ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl42a10
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_464062.1| Oryza sativa (japonica cultivar-group), mRNA 260 3e-66
2dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 260 3e-66
3dbj|AP005647.3| Oryza sativa (japonica cultivar-group) genomic D... 260 3e-66
4dbj|AP005474.3| Oryza sativa (japonica cultivar-group) genomic D... 260 3e-66
5gb|AC151614.2| Emiliania huxleyi clone JGIACCU-13K1, complete se... 50 0.005
6ref|XM_751791.1| Ustilago maydis 521 hypothetical protein (UM007... 48 0.019
7dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 46 0.076
8dbj|AP004707.4| Oryza sativa (japonica cultivar-group) genomic D... 46 0.076
9ref|XM_469430.1| Oryza sativa (japonica cultivar-group), mRNA 44 0.30
10gb|AC091670.7| Oryza sativa (japonica cultivar-group) chromosome... 44 0.30
11gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 44 0.30
12gb|AC133334.8| Oryza sativa chromosome 3 BAC OSJNBa0004L11 genom... 44 0.30
13dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.30
14dbj|AK108055.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.30
15dbj|AK106157.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.30
16dbj|AK064270.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.30
17ref|XM_469821.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.7
18ref|XM_478822.1| Oryza sativa (japonica cultivar-group), mRNA 40 4.7
19ref|XM_473342.1| Oryza sativa (japonica cultivar-group), predic... 40 4.7
20gb|AC121363.2| Oryza sativa (japonica cultivar-group) chromosome... 40 4.7
21gb|AC104272.5| Oryza sativa (japonica cultivar-group) chromosome... 40 4.7
22gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, comp... 40 4.7
23gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, com... 40 4.7
24gb|AC135923.2| Oryza sativa (japonica cultivar-group) chromosome... 40 4.7
25gb|AC135919.2| Oryza sativa (japonica cultivar-group) chromosome... 40 4.7
26gb|AC120509.3| Oryza sativa chromosome 3 BAC OSJNBb0081K01 genom... 40 4.7
27gb|AC079887.17| Oryza sativa (japonica cultivar-group) chromosom... 40 4.7
28emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromos... 40 4.7
29emb|AL939116.1|SCO939116 Streptomyces coelicolor A3(2) complete ... 40 4.7
30emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete ... 40 4.7
31emb|AL606459.5|OSJN00020 Oryza sativa genomic DNA, chromosome 4,... 40 4.7
32gb|AC145821.16| Papio anubis clone rp41-103i16, complete sequence 40 4.7
33gb|AF232689.2| Rat cytomegalovirus Maastricht, complete genome 40 4.7
34tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome 40 4.7
35dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
36dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
37dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
38dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
39gb|AF298586.1|AF298586 Pseudorabies virus Ea early protein EPO g... 40 4.7
40gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome 40 4.7
41dbj|AP005968.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
42dbj|AP003507.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
43dbj|AP003579.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
44dbj|AP003712.4| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
45dbj|AP004781.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
46dbj|AP003711.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
47dbj|AP005127.5| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
48dbj|AP003758.4| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
49dbj|AP004854.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
50dbj|AK119909.1| Oryza sativa (japonica cultivar-group) cDNA clon... 40 4.7
51dbj|AP003845.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
52dbj|AP003995.2| Oryza sativa (japonica cultivar-group) genomic D... 40 4.7
53emb|AJ937741.1| Streptomyces ambofaciens ATCC 23877 right termin... 40 4.7
54emb|AJ937740.1| Streptomyces ambofaciens ATCC 23877 left termina... 40 4.7
55gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome 40 4.7
56gb|DQ289493.1| Synthetic construct EpoC (epoC) gene, complete cds 40 4.7
57gb|U27486.1|SHU27486 Suid herpesvirus 1 early protein 0 EP0 mRNA... 40 4.7
58gb|M57505.1|SH1LLT Pseudorabies virus ORF1, ORF2, and ORF3 mRNA,... 40 4.7
59gb|M57504.1|SH1EPO Pseudorabies virus EPO mRNA, complete cds 40 4.7 
>ref|XM_464062.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 3705

