ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl42a07
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 168 7e-39
2dbj|AK098921.1| Oryza sativa (japonica cultivar-group) cDNA clon... 168 7e-39
3dbj|AK068713.1| Oryza sativa (japonica cultivar-group) cDNA clon... 168 7e-39
4dbj|AK067777.1| Oryza sativa (japonica cultivar-group) cDNA clon... 168 7e-39
5emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4,... 155 1e-34
6ref|NM_184141.2| Oryza sativa (japonica cultivar-group), mRNA 44 0.27
7dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.27
8dbj|AP002868.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.27
9dbj|AP002487.1| Oryza sativa (japonica cultivar-group) genomic D... 44 0.27
10dbj|AK067227.1| Oryza sativa (japonica cultivar-group) cDNA clon... 44 0.27
11gb|AY523973.1|AY523972S2 Azospirillum brasilense plasmid 90 MDa,... 42 1.1
12emb|AL731597.3|OSJN00237 Oryza sativa genomic DNA, chromosome 4,... 42 1.1
13gb|S69367.1| Pax-6/Pax-QNR=transcription factor {promoter} [Cotu... 42 1.1
14gb|BC025080.1| Mus musculus apoptosis antagonizing transcription... 40 4.2
15ref|NM_019816.1| Mus musculus apoptosis antagonizing transcripti... 40 4.2
16ref|XM_988395.1| PREDICTED: Mus musculus apoptosis antagonizing ... 40 4.2
17emb|CR647832.2|CNS0EYU6 Tetraodon nigroviridis full-length cDNA 40 4.2
18emb|AL603708.13| Mouse DNA sequence from clone RP23-381C21 on ch... 40 4.2
19gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome 40 4.2
20dbj|AK141334.1| Mus musculus 7 days embryo whole body cDNA, RIKE... 40 4.2
21dbj|AK077789.1| Mus musculus adult male thymus cDNA, RIKEN full-... 40 4.2
22dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2
23gb|AF222801.1|AF222801 Mus musculus traube mRNA, complete cds 40 4.2
24dbj|AP005064.3| Oryza sativa (japonica cultivar-group) genomic D... 40 4.2

>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score =  168 bits (85), Expect = 7e-39
 Identities = 160/185 (86%)
 Strand = Plus / Plus

                                                                            
Query: 132      gaaaatggggctgttccgggccgcgtcgggtttagcccgggtggcgctgcggaggagcct 191
                ||||||||||  ||| ||||| ||||| || || || |||||||||||| |||||| |||
Sbjct: 19187329 gaaaatggggtggtttcgggctgcgtccggattggctcgggtggcgctgaggaggaacct 19187388

                                                                            
Query: 192      gtcgcgcgctccggcgagcccgttcgccggccctgcgccgcggtacttccactcgacgct 251
                | |||| |||||||||| ||| || ||||| |||||||| |||||||||||||| || | 
Sbjct: 19187389 ggcgcgtgctccggcgaacccttttgccggtcctgcgccacggtacttccactccacccg 19187448

                                                                            
Query: 252      cccccggcggtacgcggcgcctgagccccgcgccgtgccgctctcgcgcctcacagacag 311
                ||||||||||| ||| || |||| |||||||||||||||||||||||||||||| |||||
Sbjct: 19187449 cccccggcggttcgccgctcctgtgccccgcgccgtgccgctctcgcgcctcaccgacag 19187508

                     
Query: 312      cttcc 316
                |||||
Sbjct: 19187509 cttcc 19187513



 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                     
Query: 2        catctttctcctcttcccctc 22
                |||||||||||||||||||||
Sbjct: 13847317 catctttctcctcttcccctc 13847297



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>dbj|AK098921.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002N21, full
           insert sequence
          Length = 3612

 Score =  168 bits (85), Expect = 7e-39
 Identities = 160/185 (86%)
 Strand = Plus / Plus

                                                                       
Query: 132 gaaaatggggctgttccgggccgcgtcgggtttagcccgggtggcgctgcggaggagcct 191
           ||||||||||  ||| ||||| ||||| || || || |||||||||||| |||||| |||
Sbjct: 271 gaaaatggggtggtttcgggctgcgtccggattggctcgggtggcgctgaggaggaacct 330

                                                                       
Query: 192 gtcgcgcgctccggcgagcccgttcgccggccctgcgccgcggtacttccactcgacgct 251
           | |||| |||||||||| ||| || ||||| |||||||| |||||||||||||| || | 
Sbjct: 331 ggcgcgtgctccggcgaacccttttgccggtcctgcgccacggtacttccactccacccg 390

                                                                       
Query: 252 cccccggcggtacgcggcgcctgagccccgcgccgtgccgctctcgcgcctcacagacag 311
           ||||||||||| ||| || |||| |||||||||||||||||||||||||||||| |||||
Sbjct: 391 cccccggcggttcgccgctcctgtgccccgcgccgtgccgctctcgcgcctcaccgacag 450

