Clone Information

BLAST Search Result

Clone Name	bastl42a07
Clone Library Name	barley_pub

No.	Definition	Score (bits)	E Value
1	CABP4_HUMAN (P57796) Calcium-binding protein 4 (CaBP4)	35	0.048
2	COBS_RHILO (Q98KP0) Cobalamin synthase (EC 2.-.-.-)	33	0.24
3	RAI1_MOUSE (Q61818) Retinoic acid-induced protein 1	33	0.24
4	TRI1_STRCO (Q9RDE2) Tricorn protease homolog 1 (EC 3.4.21.-)	32	0.40
5	ENL_HUMAN (Q03111) Protein ENL	32	0.53
6	Y3055_STRAW (Q82IS8) UPF0182 protein SAV3055	31	0.69
7	SPEG_RAT (Q63638) Striated muscle-specific serine/threonine prot...	31	0.90
8	Y737_DROME (P83475) Hypothetical protein CG31737 in chromosome 2	31	0.90
9	IF2_CAUCR (Q9AC25) Translation initiation factor IF-2	31	0.90
10	RAI1_HUMAN (Q7Z5J4) Retinoic acid-induced protein 1	30	1.2
11	TTBK1_HUMAN (Q5TCY1) Tau-tubulin kinase 1 (EC 2.7.11.1) (Brain-d...	30	1.2
12	GPS2_HUMAN (Q13227) G protein pathway suppressor 2 (GPS2 protein)	30	1.5
13	CUTL1_HUMAN (P39880) Homeobox protein cut-like 1 (CCAAT displace...	30	2.0
14	RHG09_HUMAN (Q9BRR9) Rho-GTPase-activating protein 9	30	2.0
15	CHEB1_CAUCR (O87717) Chemotaxis response regulator protein-gluta...	29	2.6
16	BRWD1_HUMAN (Q9NSI6) Bromodomain and WD-repeat domain-containing...	29	2.6
17	ICP4_HHV11 (P08392) Trans-acting transcriptional protein ICP4 (T...	29	2.6
18	TGM1_HUMAN (P22735) Protein-glutamine gamma-glutamyltransferase ...	29	2.6
19	B3A3_RABIT (O18917) Anion exchange protein 3 (Neuronal band 3-li...	29	2.6
20	CAC1D_CHICK (O73700) Voltage-dependent L-type calcium channel al...	29	3.4
21	IF2_CHRVO (Q7NY13) Translation initiation factor IF-2	29	3.4
22	RPB1_ARATH (P18616) DNA-directed RNA polymerase II largest subun...	28	4.5
23	NRAM1_SHEEP (P49280) Natural resistance-associated macrophage pr...	28	4.5
24	SPEG_MOUSE (Q62407) Striated muscle-specific serine/threonine pr...	28	4.5
25	IF2_BRAJA (Q89WA9) Translation initiation factor IF-2	28	4.5
26	TR2M_AGRRH (Q09109) Tryptophan 2-monooxygenase (EC 1.13.12.3)	28	5.8
27	SPAG4_MOUSE (Q9JJF2) Sperm-associated antigen 4 protein (Outer d...	28	5.8
28	PHLPP_MOUSE (Q8CHE4) PH domain leucine-rich repeat-containing pr...	28	5.8
29	HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hn...	28	5.8
30	NRAM1_BOVIN (Q27981) Natural resistance-associated macrophage pr...	28	5.8
31	NRAM1_BISBI (Q95102) Natural resistance-associated macrophage pr...	28	5.8
32	CJ078_MOUSE (Q8BP27) Protein C10orf78 homolog	28	5.8
33	HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (...	28	5.8
34	HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (...	28	5.8
35	HMEN_ARTSF (Q05640) Homeobox protein engrailed	28	5.8
36	PHLPP_HUMAN (O60346) PH domain leucine-rich repeat-containing pr...	28	5.8
37	EXO84_YARLI (Q6C238) Exocyst complex component EXO84	28	5.8
38	MAP4_BOVIN (P36225) Microtubule-associated protein 4 (MAP 4) (Mi...	28	7.6
39	FCRL_HUMAN (Q7L513) Fc receptor-like and mucin-like 1 precursor ...	28	7.6
40	FABD_HUMAN (Q8IVS2) Malonyl CoA-acyl carrier protein transacylas...	28	7.6
41	PLCL4_HUMAN (O75038) 1-phosphatidylinositol-4,5-bisphosphate pho...	28	7.6
42	CYTSA_MOUSE (Q2KN98) Cytospin-A	28	7.6
43	NCAP_INBLE (P04665) Nucleoprotein	28	7.6
44	SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attach...	27	9.9
45	CSMD1_HUMAN (Q96PZ7) CUB and sushi domain-containing protein 1 p...	27	9.9
46	WASIP_MOUSE (Q8K1I7) Wiskott-Aldrich syndrome protein-interactin...	27	9.9
47	PSI1_SCHPO (Q09912) Protein psi1 (Protein psi)	27	9.9
48	UCRIA_ORYSA (Q69S39) Cytochrome b6-f complex iron-sulfur subunit...	27	9.9
49	SHAN3_RAT (Q9JLU4) SH3 and multiple ankyrin repeat domains 3 (Sh...	27	9.9
50	B2L12_HUMAN (Q9HB09) Bcl-2-related proline-rich protein (Bcl-2-l...	27	9.9
51	GCH1_HUMAN (P30793) GTP cyclohydrolase I (EC 3.5.4.16) (GTP-CH-I)	27	9.9
52	CSMD1_MOUSE (Q923L3) CUB and sushi domain-containing protein 1 p...	27	9.9
53	IKKB_HUMAN (O14920) Inhibitor of nuclear factor kappa B kinase b...	27	9.9