 Score =  260 bits (131), Expect = 3e-66
 Identities = 164/175 (93%)
 Strand = Plus / Plus

                                                                       
Query: 179 tccacgcaggagatcgccgtcgcccgcggcggcacgctcgacctcctccgcccggacccg 238
           |||||||||||||||||||| ||||| |||  ||| ||||| ||||||||||| ||||||
Sbjct: 121 tccacgcaggagatcgccgtggcccgtggcaccactctcgagctcctccgccccgacccg 180

                                                                       
Query: 239 gagacgggccgactccgcacgctcctctccgtcgacgtcttcggcgccatccgctcgctc 298
           ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 gagaccggccgcctccgcacgctcctctccgtcgacgtcttcggcgccatccgctcgctc 240

                                                                  
Query: 299 gcccagttccgcctcacgggggccaccaaggactacctcgtcgtcggctccgact 353
           ||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 241 gcccagttccgcctcaccggcgccaccaaggactacctcgtcgtcggctccgact 295



 Score =  155 bits (78), Expect = 1e-34
 Identities = 87/90 (96%)
 Strand = Plus / Plus

                                                                       
Query: 74  atgtacctctacagcctgacgctgcagagggcgacgggcgccgtgtgcgccgtcatcggc 133
           ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct: 1   atgtacctctacagcctgacgctgcagcgggcgacgggcgcggtgtgcgccgtcatcggc 60

                                         
Query: 134 agcttcagcggccgcgactcgaagaagtcg 163
           ||||||||||| ||||||||||||||||||
Sbjct: 61  agcttcagcgggcgcgactcgaagaagtcg 90
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>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
               sequence
          Length = 35954743

 Score =  260 bits (131), Expect = 3e-66
 Identities = 164/175 (93%)
 Strand = Plus / Plus

                                                                           
Query: 179     tccacgcaggagatcgccgtcgcccgcggcggcacgctcgacctcctccgcccggacccg 238
               |||||||||||||||||||| ||||| |||  ||| ||||| ||||||||||| ||||||
Sbjct: 1978685 tccacgcaggagatcgccgtggcccgtggcaccactctcgagctcctccgccccgacccg 1978744

                                                                           
Query: 239     gagacgggccgactccgcacgctcctctccgtcgacgtcttcggcgccatccgctcgctc 298
               ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1978745 gagaccggccgcctccgcacgctcctctccgtcgacgtcttcggcgccatccgctcgctc 1978804

                                                                      
Query: 299     gcccagttccgcctcacgggggccaccaaggactacctcgtcgtcggctccgact 353
               ||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 1978805 gcccagttccgcctcaccggcgccaccaaggactacctcgtcgtcggctccgact 1978859



 Score =  161 bits (81), Expect = 2e-36
 Identities = 90/93 (96%)
 Strand = Plus / Plus

                                                                           
Query: 71      gccatgtacctctacagcctgacgctgcagagggcgacgggcgccgtgtgcgccgtcatc 130
               |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 1978562 gccatgtacctctacagcctgacgctgcagcgggcgacgggcgcggtgtgcgccgtcatc 1978621

                                                
Query: 131     ggcagcttcagcggccgcgactcgaagaagtcg 163
               |||||||||||||| ||||||||||||||||||
Sbjct: 1978622 ggcagcttcagcgggcgcgactcgaagaagtcg 1978654



 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 189      agatcgccgtcgcccgcggc 208
                ||||||||||||||||||||
Sbjct: 13389802 agatcgccgtcgcccgcggc 13389821
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>dbj|AP005647.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
             clone:OSJNBa0026E05
          Length = 159860

 Score =  260 bits (131), Expect = 3e-66
 Identities = 164/175 (93%)
 Strand = Plus / Plus

                                                                         
Query: 179   tccacgcaggagatcgccgtcgcccgcggcggcacgctcgacctcctccgcccggacccg 238
             |||||||||||||||||||| ||||| |||  ||| ||||| ||||||||||| ||||||
Sbjct: 28893 tccacgcaggagatcgccgtggcccgtggcaccactctcgagctcctccgccccgacccg 28952