                
Query: 312 cttcc 316
           |||||
Sbjct: 451 cttcc 455



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>dbj|AK068713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013161L21, full
           insert sequence
          Length = 2576

 Score =  168 bits (85), Expect = 7e-39
 Identities = 160/185 (86%)
 Strand = Plus / Plus

                                                                       
Query: 132 gaaaatggggctgttccgggccgcgtcgggtttagcccgggtggcgctgcggaggagcct 191
           ||||||||||  ||| ||||| ||||| || || || |||||||||||| |||||| |||
Sbjct: 261 gaaaatggggtggtttcgggctgcgtccggattggctcgggtggcgctgaggaggaacct 320

                                                                       
Query: 192 gtcgcgcgctccggcgagcccgttcgccggccctgcgccgcggtacttccactcgacgct 251
           | |||| |||||||||| ||| || ||||| |||||||| |||||||||||||| || | 
Sbjct: 321 ggcgcgtgctccggcgaacccttttgccggtcctgcgccacggtacttccactccacccg 380

                                                                       
Query: 252 cccccggcggtacgcggcgcctgagccccgcgccgtgccgctctcgcgcctcacagacag 311
           ||||||||||| ||| || |||| |||||||||||||||||||||||||||||| |||||
Sbjct: 381 cccccggcggttcgccgctcctgtgccccgcgccgtgccgctctcgcgcctcaccgacag 440

                
Query: 312 cttcc 316
           |||||
Sbjct: 441 cttcc 445



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>dbj|AK067777.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116O03, full
           insert sequence
          Length = 3581

 Score =  168 bits (85), Expect = 7e-39
 Identities = 160/185 (86%)
 Strand = Plus / Plus

                                                                       
Query: 132 gaaaatggggctgttccgggccgcgtcgggtttagcccgggtggcgctgcggaggagcct 191
           ||||||||||  ||| ||||| ||||| || || || |||||||||||| |||||| |||
Sbjct: 317 gaaaatggggtggtttcgggctgcgtcaggattggctcgggtggcgctgaggaggaacct 376

                                                                       
Query: 192 gtcgcgcgctccggcgagcccgttcgccggccctgcgccgcggtacttccactcgacgct 251
           | |||| |||||||||| ||| || ||||| |||||||| |||||||||||||| || | 
Sbjct: 377 ggcgcgtgctccggcgaacccttttgccggtcctgcgccacggtacttccactccacccg 436

                                                                       
Query: 252 cccccggcggtacgcggcgcctgagccccgcgccgtgccgctctcgcgcctcacagacag 311
           ||||||||||| ||| || |||| |||||||||||||||||||||||||||||| |||||
Sbjct: 437 cccccggcggttcgccgctcctgtgccccgcgccgtgccgctctcgcgcctcaccgacag 496

                
Query: 312 cttcc 316
           |||||
Sbjct: 497 cttcc 501



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>emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053B21,
              complete sequence
          Length = 151936

 Score =  155 bits (78), Expect = 1e-34
 Identities = 160/186 (86%), Gaps = 1/186 (0%)
 Strand = Plus / Plus

                                                                          
Query: 132    gaaaatggggctgttccgggccgcgtcgggtttagcccgggtggcgctgcg-gaggagcc 190
              ||||||||||  ||| ||||| ||||| || || || |||||||||||| | ||||| ||
Sbjct: 120850 gaaaatggggtggtttcgggctgcgtccggattggctcgggtggcgctgagtgaggaacc 120909

                                                                          
Query: 191    tgtcgcgcgctccggcgagcccgttcgccggccctgcgccgcggtacttccactcgacgc 250
              || |||| |||||||||| ||| || ||||| |||||||| |||||||||||||| || |
Sbjct: 120910 tggcgcgtgctccggcgaacccttttgccggtcctgcgccacggtacttccactccaccc 120969

                                                                          
Query: 251    tcccccggcggtacgcggcgcctgagccccgcgccgtgccgctctcgcgcctcacagaca 310
               ||||||||||| ||| || |||| |||||||||||||||||||||||||||||| ||||
Sbjct: 120970 gcccccggcggttcgccgctcctgtgccccgcgccgtgccgctctcgcgcctcaccgaca 121029

                    
Query: 311    gcttcc 316
              ||||||
Sbjct: 121030 gcttcc 121035



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>ref|NM_184141.2| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1870

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 12  ctcttcccctcgcggcggcgtc 33
           ||||||||||||||||||||||
Sbjct: 80  ctcttcccctcgcggcggcgtc 101



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
               sequence
          Length = 43261740

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                     
Query: 12      ctcttcccctcgcggcggcgtc 33
               ||||||||||||||||||||||
Sbjct: 1170048 ctcttcccctcgcggcggcgtc 1170027



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>dbj|AP002868.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
              clone:P0698A04
          Length = 141079

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                    
Query: 12     ctcttcccctcgcggcggcgtc 33
              ||||||||||||||||||||||
Sbjct: 139362 ctcttcccctcgcggcggcgtc 139341