>CABP4_HUMAN (P57796) Calcium-binding protein 4 (CaBP4)|
          Length = 275

 Score = 35.0 bits (79), Expect = 0.048
 Identities = 20/50 (40%), Positives = 22/50 (44%)
 Frame = -1

Query: 220 RRTGSPERATGSSAAPPGLNPTRPGTAPFSDRIPSPDAKSSRGKKRNRPD 71
           +RTGS    TG  A     NP   G  P      SP   SSR   R+RPD
Sbjct: 53  KRTGSSGEQTGPEAPGSSNNPPSTGEGPAGAPPASPGPASSRQSHRHRPD 102

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>COBS_RHILO (Q98KP0) Cobalamin synthase (EC 2.-.-.-)|
          Length = 259

 Score = 32.7 bits (73), Expect = 0.24
 Identities = 16/34 (47%), Positives = 19/34 (55%)
 Frame = +2

Query: 20  LAAASWVEPAPGILPPKIGTISLFSAARFGVGRG 121
           LAAA W  P  G+L   IG I   +A RFG+  G
Sbjct: 39  LAAAIWAAPVAGLLVGLIGAIVFATAERFGLAMG 72

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>RAI1_MOUSE (Q61818) Retinoic acid-induced protein 1|
          Length = 1889

 Score = 32.7 bits (73), Expect = 0.24
 Identities = 16/53 (30%), Positives = 23/53 (43%)
 Frame = -1

Query: 223  GRRTGSPERATGSSAAPPGLNPTRPGTAPFSDRIPSPDAKSSRGKKRNRPDLR 65
            G+R G P     SS + P   P    ++P   +   PD+ S  GK +    LR
Sbjct: 1078 GKRVGKPSPKAASSPSNPAALPVASDSSPMGSKTKEPDSPSMPGKDQRSMVLR 1130

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>TRI1_STRCO (Q9RDE2) Tricorn protease homolog 1 (EC 3.4.21.-)|
          Length = 1067

 Score = 32.0 bits (71), Expect = 0.40
 Identities = 20/40 (50%), Positives = 23/40 (57%), Gaps = 3/40 (7%)
 Frame = -3

Query: 287 TARGSGAAYRRGSVEWKYRGAGPANGLA---GARDRLLRS 177
           TARGS  A R G V W    +GPA  LA   G R+RL R+
Sbjct: 300 TARGSAVAVR-GGVHWVTHRSGPARALAATPGVRNRLPRT 338

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>ENL_HUMAN (Q03111) Protein ENL|
          Length = 559

 Score = 31.6 bits (70), Expect = 0.53
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -1

Query: 184 SAAPPGLNPTRPGTAPFSDRIPSPDAKSSRGKK 86
           S + PG +P    ++ FSD+ P+ D  S+RG+K
Sbjct: 308 SRSAPGTSPRTSSSSSFSDKKPAKDKSSTRGEK 340

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>Y3055_STRAW (Q82IS8) UPF0182 protein SAV3055|
          Length = 998

 Score = 31.2 bits (69), Expect = 0.69
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = -1

Query: 223  GRRTGSPERATGSSAAPPGLNPTRPGTAPFSDRIPSPD 110
            G ++G   + +G +++P G   + P ++P SD+ PS D
Sbjct: 955  GSKSGDSGKGSGPTSSPSGSASSSPSSSPSSDKSPSSD 992

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>SPEG_RAT (Q63638) Striated muscle-specific serine/threonine protein kinase (EC|
            2.7.11.1) (Aortic preferentially expressed protein 1)
            (APEG-1)
          Length = 3259

 Score = 30.8 bits (68), Expect = 0.90
 Identities = 18/51 (35%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
 Frame = -1

Query: 211  GSPER--ATGSSAAPPGLNPTRPGTAPFSDRIPSPDAKSSRGKKRNRPDLR 65
            G+PE   AT       G  P++   AP  + +PSP  +S  G    RP+LR
Sbjct: 1966 GTPEAGAATPMDWQEQGRAPSKDQEAPSPEALPSPGQESPDGPSPRRPELR 2016