                                                                         
Query: 239   gagacgggccgactccgcacgctcctctccgtcgacgtcttcggcgccatccgctcgctc 298
             ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 28953 gagaccggccgcctccgcacgctcctctccgtcgacgtcttcggcgccatccgctcgctc 29012

                                                                    
Query: 299   gcccagttccgcctcacgggggccaccaaggactacctcgtcgtcggctccgact 353
             ||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 29013 gcccagttccgcctcaccggcgccaccaaggactacctcgtcgtcggctccgact 29067



 Score =  161 bits (81), Expect = 2e-36
 Identities = 90/93 (96%)
 Strand = Plus / Plus

                                                                         
Query: 71    gccatgtacctctacagcctgacgctgcagagggcgacgggcgccgtgtgcgccgtcatc 130
             |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 28770 gccatgtacctctacagcctgacgctgcagcgggcgacgggcgcggtgtgcgccgtcatc 28829

                                              
Query: 131   ggcagcttcagcggccgcgactcgaagaagtcg 163
             |||||||||||||| ||||||||||||||||||
Sbjct: 28830 ggcagcttcagcgggcgcgactcgaagaagtcg 28862
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>dbj|AP005474.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OSJNBa0081C13
          Length = 144624

 Score =  260 bits (131), Expect = 3e-66
 Identities = 164/175 (93%)
 Strand = Plus / Plus

                                                                          
Query: 179    tccacgcaggagatcgccgtcgcccgcggcggcacgctcgacctcctccgcccggacccg 238
              |||||||||||||||||||| ||||| |||  ||| ||||| ||||||||||| ||||||
Sbjct: 118246 tccacgcaggagatcgccgtggcccgtggcaccactctcgagctcctccgccccgacccg 118305

                                                                          
Query: 239    gagacgggccgactccgcacgctcctctccgtcgacgtcttcggcgccatccgctcgctc 298
              ||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 118306 gagaccggccgcctccgcacgctcctctccgtcgacgtcttcggcgccatccgctcgctc 118365

                                                                     
Query: 299    gcccagttccgcctcacgggggccaccaaggactacctcgtcgtcggctccgact 353
              ||||||||||||||||| || ||||||||||||||||||||||||||||||||||
Sbjct: 118366 gcccagttccgcctcaccggcgccaccaaggactacctcgtcgtcggctccgact 118420



 Score =  161 bits (81), Expect = 2e-36
 Identities = 90/93 (96%)
 Strand = Plus / Plus

                                                                          
Query: 71     gccatgtacctctacagcctgacgctgcagagggcgacgggcgccgtgtgcgccgtcatc 130
              |||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct: 118123 gccatgtacctctacagcctgacgctgcagcgggcgacgggcgcggtgtgcgccgtcatc 118182

                                               
Query: 131    ggcagcttcagcggccgcgactcgaagaagtcg 163
              |||||||||||||| ||||||||||||||||||
Sbjct: 118183 ggcagcttcagcgggcgcgactcgaagaagtcg 118215
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>gb|AC151614.2| Emiliania huxleyi clone JGIACCU-13K1, complete sequence
          Length = 42022

 Score = 50.1 bits (25), Expect = 0.005
 Identities = 25/25 (100%)
 Strand = Plus / Minus

                                      
Query: 329   gactacctcgtcgtcggctccgact 353
             |||||||||||||||||||||||||
Sbjct: 21101 gactacctcgtcgtcggctccgact 21077
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>ref|XM_751791.1| Ustilago maydis 521 hypothetical protein (UM00737.1) partial mRNA
          Length = 3666

 Score = 48.1 bits (24), Expect = 0.019
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                       
Query: 73  catgtacctctacagcctgacgctgcag 100
           |||||||||||||| |||||||||||||
Sbjct: 9   catgtacctctacaacctgacgctgcag 36
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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
                sequence
          Length = 28434780

 Score = 46.1 bits (23), Expect = 0.076
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                       
Query: 189      agatcgccgtcgcccgcggcggc 211
                |||||||||||||||||||||||
Sbjct: 22573165 agatcgccgtcgcccgcggcggc 22573143
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>dbj|AP004707.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0690E03
          Length = 139924