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>dbj|AP002487.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0684C01
          Length = 78600

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Minus

                                   
Query: 12    ctcttcccctcgcggcggcgtc 33
             ||||||||||||||||||||||
Sbjct: 24351 ctcttcccctcgcggcggcgtc 24330



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>dbj|AK067227.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098B14, full
           insert sequence
          Length = 1873

 Score = 44.1 bits (22), Expect = 0.27
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 12  ctcttcccctcgcggcggcgtc 33
           ||||||||||||||||||||||
Sbjct: 80  ctcttcccctcgcggcggcgtc 101



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>gb|AY523973.1|AY523972S2 Azospirillum brasilense plasmid 90 MDa, partial sequence
          Length = 67651

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                  
Query: 213   gttcgccggccctgcgccgcg 233
             |||||||||||||||||||||
Sbjct: 29918 gttcgccggccctgcgccgcg 29938



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>emb|AL731597.3|OSJN00237 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0023J03,
             complete sequence
          Length = 175555

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                  
Query: 2     catctttctcctcttcccctc 22
             |||||||||||||||||||||
Sbjct: 60976 catctttctcctcttcccctc 60956



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>gb|S69367.1| Pax-6/Pax-QNR=transcription factor {promoter} [Coturnix sp.
           SP-1993, Genomic, 1513 nt]
          Length = 1513

 Score = 42.1 bits (21), Expect = 1.1
 Identities = 21/21 (100%)
 Strand = Plus / Minus

                                
Query: 276 gccccgcgccgtgccgctctc 296
           |||||||||||||||||||||
Sbjct: 673 gccccgcgccgtgccgctctc 653



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>gb|BC025080.1| Mus musculus apoptosis antagonizing transcription factor, mRNA
           (cDNA clone MGC:35916 IMAGE:2648117), complete cds
          Length = 1800

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 2   catctttctcctcttcccct 21
           ||||||||||||||||||||
Sbjct: 251 catctttctcctcttcccct 232



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>ref|NM_019816.1| Mus musculus apoptosis antagonizing transcription factor (Aatf),
           mRNA
          Length = 1844

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 2   catctttctcctcttcccct 21
           ||||||||||||||||||||
Sbjct: 264 catctttctcctcttcccct 245



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>ref|XM_988395.1| PREDICTED: Mus musculus apoptosis antagonizing transcription factor
           (Aatf), mRNA
          Length = 1883

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 2   catctttctcctcttcccct 21
           ||||||||||||||||||||
Sbjct: 325 catctttctcctcttcccct 306



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>emb|CR647832.2|CNS0EYU6 Tetraodon nigroviridis full-length cDNA
          Length = 1651

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 160  ggtttagcccgggtggcgct 179
            ||||||||||||||||||||
Sbjct: 1111 ggtttagcccgggtggcgct 1130



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>emb|AL603708.13| Mouse DNA sequence from clone RP23-381C21 on chromosome 11, complete
             sequence
          Length = 198743

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 2     catctttctcctcttcccct 21
             ||||||||||||||||||||
Sbjct: 52540 catctttctcctcttcccct 52559



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>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome
          Length = 5513844

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 215    tcgccggccctgcgccgcgg 234
              ||||||||||||||||||||
Sbjct: 530615 tcgccggccctgcgccgcgg 530634



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>dbj|AK141334.1| Mus musculus 7 days embryo whole body cDNA, RIKEN full-length
           enriched library, clone:C430031I20 product:apoptosis
           antagonizing transcription factor, full insert sequence
          Length = 1790

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 2   catctttctcctcttcccct 21
           ||||||||||||||||||||
Sbjct: 262 catctttctcctcttcccct 243



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>dbj|AK077789.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched
           library, clone:5830465M17 product:traube, full insert
           sequence
          Length = 1995

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 2   catctttctcctcttcccct 21
           ||||||||||||||||||||
Sbjct: 288 catctttctcctcttcccct 269



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>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                       
Query: 10      tcctcttcccctcgcggcggcgtc 33
               |||||||||| |||||||||||||
Sbjct: 8976600 tcctcttcccttcgcggcggcgtc 8976577



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>gb|AF222801.1|AF222801 Mus musculus traube mRNA, complete cds
          Length = 1844

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 2   catctttctcctcttcccct 21
           ||||||||||||||||||||
Sbjct: 264 catctttctcctcttcccct 245



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>dbj|AP005064.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC
             clone:OSJNBa0049G15
          Length = 155303

 Score = 40.1 bits (20), Expect = 4.2
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 10    tcctcttcccctcgcggcggcgtc 33
             |||||||||| |||||||||||||
Sbjct: 78262 tcctcttcccttcgcggcggcgtc 78239


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,286,852
Number of Sequences: 3902068
Number of extensions: 2286852
Number of successful extensions: 45740
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 45538
Number of HSP's gapped (non-prelim): 201
length of query: 316
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 294
effective length of database: 17,147,199,772
effective search space: 5041276732968
effective search space used: 5041276732968
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
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