjct: 537 gcctatgttgagtactttggccagtttacagctgacagtgagcaattccctgaagatata 596

                                                                       
Query: 352 gctcagctaattcaaacttgctatccatcanaagacaagcggttggtagatgaagtatta 411
           |||||||||||||||| ||||||||||||| |||| |||||  | |||||||||||||||
Sbjct: 597 gctcagctaattcaaagttgctatccatcaaaagaaaagcgccttgtagatgaagtatta 656

                                                             
Query: 412 gcaacttttgttctccatcaccccgagcatggtcatgcagttgtacatcc 461
           |||||||||||||| ||||| || |||||||| ||||||||||| |||||
Sbjct: 657 gcaacttttgttcttcatcatcctgagcatggccatgcagttgtgcatcc 706

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>gb|AY740524.1| Hordeum vulgare subsp. vulgare gigantea-like protein (GI) gene,
            complete cds
          Length = 7682

 Score =  240 bits (121), Expect = 3e-60
 Identities = 124/125 (99%)
 Strand = Plus / Plus

                                                                        
Query: 161  agtttcttgagcaggctcttaaactaccaagtatgtcagcgtcaaatgggaagtggattg 220
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1581 agtttcttgagcaggctcttaaactaccaagtatgtcagcgtcaaatgggaagtggattg 1640

                                                                        
Query: 221  atggactccagttctcatcactgttctggcccccgccacacgatgcgcagcagaaacagg 280
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1641 atggactccagttctcatcactgttctggcccccgccacacgatgcgcagcagaaacagg 1700

                 
Query: 281  cacaa 285
             ||||
Sbjct: 1701 tacaa 1705



 Score =  159 bits (80), Expect = 1e-35
 Identities = 80/80 (100%)
 Strand = Plus / Plus

                                                                        
Query: 278  aggcacaaattttagcctatgttgagtactttggtcagttcacatctgacagcgagcaat 337
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1792 aggcacaaattttagcctatgttgagtactttggtcagttcacatctgacagcgagcaat 1851

                                
Query: 338  tcccggaggatgtagctcag 357
            ||||||||||||||||||||
Sbjct: 1852 tcccggaggatgtagctcag 1871



 Score =  105 bits (53), Expect = 1e-19
 Identities = 53/53 (100%)
 Strand = Plus / Plus

                                                                 
Query: 411  agcaacttttgttctccatcaccccgagcatggtcatgcagttgtacatccaa 463
            |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2109 agcaacttttgttctccatcaccccgagcatggtcatgcagttgtacatccaa 2161



 Score =  101 bits (51), Expect = 2e-18
 Identities = 56/58 (96%)
 Strand = Plus / Plus

                                                                      
Query: 355  cagctaattcaaacttgctatccatcanaagacaagcggttggtagatgaagtattag 412
            ||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||
Sbjct: 1965 cagctaattcaaacttgctatccatcaaaagaaaagcggttggtagatgaagtattag 2022

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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score =  143 bits (72), Expect = 6e-31
 Identities = 93/100 (93%)
 Strand = Plus / Minus

                                                                           
Query: 161     agtttcttgagcaggctcttaaactaccaagtatgtcagcgtcaaatgggaagtggattg 220
               ||||||||| |||||||||| | ||||||||||||||||| ||||||| |||||||||||
Sbjct: 4335469 agtttcttgggcaggctcttgagctaccaagtatgtcagcttcaaatgagaagtggattg 4335410

                                                       
Query: 221     atggactccagttctcatcactgttctggcccccgccaca 260
               |||| ||||||||||||||||||||||||||||| |||||
Sbjct: 4335409 atgggctccagttctcatcactgttctggcccccaccaca 4335370



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 71/80 (88%)
 Strand = Plus / Minus

                                                                           
Query: 278     aggcacaaattttagcctatgttgagtactttggtcagttcacatctgacagcgagcaat 337
               ||||||||||| | |||||||||||||||||||| ||||| ||| ||||||| |||||||
Sbjct: 4335260 aggcacaaattctggcctatgttgagtactttggccagtttacagctgacagtgagcaat 4335201

                                   
Query: 338     tcccggaggatgtagctcag 357
               |||| || ||| ||||||||
Sbjct: 4335200 tccctgaagatatagctcag 4335181