 Score = 46.1 bits (23), Expect = 0.076
 Identities = 23/23 (100%)
 Strand = Plus / Minus

                                    
Query: 189   agatcgccgtcgcccgcggcggc 211
             |||||||||||||||||||||||
Sbjct: 46666 agatcgccgtcgcccgcggcggc 46644
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>ref|XM_469430.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1584

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 82  ctacagcctgacgctgcagagg 103
           ||||||||||||||||||||||
Sbjct: 668 ctacagcctgacgctgcagagg 689
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>gb|AC091670.7| Oryza sativa (japonica cultivar-group) chromosome 3 clone OJ1212_C08
             map R2847, complete sequence
          Length = 100918

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                   
Query: 82    ctacagcctgacgctgcagagg 103
             ||||||||||||||||||||||
Sbjct: 61172 ctacagcctgacgctgcagagg 61193
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>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3
          Length = 36102668

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 82       ctacagcctgacgctgcagagg 103
                ||||||||||||||||||||||
Sbjct: 27925444 ctacagcctgacgctgcagagg 27925465



 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 189      agatcgccgtcgcccgcggc 208
                ||||||||||||||||||||
Sbjct: 30934666 agatcgccgtcgcccgcggc 30934647
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>gb|AC133334.8| Oryza sativa chromosome 3 BAC OSJNBa0004L11 genomic sequence, complete
             sequence
          Length = 133889

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 82    ctacagcctgacgctgcagagg 103
             ||||||||||||||||||||||
Sbjct: 99582 ctacagcctgacgctgcagagg 99561
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>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete
                sequence
          Length = 36192742

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                      
Query: 82       ctacagcctgacgctgcagagg 103
                ||||||||||||||||||||||
Sbjct: 28016768 ctacagcctgacgctgcagagg 28016789



 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 189      agatcgccgtcgcccgcggc 208
                ||||||||||||||||||||
Sbjct: 31025189 agatcgccgtcgcccgcggc 31025170
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>dbj|AK108055.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-137-H10, full
           insert sequence
          Length = 1706

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                 
Query: 82  ctacagcctgacgctgcagagg 103
           ||||||||||||||||||||||
Sbjct: 767 ctacagcctgacgctgcagagg 746
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>dbj|AK106157.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-208-A06, full
           insert sequence
          Length = 1573

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 196 cgtcgcccgcggcggcacgctc 217
           ||||||||||||||||||||||
Sbjct: 553 cgtcgcccgcggcggcacgctc 574
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>dbj|AK064270.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-105-E07, full
           insert sequence
          Length = 1586

 Score = 44.1 bits (22), Expect = 0.30
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 82  ctacagcctgacgctgcagagg 103
           ||||||||||||||||||||||
Sbjct: 670 ctacagcctgacgctgcagagg 691
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>ref|XM_469821.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2280

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 189  agatcgccgtcgcccgcggc 208
            ||||||||||||||||||||
Sbjct: 1718 agatcgccgtcgcccgcggc 1699
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>ref|XM_478822.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1782

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 198  tcgcccgcggcggcacgctc 217
            ||||||||||||||||||||
Sbjct: 1106 tcgcccgcggcggcacgctc 1125
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>ref|XM_473342.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2655

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 189  agatcgccgtcgcccgcggc 208
            ||||||||||||||||||||
Sbjct: 2318 agatcgccgtcgcccgcggc 2299
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>gb|AC121363.2| Oryza sativa (japonica cultivar-group) chromosome 5 clone OSJNBa0036C12,
              complete sequence
          Length = 145517

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 189    agatcgccgtcgcccgcggc 208
              ||||||||||||||||||||
Sbjct: 133019 agatcgccgtcgcccgcggc 133038
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>gb|AC104272.5| Oryza sativa (japonica cultivar-group) chromosome 5 clone OJ1045_C06,
             complete sequence
          Length = 143130

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 189   agatcgccgtcgcccgcggc 208
             ||||||||||||||||||||
Sbjct: 21405 agatcgccgtcgcccgcggc 21424
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>gb|CP000010.1| Burkholderia mallei ATCC 23344 chromosome 1, complete sequence
          Length = 3510148