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>Y737_DROME (P83475) Hypothetical protein CG31737 in chromosome 2|
          Length = 263

 Score = 30.8 bits (68), Expect = 0.90
 Identities = 12/26 (46%), Positives = 15/26 (57%)
 Frame = +1

Query: 214 FAGPAPRYFHSTLPRRYAAPEPRAVP 291
           + GP PR +    PRRY+ P PR  P
Sbjct: 194 YPGPGPRGYPGQGPRRYSCPGPRGYP 219



 Score = 27.3 bits (59), Expect = 9.9
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +1

Query: 214 FAGPAPRYFHSTLPRRYAAPEPRAVP 291
           + GP PR +    PR Y  P PR  P
Sbjct: 178 YPGPGPRGYPGRGPRGYPGPGPRGYP 203

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>IF2_CAUCR (Q9AC25) Translation initiation factor IF-2|
          Length = 1009

 Score = 30.8 bits (68), Expect = 0.90
 Identities = 12/30 (40%), Positives = 18/30 (60%)
 Frame = -1

Query: 160 PTRPGTAPFSDRIPSPDAKSSRGKKRNRPD 71
           P   G  PF+ R P PDA ++ G++  RP+
Sbjct: 225 PAPQGDRPFNQRAPRPDANANFGQRAPRPE 254

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>RAI1_HUMAN (Q7Z5J4) Retinoic acid-induced protein 1|
          Length = 1906

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 15/53 (28%), Positives = 23/53 (43%)
 Frame = -1

Query: 223  GRRTGSPERATGSSAAPPGLNPTRPGTAPFSDRIPSPDAKSSRGKKRNRPDLR 65
            G+R G P     SS + P   P    ++P   +    D+ S+ GK +    LR
Sbjct: 1095 GKRVGKPSPKAASSPSNPAALPVASDSSPMGSKTKETDSPSTPGKDQRSMILR 1147

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>TTBK1_HUMAN (Q5TCY1) Tau-tubulin kinase 1 (EC 2.7.11.1) (Brain-derived tau|
            kinase)
          Length = 1321

 Score = 30.4 bits (67), Expect = 1.2
 Identities = 28/71 (39%), Positives = 33/71 (46%), Gaps = 2/71 (2%)
 Frame = -3

Query: 311  LSVRRESGTARGSGAAYRRGSVEWKYRGAGPANGLAGARDRLLRS-ATRAKPDAARN-SP 138
            ++ R +  T  GS  A      +   RG GP    AGAR    RS    A   AARN S 
Sbjct: 1188 ITSRLQLQTPPGSATAADLRPKQPPGRGLGPGRAQAGARPPAPRSPRLPASTSAARNASA 1247

Query: 137  IFRSNSLSRRQ 105
              RS SLSRR+
Sbjct: 1248 SPRSQSLSRRE 1258

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>GPS2_HUMAN (Q13227) G protein pathway suppressor 2 (GPS2 protein)|
          Length = 327

 Score = 30.0 bits (66), Expect = 1.5
 Identities = 15/39 (38%), Positives = 23/39 (58%)
 Frame = -1

Query: 223 GRRTGSPERATGSSAAPPGLNPTRPGTAPFSDRIPSPDA 107
           G+  GSP  A G++  PP   PT+P  +P S ++ +P A
Sbjct: 178 GQFQGSPGGAYGTAQPPPHYGPTQPAYSP-SQQLRAPSA 215

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>CUTL1_HUMAN (P39880) Homeobox protein cut-like 1 (CCAAT displacement protein)|
            (CDP)
          Length = 1505

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 17/45 (37%), Positives = 21/45 (46%)
 Frame = -1

Query: 208  SPERATGSSAAPPGLNPTRPGTAPFSDRIPSPDAKSSRGKKRNRP 74
            +PE A  S+AA PG  P  P +AP       P + SS      RP
Sbjct: 1416 APEDAATSAAAAPGEGPAAPSSAP-------PPSNSSSSSAPRRP 1453

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>RHG09_HUMAN (Q9BRR9) Rho-GTPase-activating protein 9|
          Length = 750

 Score = 29.6 bits (65), Expect = 2.0
 Identities = 17/51 (33%), Positives = 25/51 (49%)
 Frame = -3

Query: 311 LSVRRESGTARGSGAAYRRGSVEWKYRGAGPANGLAGARDRLLRSATRAKP 159
           +  RRE+ T R  G+  R   +E +  G+GPA  L+   D    S   +KP
Sbjct: 441 VEARREAPTGRDQGSGDRENPLELRLSGSGPAE-LSAGEDEEEESELVSKP 490

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>CHEB1_CAUCR (O87717) Chemotaxis response regulator protein-glutamate|
           methylesterase of group 1 operon (EC 3.1.1.61)
          Length = 344