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 52/58 (89%)
 Strand = Plus / Minus

                                                                         
Query: 355     cagctaattcaaacttgctatccatcanaagacaagcggttggtagatgaagtattag 412
               ||||||||||||| ||||||||||||| |||| |||||  | ||||||||||||||||
Sbjct: 4335091 cagctaattcaaagttgctatccatcaaaagaaaagcgccttgtagatgaagtattag 4335034



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                                  
Query: 411     agcaacttttgttctccatcaccccgagcatggtcatgcagttgtacatcc 461
               ||||||||||||||| ||||| || |||||||| ||||||||||| |||||
Sbjct: 4334957 agcaacttttgttcttcatcatcctgagcatggccatgcagttgtgcatcc 4334907



 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 101      atcccgtcgccggcgccgccg 121
                |||||||||||||||||||||
Sbjct: 38443545 atcccgtcgccggcgccgccg 38443525

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>dbj|AP003047.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0666G04
          Length = 141983

 Score =  143 bits (72), Expect = 6e-31
 Identities = 93/100 (93%)
 Strand = Plus / Minus

                                                                          
Query: 161    agtttcttgagcaggctcttaaactaccaagtatgtcagcgtcaaatgggaagtggattg 220
              ||||||||| |||||||||| | ||||||||||||||||| ||||||| |||||||||||
Sbjct: 115239 agtttcttgggcaggctcttgagctaccaagtatgtcagcttcaaatgagaagtggattg 115180

                                                      
Query: 221    atggactccagttctcatcactgttctggcccccgccaca 260
              |||| ||||||||||||||||||||||||||||| |||||
Sbjct: 115179 atgggctccagttctcatcactgttctggcccccaccaca 115140



 Score = 87.7 bits (44), Expect = 3e-14
 Identities = 71/80 (88%)
 Strand = Plus / Minus

                                                                          
Query: 278    aggcacaaattttagcctatgttgagtactttggtcagttcacatctgacagcgagcaat 337
              ||||||||||| | |||||||||||||||||||| ||||| ||| ||||||| |||||||
Sbjct: 115030 aggcacaaattctggcctatgttgagtactttggccagtttacagctgacagtgagcaat 114971

                                  
Query: 338    tcccggaggatgtagctcag 357
              |||| || ||| ||||||||
Sbjct: 114970 tccctgaagatatagctcag 114951



 Score = 69.9 bits (35), Expect = 7e-09
 Identities = 52/58 (89%)
 Strand = Plus / Minus

                                                                        
Query: 355    cagctaattcaaacttgctatccatcanaagacaagcggttggtagatgaagtattag 412
              ||||||||||||| ||||||||||||| |||| |||||  | ||||||||||||||||
Sbjct: 114861 cagctaattcaaagttgctatccatcaaaagaaaagcgccttgtagatgaagtattag 114804



 Score = 61.9 bits (31), Expect = 2e-06
 Identities = 46/51 (90%)
 Strand = Plus / Minus

                                                                 
Query: 411    agcaacttttgttctccatcaccccgagcatggtcatgcagttgtacatcc 461
              ||||||||||||||| ||||| || |||||||| ||||||||||| |||||
Sbjct: 114727 agcaacttttgttcttcatcatcctgagcatggccatgcagttgtgcatcc 114677

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>gb|AC148397.13| Medicago truncatula clone mth2-22h4, complete sequence
          Length = 131213

 Score = 46.1 bits (23), Expect = 0.10
 Identities = 41/47 (87%)
 Strand = Plus / Minus

                                                             
Query: 411    agcaacttttgttctccatcaccccgagcatggtcatgcagttgtac 457
              |||||| ||||| || ||||| || |||||||| |||||||||||||
Sbjct: 103591 agcaacatttgtccttcatcatccagagcatgggcatgcagttgtac 103545

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>dbj|AB210848.1| Lemna gibba LgGI H1 mRNA for GI homologue, complete cds
          Length = 3936

 Score = 44.1 bits (22), Expect = 0.40
 Identities = 40/46 (86%)
 Strand = Plus / Plus