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 189     agatcgccgtcgcccgcggcggca 212
               |||||||||||||||||| |||||
Sbjct: 1053047 agatcgccgtcgcccgcgacggca 1053024
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>gb|CP000124.1| Burkholderia pseudomallei 1710b chromosome I, complete sequence
          Length = 4126292

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                       
Query: 189     agatcgccgtcgcccgcggcggca 212
               |||||||||||||||||| |||||
Sbjct: 2512714 agatcgccgtcgcccgcgacggca 2512737
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>gb|AC135923.2| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0479C09,
              complete sequence
          Length = 156776

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 189    agatcgccgtcgcccgcggc 208
              ||||||||||||||||||||
Sbjct: 150960 agatcgccgtcgcccgcggc 150979
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>gb|AC135919.2| Oryza sativa (japonica cultivar-group) chromosome 5 PAC clone P0014F09,
             complete sequence
          Length = 151345

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 189   agatcgccgtcgcccgcggc 208
             ||||||||||||||||||||
Sbjct: 46601 agatcgccgtcgcccgcggc 46620
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>gb|AC120509.3| Oryza sativa chromosome 3 BAC OSJNBb0081K01 genomic sequence,
            complete sequence
          Length = 122496

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 189  agatcgccgtcgcccgcggc 208
            ||||||||||||||||||||
Sbjct: 8424 agatcgccgtcgcccgcggc 8443
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>gb|AC079887.17| Oryza sativa (japonica cultivar-group) chromosome 3 BAC OSJNBa0040E01
              genomic sequence, complete sequence
          Length = 168759

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 189    agatcgccgtcgcccgcggc 208
              ||||||||||||||||||||
Sbjct: 161398 agatcgccgtcgcccgcggc 161417
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>emb|BX571965.1| Burkholderia pseudomallei strain K96243, chromosome 1, complete sequence
          Length = 4074542

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 189     agatcgccgtcgcccgcggcggca 212
               |||||||||||||||||| |||||
Sbjct: 1869936 agatcgccgtcgcccgcgacggca 1869913
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>emb|AL939116.1|SCO939116 Streptomyces coelicolor A3(2) complete genome; segment 13/29
          Length = 293050

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 199    cgcccgcggcggcacgctcgacct 222
              |||||||||||||| |||||||||
Sbjct: 261102 cgcccgcggcggcaagctcgacct 261125
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>emb|AL939114.1|SCO939114 Streptomyces coelicolor A3(2) complete genome; segment 11/29
          Length = 313800

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 112   cgccgtgtgcgccgtcatcg 131
             ||||||||||||||||||||
Sbjct: 76674 cgccgtgtgcgccgtcatcg 76655
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>emb|AL606459.5|OSJN00020 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0091D06,
              complete sequence
          Length = 174570

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 189    agatcgccgtcgcccgcggc 208
              ||||||||||||||||||||
Sbjct: 142418 agatcgccgtcgcccgcggc 142437
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>gb|AC145821.16| Papio anubis clone rp41-103i16, complete sequence
          Length = 169553

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                    
Query: 167  gccgccgggtcctccacgcaggag 190
            ||||||||||||||| ||||||||
Sbjct: 3302 gccgccgggtcctccccgcaggag 3325
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>gb|AF232689.2| Rat cytomegalovirus Maastricht, complete genome
          Length = 230138

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 192   tcgccgtcgcccgcggcggc 211
             ||||||||||||||||||||
Sbjct: 16268 tcgccgtcgcccgcggcggc 16287
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>tpg|BK001744.1| TPA: TPA_exp: Suid herpesvirus 1, complete genome
          Length = 143461

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 97    gcagagggcgacgggcgccg 116
             ||||||||||||||||||||
Sbjct: 96590 gcagagggcgacgggcgccg 96609
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>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 189      agatcgccgtcgcccgcggc 208
                ||||||||||||||||||||
Sbjct: 26921358 agatcgccgtcgcccgcggc 26921377
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>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete
                sequence
          Length = 29644043