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 18/42 (42%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
 Frame = +3

Query: 87  FFPRLDLASGEGIR-SENGAV--PGRVGFSPGGAAEEPVARS 203
           F  RLD +SG  ++ + +GA+  PG+V  +PGGA    V RS
Sbjct: 198 FAARLDRSSGAKVQEASDGALLEPGKVYVAPGGATHLEVVRS 239

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>BRWD1_HUMAN (Q9NSI6) Bromodomain and WD-repeat domain-containing protein 1|
            (WD-repeat protein 9)
          Length = 2320

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 18/47 (38%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
 Frame = -1

Query: 211  GSPERATGSSAAPPGLNPTRPG-TAPFSDRIPSPDAKSSRGKKRNRP 74
            GSP ++T S  A  G + T  G ++  +    S  A+SS  +KRNRP
Sbjct: 1474 GSPTQSTSSRTAYLGTHKTSAGISSGVTSGDSSDSAESSERRKRNRP 1520

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>ICP4_HHV11 (P08392) Trans-acting transcriptional protein ICP4 (Transcriptional|
           activator IE175) (Alpha-4 protein)
          Length = 1298

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 18/36 (50%), Positives = 19/36 (52%), Gaps = 5/36 (13%)
 Frame = -1

Query: 199 RATG---SSAAP--PGLNPTRPGTAPFSDRIPSPDA 107
           RA G   SSAAP  PG  P  PG  P S+  P P A
Sbjct: 218 RAVGRGPSSAAPAAPGRTPPPPGPPPLSEAAPKPRA 253

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>TGM1_HUMAN (P22735) Protein-glutamine gamma-glutamyltransferase K (EC|
           2.3.2.13) (Transglutaminase K) (TGase K) (TGK) (TG(K))
           (Transglutaminase-1) (Epidermal TGase)
          Length = 817

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -1

Query: 169 GLNPTRPGTAPFSDRIPSPDAKSSRGKKRN 80
           G NP +P T P  +  P PD +S RG  R+
Sbjct: 13  GGNPLQPPTTPSPEPEPEPDGRSRRGGGRS 42

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>B3A3_RABIT (O18917) Anion exchange protein 3 (Neuronal band 3-like protein)|
           (Solute carrier family 4 member 3) (Anion exchanger 3
           brain isoform)
          Length = 1233

 Score = 29.3 bits (64), Expect = 2.6
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = -1

Query: 214 TGSPERATGSSAAPPGLNPTRPGTAPFSDRIPSPDAKSSRGKKRN 80
           +GSP++A  S  +    +P  PG A F+  +PS   +S +  +R+
Sbjct: 159 SGSPQKAKFSIGSDEDDSPGLPGKAAFTKPLPSVGPRSDKSPQRS 203

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>CAC1D_CHICK (O73700) Voltage-dependent L-type calcium channel alpha-1D subunit|
            (Voltage-gated calcium channel alpha subunit Cav1.3)
            (CHCACHA1D)
          Length = 2190

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 17/53 (32%), Positives = 26/53 (49%)
 Frame = -1

Query: 208  SPERATGSSAAPPGLNPTRPGTAPFSDRIPSPDAKSSRGKKRNRPDLRWKNAW 50
            SP R+T S A PP   P R  T  ++  I    A+S+     + P L  +++W
Sbjct: 2002 SPSRSTRSWATPPATPPNRDHTPYYTPLIQVDRAESTEHMNGSLPSLH-RSSW 2053

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>IF2_CHRVO (Q7NY13) Translation initiation factor IF-2|
          Length = 964

 Score = 28.9 bits (63), Expect = 3.4
 Identities = 21/60 (35%), Positives = 22/60 (36%), Gaps = 6/60 (10%)
 Frame = -2

Query: 171 PG*TRRGPEQPHFQIEFPLPTPNLAAEKREIVPIFGGRMPGAG------STHDAAARGRG 10
           PG   RGP         P P P  AA  +   P  GG  PG G      S  D    GRG
Sbjct: 284 PGGDNRGPRPAGAGDRGPRPAPAAAAPSQPPAPAPGGSRPGKGKKGGERSWDDNKKGGRG 343

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>RPB1_ARATH (P18616) DNA-directed RNA polymerase II largest subunit (EC 2.7.7.6)|
          Length = 1840

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 208  SPERATGSSAAPPGLNPTRPGTAPFS 131
            SP  + G S + PG +PT PG +P S
Sbjct: 1538 SPSSSPGYSPSSPGYSPTSPGYSPTS 1563

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>NRAM1_SHEEP (P49280) Natural resistance-associated macrophage protein 1 (NRAMP|
           1)
          Length = 548

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
 Frame = -1

Query: 214 TGSPERAT---GSSAAPPGLNPTR--PGTAPFSDRIPSPDAKS 101
           TG+P +     GS ++PP   P +  PG    S++IP PD +S
Sbjct: 5   TGTPNQGGTRYGSISSPPSPGPQQAPPGGTYLSEKIPIPDTES 47