                                                         
Query: 398 tagatgaagtattagcaacttttgttctccatcaccccgagcatgg 443
           ||||||||||||| || |||||||| || ||||| || ||||||||
Sbjct: 617 tagatgaagtattggcgacttttgtgcttcatcatccagagcatgg 662

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>gb|AY022829.1| Oryza sativa microsatellite MRG5154 containing (CGC)X9, genomic
           sequence
          Length = 227

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 101 atcccgtcgccggcgccgccg 121
           |||||||||||||||||||||
Sbjct: 185 atcccgtcgccggcgccgccg 205

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>gb|AF229199.1|AF229199 Oryza sativa chromosome 1 clone OSJNBa0048I01, complete sequence
          Length = 193444

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 101   atcccgtcgccggcgccgccg 121
             |||||||||||||||||||||
Sbjct: 36642 atcccgtcgccggcgccgccg 36622

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>dbj|AP003379.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0408G07
          Length = 126631

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 101   atcccgtcgccggcgccgccg 121
             |||||||||||||||||||||
Sbjct: 28960 atcccgtcgccggcgccgccg 28940

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>dbj|AK100276.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023073G17, full
           insert sequence
          Length = 2340

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 101 atcccgtcgccggcgccgccg 121
           |||||||||||||||||||||
Sbjct: 202 atcccgtcgccggcgccgccg 222

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>gb|AE009442.1| Xylella fastidiosa Temecula1, complete genome
          Length = 2519802

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                    
Query: 260     acgatgcgcagcagaaacagg 280
               |||||||||||||||||||||
Sbjct: 1875843 acgatgcgcagcagaaacagg 1875863

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>gb|AC155340.1| Brassica rapa subsp. pekinensis chromosome Cytogenetic chromosome 1 clone
              KBrH020D15, complete sequence
          Length = 143633

 Score = 42.1 bits (21), Expect = 1.6
 Identities = 27/29 (93%)
 Strand = Plus / Minus

                                           
Query: 295    tatgttgagtactttggtcagttcacatc 323
              ||||| || ||||||||||||||||||||
Sbjct: 128671 tatgtcgaatactttggtcagttcacatc 128643



 Score = 40.1 bits (20), Expect = 6.2
 Identities = 29/32 (90%)
 Strand = Plus / Minus

                                              
Query: 418    tttgttctccatcaccccgagcatggtcatgc 449
              ||||| |||||||| || ||||||||||||||
Sbjct: 128377 tttgtactccatcatcctgagcatggtcatgc 128346

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>ref|XM_474638.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 438

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 102 tcccgtcgccggcgccgccg 121
           ||||||||||||||||||||
Sbjct: 151 tcccgtcgccggcgccgccg 132

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>gb|AC183964.3| Pan troglodytes BAC clone CH251-654L7 from chromosome 12, complete
              sequence
          Length = 213075

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 332    agcaattcccggaggatgta 351
              ||||||||||||||||||||
Sbjct: 136300 agcaattcccggaggatgta 136281

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>gb|AC120887.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
              OSJNBa0088K21, complete sequence
          Length = 153239

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 124    tcgccgcccgagctccgtat 143
              ||||||||||||||||||||
Sbjct: 118699 tcgccgcccgagctccgtat 118680

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>gb|AC120886.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone
             OSJNBa0068E24, complete sequence
          Length = 141492

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 124   tcgccgcccgagctccgtat 143
             ||||||||||||||||||||
Sbjct: 11489 tcgccgcccgagctccgtat 11470

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>ref|XM_449910.1| Candida glabrata CBS138 hypothetical protein (CAGL0M13035g) partial
           mRNA
          Length = 1779

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 161 agtttcttgagcaggctctt 180
           ||||||||||||||||||||
Sbjct: 729 agtttcttgagcaggctctt 710

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>gb|CP000271.1| Burkholderia xenovorans LB400 chromosome 2, complete sequence
          Length = 3363523

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 95      cgcgcaatcccgtcgccggcgccg 118
               ||||||||| ||||||||||||||
Sbjct: 2676494 cgcgcaatctcgtcgccggcgccg 2676517

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>emb|CR380959.1| Candida glabrata strain CBS138 chromosome M complete sequence
          Length = 1400893