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 198      tcgcccgcggcggcacgctc 217
                ||||||||||||||||||||
Sbjct: 23221554 tcgcccgcggcggcacgctc 23221535



 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 189      agatcgccgtcgcccgcggc 208
                ||||||||||||||||||||
Sbjct: 19165166 agatcgccgtcgcccgcggc 19165185



 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 189      agatcgccgtcgcccgcggc 208
                ||||||||||||||||||||
Sbjct: 19121086 agatcgccgtcgcccgcggc 19121105



 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 189      agatcgccgtcgcccgcggc 208
                ||||||||||||||||||||
Sbjct: 18888155 agatcgccgtcgcccgcggc 18888136
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>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete
                sequence
          Length = 30731886

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 189      agatcgccgtcgcccgcggc 208
                ||||||||||||||||||||
Sbjct: 26536492 agatcgccgtcgcccgcggc 26536473



 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                            
Query: 185      caggagatcgccgtcgcccgcggcggca 212
                ||||||||||||| |||| |||||||||
Sbjct: 24182938 caggagatcgccggcgccagcggcggca 24182911



 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 189      agatcgccgtcgcccgcggc 208
                ||||||||||||||||||||
Sbjct: 12087613 agatcgccgtcgcccgcggc 12087632
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>dbj|AP008211.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 5, complete
                sequence
          Length = 29737217

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 189      agatcgccgtcgcccgcggc 208
                ||||||||||||||||||||
Sbjct: 16808909 agatcgccgtcgcccgcggc 16808928



 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                    
Query: 189      agatcgccgtcgcccgcggc 208
                ||||||||||||||||||||
Sbjct: 11825320 agatcgccgtcgcccgcggc 11825339
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>gb|AF298586.1|AF298586 Pseudorabies virus Ea early protein EPO gene, complete cds
          Length = 1233

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 97   gcagagggcgacgggcgccg 116
            ||||||||||||||||||||
Sbjct: 1124 gcagagggcgacgggcgccg 1105
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>gb|CP000157.1| Erythrobacter litoralis HTCC2594, complete genome
          Length = 3052398

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 199     cgcccgcggcggcacgctcgacct 222
               ||||||||||||||||| ||||||
Sbjct: 2189032 cgcccgcggcggcacgcgcgacct 2189009
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>dbj|AP005968.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC
              clone:B1156C07
          Length = 182153

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 189    agatcgccgtcgcccgcggc 208
              ||||||||||||||||||||
Sbjct: 136476 agatcgccgtcgcccgcggc 136495
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>dbj|AP003507.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0468A12
          Length = 143018

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 189   agatcgccgtcgcccgcggc 208
             ||||||||||||||||||||
Sbjct: 30402 agatcgccgtcgcccgcggc 30421
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>dbj|AP003579.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0709F06
          Length = 170964

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 189    agatcgccgtcgcccgcggc 208
              ||||||||||||||||||||
Sbjct: 148531 agatcgccgtcgcccgcggc 148512
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>dbj|AP003712.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0460H04
          Length = 166490

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 189   agatcgccgtcgcccgcggc 208
             ||||||||||||||||||||
Sbjct: 70145 agatcgccgtcgcccgcggc 70126
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>dbj|AP004781.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
             clone:P0691E09
          Length = 149859

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                         
Query: 185   caggagatcgccgtcgcccgcggcggca 212
             ||||||||||||| |||| |||||||||
Sbjct: 13027 caggagatcgccggcgccagcggcggca 13000
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>dbj|AP003711.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC
              clone:P0417G12
          Length = 163568

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Minus

                                          
Query: 185    caggagatcgccgtcgcccgcggcggca 212
              ||||||||||||| |||| |||||||||
Sbjct: 116396 caggagatcgccggcgccagcggcggca 116369
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>dbj|AP005127.5| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OSJNBb0062D12
          Length = 155408

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 189   agatcgccgtcgcccgcggc 208
             ||||||||||||||||||||
Sbjct: 88561 agatcgccgtcgcccgcggc 88580