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>SPEG_MOUSE (Q62407) Striated muscle-specific serine/threonine protein kinase (EC|
            2.7.11.1) (Aortic preferentially expressed protein 1)
            (APEG-1)
          Length = 3262

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 17/51 (33%), Positives = 24/51 (47%), Gaps = 2/51 (3%)
 Frame = -1

Query: 211  GSPER--ATGSSAAPPGLNPTRPGTAPFSDRIPSPDAKSSRGKKRNRPDLR 65
            G+PE   AT          P++   AP  + +PSP  +S  G    RP+LR
Sbjct: 1966 GTPEAGAATPMDWQEQERTPSKDQEAPSPEALPSPGQESPDGPSPRRPELR 2016

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>IF2_BRAJA (Q89WA9) Translation initiation factor IF-2|
          Length = 902

 Score = 28.5 bits (62), Expect = 4.5
 Identities = 16/42 (38%), Positives = 20/42 (47%), Gaps = 3/42 (7%)
 Frame = -1

Query: 208 SPERATGSSAAPPGLNPTRPGTA---PFSDRIPSPDAKSSRG 92
           +P    G+ AA PG   TRPGT    P +     P A + RG
Sbjct: 191 APAPRPGAPAARPGTTTTRPGTTTARPATTTAQRPGAPAGRG 232

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>TR2M_AGRRH (Q09109) Tryptophan 2-monooxygenase (EC 1.13.12.3)|
          Length = 749

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 15/39 (38%), Positives = 20/39 (51%)
 Frame = +3

Query: 90  FPRLDLASGEGIRSENGAVPGRVGFSPGGAAEEPVARSG 206
           FP +DL    G   E+ A  GR+G+ P G  +  VA  G
Sbjct: 190 FPTVDLLYDYGKFFESCAADGRIGYFPEGVTKPKVAIIG 228

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>SPAG4_MOUSE (Q9JJF2) Sperm-associated antigen 4 protein (Outer dense|
           fiber-associated protein SPAG4)
          Length = 443

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 15/33 (45%), Positives = 17/33 (51%), Gaps = 7/33 (21%)
 Frame = -1

Query: 223 GRRTGSPE-------RATGSSAAPPGLNPTRPG 146
           GRR+  PE       RA GSS   P L+P  PG
Sbjct: 38  GRRSAGPELGEPEGRRARGSSCGEPALSPGMPG 70

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>PHLPP_MOUSE (Q8CHE4) PH domain leucine-rich repeat-containing protein|
           phosphatase (EC 3.1.3.16) (PH domain leucine-rich repeat
           protein phosphatase) (Pleckstrin homology
           domain-containing family E protein 1) (Suprachiasmatic
           nucleus circadian oscillatory
          Length = 1687

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 21/64 (32%), Positives = 31/64 (48%), Gaps = 7/64 (10%)
 Frame = -3

Query: 290 GTARGSGAAYRRGSVEWKYRGAGP-------ANGLAGARDRLLRSATRAKPDAARNSPIF 132
           G A G+G   RRG+ +    GA P       AN L   R RL R+ + A   ++ +SP  
Sbjct: 65  GRAGGTGRRRRRGAPQPAAGGAAPVPAAGGGANSLLLKRGRLKRNLSAAAAASSSSSPSS 124

Query: 131 RSNS 120
            S++
Sbjct: 125 ASSA 128

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>HNRPQ_RAT (Q7TP47) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)|
           (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic
           RNA-interacting protein) (Liver regeneration-related
           protein LRRG077)
          Length = 533

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 299 RESGTARGSGAAYRRGSVEWKYRGA-GPANGLAGAR 195
           R +  +RG GAA  RG   +  RG  G A G+ GAR
Sbjct: 414 RGAAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGAR 449



 Score = 27.3 bits (59), Expect = 9.9
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -3

Query: 284 ARGSGAAYRRGSVEWKYRGAGPANGLAGARDR 189
           ARG G    RG+   + RGA P  G AG   R
Sbjct: 405 ARGRGGRGARGAAPSRGRGAAPPRGRAGYSQR 436

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>NRAM1_BOVIN (Q27981) Natural resistance-associated macrophage protein 1 (NRAMP|
           1)
          Length = 548

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
 Frame = -1

Query: 214 TGSPERAT---GSSAAPPGLNPTR--PGTAPFSDRIPSPDAKS 101
           TG P++     GS ++PP   P +  PG    S++IP PD +S
Sbjct: 5   TGPPKQGGTRYGSISSPPSPEPQQAPPGGTYLSEKIPIPDTES 47

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>NRAM1_BISBI (Q95102) Natural resistance-associated macrophage protein 1 (NRAMP|
           1)
          Length = 548