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 161     agtttcttgagcaggctctt 180
               ||||||||||||||||||||
Sbjct: 1283808 agtttcttgagcaggctctt 1283827

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>emb|AL731589.3|OSJN00239 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0039G19,
             complete sequence
          Length = 144144

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 102   tcccgtcgccggcgccgccg 121
             ||||||||||||||||||||
Sbjct: 76672 tcccgtcgccggcgccgccg 76653

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>emb|BX255918.16| Zebrafish DNA sequence from clone CH211-239I2 in linkage group 11,
              complete sequence
          Length = 189958

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 401    atgaagtattagcaacttttgttc 424
              ||||||||| ||||||||||||||
Sbjct: 136303 atgaagtataagcaacttttgttc 136280

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>gb|DQ283196.1| Platymantis weberi 12S ribosomal RNA gene, partial sequence;
           tRNA-Val gene, complete sequence; and 16S ribosomal RNA
           gene, partial sequence; mitochondrial
          Length = 2395

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 277 caggcacaaattttagccta 296
           ||||||||||||||||||||
Sbjct: 107 caggcacaaattttagccta 126

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>gb|AE003849.1| Xylella fastidiosa 9a5c, complete genome
          Length = 2679306

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                      
Query: 260    acgatgcgcagcagaaacaggcac 283
              |||||||||||||||||| |||||
Sbjct: 472233 acgatgcgcagcagaaaccggcac 472210

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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
               sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 102     tcccgtcgccggcgccgccg 121
               ||||||||||||||||||||
Sbjct: 5100399 tcccgtcgccggcgccgccg 5100380

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>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete
                sequence
          Length = 28386948

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 124      tcgccgcccgagctccgtat 143
                ||||||||||||||||||||
Sbjct: 22858982 tcgccgcccgagctccgtat 22858963

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>dbj|BA000045.2| Gloeobacter violaceus PCC 7421 DNA, complete genome
          Length = 4659019

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 113     gcgccgccgattcgccgccc 132
               ||||||||||||||||||||
Sbjct: 2936031 gcgccgccgattcgccgccc 2936012

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>dbj|BS000071.1| Pan troglodytes chromosome 22 clone:RP43-104O21, map 22, complete
             sequences
          Length = 153441

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 283   caaattttagcctatgttga 302
             ||||||||||||||||||||
Sbjct: 18787 caaattttagcctatgttga 18768

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>dbj|AK121287.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023108P15, full
            insert sequence
          Length = 6490

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 102  tcccgtcgccggcgccgccg 121
            ||||||||||||||||||||
Sbjct: 5902 tcccgtcgccggcgccgccg 5921

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>dbj|AK107892.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-134-E09, full
           insert sequence
          Length = 735

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 102 tcccgtcgccggcgccgccg 121
           ||||||||||||||||||||
Sbjct: 224 tcccgtcgccggcgccgccg 205

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>emb|AL157792.3|CNS01RG7 Human chromosome 14 DNA sequence BAC R-388M7 of library RPCI-11 from
             chromosome 14 of Homo sapiens (Human), complete sequence
          Length = 194760

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 160   gagtttcttgagcaggctct 179
             ||||||||||||||||||||
Sbjct: 78142 gagtttcttgagcaggctct 78161

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>gb|AC004486.1|AC004486 Homo sapiens 12q13 PAC RPCI3-432I18 (Roswell Park Cancer Institute
             Human PAC library) complete sequence
          Length = 92800

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 332   agcaattcccggaggatgta 351
             ||||||||||||||||||||
Sbjct: 19173 agcaattcccggaggatgta 19192

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>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence
          Length = 28369397

 Score = 40.1 bits (20), Expect = 6.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 124      tcgccgcccgagctccgtat 143
                ||||||||||||||||||||
Sbjct: 23168892 tcgccgcccgagctccgtat 23168873


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,627,154
Number of Sequences: 3902068
Number of extensions: 2627154
Number of successful extensions: 54929
Number of sequences better than 10.0: 39
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 54568
Number of HSP's gapped (non-prelim): 361
length of query: 463
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 441
effective length of database: 17,147,199,772
effective search space: 7561915099452
effective search space used: 7561915099452
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result