 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 189   agatcgccgtcgcccgcggc 208
             ||||||||||||||||||||
Sbjct: 44481 agatcgccgtcgcccgcggc 44500
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>dbj|AP003758.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1562_B11
          Length = 112144

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 198   tcgcccgcggcggcacgctc 217
             ||||||||||||||||||||
Sbjct: 84468 tcgcccgcggcggcacgctc 84449
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>dbj|AP004854.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC
              clone:OJ1521_G01
          Length = 144102

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 189    agatcgccgtcgcccgcggc 208
              ||||||||||||||||||||
Sbjct: 115053 agatcgccgtcgcccgcggc 115072
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>dbj|AK119909.1| Oryza sativa (japonica cultivar-group) cDNA clone:002-183-A10, full
           insert sequence
          Length = 1892

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 26/28 (92%)
 Strand = Plus / Plus

                                       
Query: 185 caggagatcgccgtcgcccgcggcggca 212
           ||||||||||||| |||| |||||||||
Sbjct: 614 caggagatcgccggcgccagcggcggca 641
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>dbj|AP003845.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
              clone:OJ1699_E05
          Length = 170666

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 198    tcgcccgcggcggcacgctc 217
              ||||||||||||||||||||
Sbjct: 165738 tcgcccgcggcggcacgctc 165719
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>dbj|AP003995.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, BAC
             clone:OJ1112_F06
          Length = 104419

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 189   agatcgccgtcgcccgcggc 208
             ||||||||||||||||||||
Sbjct: 88341 agatcgccgtcgcccgcggc 88322
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>emb|AJ937741.1| Streptomyces ambofaciens ATCC 23877 right terminal inverted repeat
          Length = 243019

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 190    gatcgccgtcgcccgcggcggcacgctcgacc 221
              |||| ||||| |||| ||||||||||||||||
Sbjct: 127105 gatctccgtctcccgtggcggcacgctcgacc 127136
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>emb|AJ937740.1| Streptomyces ambofaciens ATCC 23877 left terminal inverted repeat
          Length = 273746

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 29/32 (90%)
 Strand = Plus / Plus

                                              
Query: 190    gatcgccgtcgcccgcggcggcacgctcgacc 221
              |||| ||||| |||| ||||||||||||||||
Sbjct: 127105 gatctccgtctcccgtggcggcacgctcgacc 127136
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>gb|CP000155.1| Hahella chejuensis KCTC 2396, complete genome
          Length = 7215267

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 183     cgcaggagatcgccgtcgcc 202
               ||||||||||||||||||||
Sbjct: 6813233 cgcaggagatcgccgtcgcc 6813214
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>gb|DQ289493.1| Synthetic construct EpoC (epoC) gene, complete cds
          Length = 5622

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 182  acgcaggagatcgccgtcgcccgc 205
            |||||| |||||||||||||||||
Sbjct: 5124 acgcagaagatcgccgtcgcccgc 5101
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>gb|U27486.1|SHU27486 Suid herpesvirus 1 early protein 0 EP0 mRNA, partial cds
          Length = 480

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 97  gcagagggcgacgggcgccg 116
           ||||||||||||||||||||
Sbjct: 131 gcagagggcgacgggcgccg 112
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>gb|M57505.1|SH1LLT Pseudorabies virus ORF1, ORF2, and ORF3 mRNA, complete cds
          Length = 8438

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 97  gcagagggcgacgggcgccg 116
           ||||||||||||||||||||
Sbjct: 512 gcagagggcgacgggcgccg 531
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>gb|M57504.1|SH1EPO Pseudorabies virus EPO mRNA, complete cds
          Length = 1845

 Score = 40.1 bits (20), Expect = 4.7
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 97   gcagagggcgacgggcgccg 116
            ||||||||||||||||||||
Sbjct: 1334 gcagagggcgacgggcgccg 1315


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,595,931
Number of Sequences: 3902068
Number of extensions: 1595931
Number of successful extensions: 35935
Number of sequences better than 10.0: 59
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 34942
Number of HSP's gapped (non-prelim): 993
length of query: 353
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 331
effective length of database: 17,147,199,772
effective search space: 5675723124532
effective search space used: 5675723124532
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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