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 5/43 (11%)
 Frame = -1

Query: 214 TGSPERAT---GSSAAPPGLNPTR--PGTAPFSDRIPSPDAKS 101
           TG P++     GS ++PP   P +  PG    S++IP PD +S
Sbjct: 5   TGPPKQGGTRYGSISSPPSPEPQQAPPGGTYLSEKIPIPDTES 47

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>CJ078_MOUSE (Q8BP27) Protein C10orf78 homolog|
          Length = 319

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 23/66 (34%), Positives = 29/66 (43%), Gaps = 6/66 (9%)
 Frame = -1

Query: 217 RTGSPERATGSSAAPPGLNPTRPGTAPFS----DRIPSPDAKSSRGKK--RNRPDLRWKN 56
           R   P   T  +A  P  NP  P T+P +    +  PSP + SS GK+     P  R K 
Sbjct: 78  RENPPSPPTSPAAPQPRENPPSPPTSPAAPQPRENPPSPHSNSS-GKQPLSGTPKERLKK 136

Query: 55  AWSGFH 38
           A S  H
Sbjct: 137 ARSSSH 142

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>HNRPQ_MOUSE (Q7TMK9) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)|
           (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic
           RNA-interacting protein) (Glycine-and tyrosine-rich
           RNA-binding protein) (GRY-RBP) (NS1-associated protein
           1) (pp68)
          Length = 623

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 299 RESGTARGSGAAYRRGSVEWKYRGA-GPANGLAGAR 195
           R +  +RG GAA  RG   +  RG  G A G+ GAR
Sbjct: 504 RGAAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGAR 539



 Score = 27.3 bits (59), Expect = 9.9
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -3

Query: 284 ARGSGAAYRRGSVEWKYRGAGPANGLAGARDR 189
           ARG G    RG+   + RGA P  G AG   R
Sbjct: 495 ARGRGGRGARGAAPSRGRGAAPPRGRAGYSQR 526

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>HNRPQ_HUMAN (O60506) Heterogeneous nuclear ribonucleoprotein Q (hnRNP Q)|
           (hnRNP-Q) (Synaptotagmin-binding, cytoplasmic
           RNA-interacting protein) (Glycine-and tyrosine-rich
           RNA-binding protein) (GRY-RBP) (NS1-associated protein
           1)
          Length = 623

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 16/36 (44%), Positives = 20/36 (55%), Gaps = 1/36 (2%)
 Frame = -3

Query: 299 RESGTARGSGAAYRRGSVEWKYRGA-GPANGLAGAR 195
           R +  +RG GAA  RG   +  RG  G A G+ GAR
Sbjct: 504 RGAAPSRGRGAAPPRGRAGYSQRGGPGSARGVRGAR 539



 Score = 27.3 bits (59), Expect = 9.9
 Identities = 14/32 (43%), Positives = 16/32 (50%)
 Frame = -3

Query: 284 ARGSGAAYRRGSVEWKYRGAGPANGLAGARDR 189
           ARG G    RG+   + RGA P  G AG   R
Sbjct: 495 ARGRGGRGARGAAPSRGRGAAPPRGRAGYSQR 526

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>HMEN_ARTSF (Q05640) Homeobox protein engrailed|
          Length = 349

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 12/24 (50%), Positives = 16/24 (66%)
 Frame = -1

Query: 184 SAAPPGLNPTRPGTAPFSDRIPSP 113
           SA+ PG +P RPG+A  S  + SP
Sbjct: 32  SASTPGPSPDRPGSATMSSPLSSP 55

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>PHLPP_HUMAN (O60346) PH domain leucine-rich repeat-containing protein|
           phosphatase (EC 3.1.3.16) (PH domain leucine-rich repeat
           protein phosphatase) (Pleckstrin homology
           domain-containing family E protein 1) (Suprachiasmatic
           nucleus circadian oscillatory
          Length = 1717

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 19/59 (32%), Positives = 27/59 (45%)
 Frame = -3

Query: 290 GTARGSGAAYRRGSVEWKYRGAGPANGLAGARDRLLRSATRAKPDAARNSPIFRSNSLS 114
           G A G+G   RRG+ +    GA P  G  G  + LL    R K + +  +    S+S S
Sbjct: 85  GRAGGAGRRRRRGAPQPIAGGAAPVPGAGGGANSLLLRRGRLKRNLSAAAAAASSSSSS 143

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>EXO84_YARLI (Q6C238) Exocyst complex component EXO84|
          Length = 657

 Score = 28.1 bits (61), Expect = 5.8
 Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 5/47 (10%)
 Frame = -2

Query: 147 EQPHFQIEFPLPTPNLAAEKREIVPI-----FGGRMPGAGSTHDAAA 22
           ++P+ Q    L  PN+  + RE V       F  R+PG G  +DAAA
Sbjct: 29  QKPYIQDSTHLQLPNVGDKDRERVGNMVKRRFSARIPGQGVPYDAAA 75

