ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl42a09
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 48 0.018
2dbj|AP005885.3| Oryza sativa (japonica cultivar-group) genomic D... 48 0.018
3dbj|AK111544.1| Oryza sativa (japonica cultivar-group) cDNA clon... 48 0.018
4gb|AC150871.4| Bos taurus BAC CH240-316E7 (Children's Hospital ... 42 1.1
5emb|X67250.1|RNCHIM R.norvegicus mRNA for n-chimaerin 42 1.1
6ref|NM_032083.1| Rattus norvegicus chimerin (chimaerin) 1 (Chn1)... 42 1.1
7gb|BC094519.1| Rattus norvegicus chimerin (chimaerin) 1, mRNA (c... 42 1.1
8ref|XM_579545.1| PREDICTED: Rattus norvegicus chimerin (chimaeri... 42 1.1
9gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome 42 1.1
10gb|AC027038.12| Oryza sativa chromosome 10 BAC OSJNBa0071K18 gen... 40 4.3
11gb|AC022457.8| Oryza sativa chromosome 10 BAC OSJNBa0006L06 geno... 40 4.3
12gb|AF449176.1|F449176S01 Homo sapiens ARL6IP2 gene, exon 1 40 4.3
13gb|DQ139273.1| Sus scrofa dopamine beta-hydroxylase (DBH) mRNA, ... 40 4.3
14dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.3
15ref|XM_574182.1| PREDICTED: Rattus norvegicus similar to n-chima... 40 4.3
16gb|AC016995.7| Homo sapiens BAC clone RP11-32C8 from 2, complete... 40 4.3
17gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome... 40 4.3
18dbj|AP006852.1| Candida albicans genomic DNA, chromosome 7, comp... 40 4.3 
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                        
Query: 58       cgccgtggagggttagggttttga 81
                ||||||||||||||||||||||||
Sbjct: 27513153 cgccgtggagggttagggttttga 27513130
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>dbj|AP005885.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
              clone:P0657H12
          Length = 142688

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 58     cgccgtggagggttagggttttga 81
              ||||||||||||||||||||||||
Sbjct: 104875 cgccgtggagggttagggttttga 104852
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>dbj|AK111544.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013045A10, full
           insert sequence
          Length = 3437

 Score = 48.1 bits (24), Expect = 0.018
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 58  cgccgtggagggttagggttttga 81
           ||||||||||||||||||||||||
Sbjct: 256 cgccgtggagggttagggttttga 279
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>gb|AC150871.4| Bos taurus  BAC CH240-316E7 (Children's Hospital Oakland Research
              Institute Bovine BAC Library (male)) complete sequence
          Length = 167244

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                   
Query: 26     tctccactcctcccttattct 46
              |||||||||||||||||||||
Sbjct: 112473 tctccactcctcccttattct 112453
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>emb|X67250.1|RNCHIM R.norvegicus mRNA for n-chimaerin
          Length = 2309

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 230  gatagagacggtgaaaaggcg 250
            |||||||||||||||||||||
Sbjct: 1002 gatagagacggtgaaaaggcg 1022
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>ref|NM_032083.1| Rattus norvegicus chimerin (chimaerin) 1 (Chn1), mRNA
          Length = 2309

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 230  gatagagacggtgaaaaggcg 250
            |||||||||||||||||||||
Sbjct: 1002 gatagagacggtgaaaaggcg 1022
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>gb|BC094519.1| Rattus norvegicus chimerin (chimaerin) 1, mRNA (cDNA clone MGC:105381
            IMAGE:7315609), complete cds
          Length = 2270

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 230  gatagagacggtgaaaaggcg 250
            |||||||||||||||||||||
Sbjct: 1051 gatagagacggtgaaaaggcg 1071
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>ref|XM_579545.1| PREDICTED: Rattus norvegicus chimerin (chimaerin) 1 (Chn1), mRNA
          Length = 2267

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                 
Query: 230  gatagagacggtgaaaaggcg 250
            |||||||||||||||||||||
Sbjct: 993  gatagagacggtgaaaaggcg 1013
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>gb|CP000103.1| Nitrosospira multiformis ATCC 25196, complete genome
          Length = 3184243

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 213   tcctttttgggaccgaggata 233
             |||||||||||||||||||||
Sbjct: 91849 tcctttttgggaccgaggata 91869
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>gb|AC027038.12| Oryza sativa chromosome 10 BAC OSJNBa0071K18 genomic sequence,
            complete sequence
          Length = 149758

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 62   gtggagggttagggttttga 81
            ||||||||||||||||||||
Sbjct: 2052 gtggagggttagggttttga 2071
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>gb|AC022457.8| Oryza sativa chromosome 10 BAC OSJNBa0006L06 genomic sequence,
            complete sequence
          Length = 162339

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 62   gtggagggttagggttttga 81
            ||||||||||||||||||||
Sbjct: 1907 gtggagggttagggttttga 1888
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>gb|AF449176.1|F449176S01 Homo sapiens ARL6IP2 gene, exon 1
          Length = 783

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 2   tcgctcgctcgctccggcctcgcc 25
           |||||||||||||||| |||||||
Sbjct: 238 tcgctcgctcgctccgccctcgcc 215
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>gb|DQ139273.1| Sus scrofa dopamine beta-hydroxylase (DBH) mRNA, partial cds
          Length = 1675

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 27/28 (96%), Gaps = 1/28 (3%)
 Strand = Plus / Plus

                                        
Query: 273  gtcgtgtctgctcctcccgggagacgtg 300
            |||||||||| |||||||||||||||||
Sbjct: 1267 gtcgtgtctg-tcctcccgggagacgtg 1293
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>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete
                sequence
          Length = 22685906

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 62       gtggagggttagggttttga 81
                ||||||||||||||||||||
Sbjct: 16657790 gtggagggttagggttttga 16657771
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>ref|XM_574182.1| PREDICTED: Rattus norvegicus similar to n-chimaerin (LOC498895),
           mRNA
          Length = 1426

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 230 gatagagacggtgaaaaggc 249
           ||||||||||||||||||||
Sbjct: 640 gatagagacggtgaaaaggc 659
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>gb|AC016995.7| Homo sapiens BAC clone RP11-32C8 from 2, complete sequence
          Length = 153137

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 2     tcgctcgctcgctccggcctcgcc 25
             |||||||||||||||| |||||||
Sbjct: 36789 tcgctcgctcgctccgccctcgcc 36766
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>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence
          Length = 22698374

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                    
Query: 62       gtggagggttagggttttga 81
                ||||||||||||||||||||
Sbjct: 16666431 gtggagggttagggttttga 16666412
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>dbj|AP006852.1| Candida albicans genomic DNA, chromosome 7, complete sequence
          Length = 949626

 Score = 40.1 bits (20), Expect = 4.3
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 92     ctcgtggtagtagaaagagg 111
              ||||||||||||||||||||
Sbjct: 389539 ctcgtggtagtagaaagagg 389520


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 1,835,794
Number of Sequences: 3902068
Number of extensions: 1835794
Number of successful extensions: 38164
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 38029
Number of HSP's gapped (non-prelim): 136
length of query: 327
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 305
effective length of database: 17,147,199,772
effective search space: 5229895930460
effective search space used: 5229895930460
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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