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>MAP4_BOVIN (P36225) Microtubule-associated protein 4 (MAP 4)|
           (Microtubule-associated protein-U) (MAP-U)
          Length = 1072

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
 Frame = -1

Query: 196 ATGSSAAPPGLNP----TRPGTAPFSDRIPSPDAKSSRGKKRNRP 74
           A+GS  A P   P    +RP T P  D  P P A++   +KR  P
Sbjct: 691 ASGSVPAAPPKRPAAATSRPSTLPSKDTKPKPVAEAKIPEKRVSP 735

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>FCRL_HUMAN (Q7L513) Fc receptor-like and mucin-like 1 precursor (Fc receptor|
           homolog expressed in B-cells) (Fc receptor related
           protein X) (FcRX) (Fc receptor-like protein)
          Length = 359

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 16/34 (47%), Positives = 18/34 (52%), Gaps = 5/34 (14%)
 Frame = -1

Query: 199 RATGSSAAPPGLNP-----TRPGTAPFSDRIPSP 113
           +   SSAAPP LNP       PGTAP  +  P P
Sbjct: 261 QGASSSAAPPTLNPAPQKSAAPGTAP--EEAPGP 292

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>FABD_HUMAN (Q8IVS2) Malonyl CoA-acyl carrier protein transacylase,|
           mitochondrial precursor (EC 2.3.1.39) (MCT)
           (Mitochondrial malonyltransferase)
          Length = 390

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 19/43 (44%), Positives = 25/43 (58%)
 Frame = -3

Query: 281 RGSGAAYRRGSVEWKYRGAGPANGLAGARDRLLRSATRAKPDA 153
           RG GA+YRRG+  +     G A G+A     LLR AT A+ +A
Sbjct: 12  RGLGASYRRGASSFPVPPPG-AQGVA----ELLRDATGAEEEA 49

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>PLCL4_HUMAN (O75038) 1-phosphatidylinositol-4,5-bisphosphate|
            phosphodiesterase-like 4 (EC 3.1.4.11) (Phosphoinositide
            phospholipase C-like 4) (Phospholipase C-like 4)
            (Fragment)
          Length = 1182

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 18/48 (37%), Positives = 21/48 (43%), Gaps = 5/48 (10%)
 Frame = -1

Query: 217  RTGSPE-----RATGSSAAPPGLNPTRPGTAPFSDRIPSPDAKSSRGK 89
            R G PE     R TGS      + P  PG AP +     P + S RGK
Sbjct: 967  RRGFPELVLGTRDTGSKGVADDVVPPGPGPAPEAPAQEGPGSGSPRGK 1014

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>CYTSA_MOUSE (Q2KN98) Cytospin-A|
          Length = 1118

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 13/36 (36%), Positives = 18/36 (50%)
 Frame = -1

Query: 217 RTGSPERATGSSAAPPGLNPTRPGTAPFSDRIPSPD 110
           +T    +   SS+AP G+ P RPG A    +  S D
Sbjct: 21  QTVEKSKPENSSSAPTGVKPVRPGAAAALSKTKSND 56

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>NCAP_INBLE (P04665) Nucleoprotein|
          Length = 560

 Score = 27.7 bits (60), Expect = 7.6
 Identities = 15/45 (33%), Positives = 24/45 (53%)
 Frame = +3

Query: 87  FFPRLDLASGEGIRSENGAVPGRVGFSPGGAAEEPVARSGEPVRR 221
           F+  +  + G  +  E G+  G++  SP  A E P+A S + VRR
Sbjct: 441 FWAPMTRSGGNEVSGEGGS--GQISCSPVFAVERPIALSKQAVRR 483

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>SAFB1_RAT (O88453) Scaffold attachment factor B (Scaffold attachment factor|
           B1) (SAF-B)
          Length = 931

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 13/32 (40%), Positives = 16/32 (50%)
 Frame = +3

Query: 111 SGEGIRSENGAVPGRVGFSPGGAAEEPVARSG 206
           SG G     G + GR  F+PGGA+   V   G
Sbjct: 884 SGPGHMMNRGGMSGRGSFAPGGASRRHVIPRG 915

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>CSMD1_HUMAN (Q96PZ7) CUB and sushi domain-containing protein 1 precursor (CUB and|
            sushi multiple domains protein 1)
          Length = 3565

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 90   FPRLDLASGEGIRSENGAVPGRVGFSPGGAAEEPVAR 200
            FPR D   G  + S+NG +     +SPG   E P+ +
Sbjct: 2140 FPRCDAPCGYNVTSQNGTI-----YSPGFPDEYPILK 2171

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>WASIP_MOUSE (Q8K1I7) Wiskott-Aldrich syndrome protein-interacting protein|
           (WASP-interacting protein)
          Length = 493

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 14/34 (41%), Positives = 17/34 (50%), Gaps = 4/34 (11%)
 Frame = -1

Query: 208 SPERATGSSAAPPGLNPTRPGTAPF----SDRIP 119
           +P    GS A PP   P+RPG  P     +D IP
Sbjct: 289 TPRPGLGSQAPPPPPPPSRPGPPPLPPASNDEIP 322

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>PSI1_SCHPO (Q09912) Protein psi1 (Protein psi)|
          Length = 379

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +3

Query: 99  LDLASGEGIRSENGAVPGRVGFSPGGAAEEPVARSGEP 212
           +D+  G G R+  G +PG      GG    P AR   P
Sbjct: 153 MDMDGGFGTRTRGGGMPGGFANMFGGGGAGPHARRSHP 190

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>UCRIA_ORYSA (Q69S39) Cytochrome b6-f complex iron-sulfur subunit, chloroplast|
           precursor (EC 1.10.99.1) (Rieske iron-sulfur protein)
           (Plastohydroquinone:plastocyanin oxidoreductase
           iron-sulfur protein) (ISP) (RISP)
          Length = 225

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 14/40 (35%), Positives = 21/40 (52%)
 Frame = -3

Query: 221 PANGLAGARDRLLRSATRAKPDAARNSPIFRSNSLSRRQI 102
           P  GL   R+R+ R+AT     AA + P  R   + +RQ+
Sbjct: 25  PVKGLGFGRERVPRTATTITCQAASSIPADRVPDMGKRQL 64

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>SHAN3_RAT (Q9JLU4) SH3 and multiple ankyrin repeat domains 3 (Shank3)|
           (Proline-rich synapse associated protein 2) (ProSAP2)
           (SPANK-2)
          Length = 1815

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 13/48 (27%), Positives = 20/48 (41%)
 Frame = -2

Query: 153 GPEQPHFQIEFPLPTPNLAAEKREIVPIFGGRMPGAGSTHDAAARGRG 10
           GPE+    +   +P      E  ++  +  GR P + S  D    GRG
Sbjct: 839 GPEKLPGSLRKGIPRTKSVGEDEKLASLLEGRFPRSTSMQDTVREGRG 886

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>B2L12_HUMAN (Q9HB09) Bcl-2-related proline-rich protein (Bcl-2-like 12 protein)|
          Length = 334

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
 Frame = -3

Query: 263 YRRGSVEWKYR--GAGPANGLAGARDRLLRSAT 171
           +RR  VEW+ R  G GP   +AG+ +  LR  T
Sbjct: 65  WRRPQVEWRRRRWGPGPGASMAGSEELGLREDT 97

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>GCH1_HUMAN (P30793) GTP cyclohydrolase I (EC 3.5.4.16) (GTP-CH-I)|
          Length = 250

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
 Frame = -1

Query: 220 RRTGSPERATGSSAAPPGLNPTRPGTAPFSDRIPSPDAKSSR---GKKRNRP 74
           R      R    S   P  +P RPG +  +++ P P+AKS++   G K  RP
Sbjct: 7   RAPAEKPRGARCSNGFPERDPPRPGPSRPAEKPPRPEAKSAQPADGWKGERP 58

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>CSMD1_MOUSE (Q923L3) CUB and sushi domain-containing protein 1 precursor (CUB and|
            sushi multiple domains protein 1)
          Length = 3564

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 13/37 (35%), Positives = 19/37 (51%)
 Frame = +3

Query: 90   FPRLDLASGEGIRSENGAVPGRVGFSPGGAAEEPVAR 200
            FPR D   G  + S+NG +     +SPG   E P+ +
Sbjct: 2139 FPRCDAPCGYNVTSQNGTI-----YSPGFPDEYPILK 2170

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>IKKB_HUMAN (O14920) Inhibitor of nuclear factor kappa B kinase beta subunit|
           (EC 2.7.11.10) (I-kappa-B-kinase beta) (IkBKB)
           (IKK-beta) (IKK-B) (I-kappa-B kinase 2) (IKK2) (Nuclear
           factor NF-kappa-B inhibitor kinase beta) (NFKBIKB)
          Length = 756

 Score = 27.3 bits (59), Expect = 9.9
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -1

Query: 226 QGRRTGSPERATGSSAAPPGLNPTRPGTAPFSDRIPSPDAKS 101
           +G  +GSP+    S  + PG   ++P TA  S+ +P P  KS
Sbjct: 666 RGPVSGSPDSMNASRLSQPGQLMSQPSTA--SNSLPEPAKKS 705


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 43,739,168
Number of Sequences: 219361
Number of extensions: 883060
Number of successful extensions: 4652
Number of sequences better than 10.0: 53
Number of HSP's better than 10.0 without gapping: 4095
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4637
length of database: 80,573,946
effective HSP length: 80
effective length of database: 63,025,066
effective search space used: 1512601584
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)

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full-length cDNA and EST

Clone Information

BLAST Search Result