Clone Name | bastl42a07 |
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Clone Library Name | barley_pub |
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete sequence Length = 35498469 Score = 168 bits (85), Expect = 7e-39 Identities = 160/185 (86%) Strand = Plus / Plus Query: 132 gaaaatggggctgttccgggccgcgtcgggtttagcccgggtggcgctgcggaggagcct 191 |||||||||| ||| ||||| ||||| || || || |||||||||||| |||||| ||| Sbjct: 19187329 gaaaatggggtggtttcgggctgcgtccggattggctcgggtggcgctgaggaggaacct 19187388 Query: 192 gtcgcgcgctccggcgagcccgttcgccggccctgcgccgcggtacttccactcgacgct 251 | |||| |||||||||| ||| || ||||| |||||||| |||||||||||||| || | Sbjct: 19187389 ggcgcgtgctccggcgaacccttttgccggtcctgcgccacggtacttccactccacccg 19187448 Query: 252 cccccggcggtacgcggcgcctgagccccgcgccgtgccgctctcgcgcctcacagacag 311 ||||||||||| ||| || |||| |||||||||||||||||||||||||||||| ||||| Sbjct: 19187449 cccccggcggttcgccgctcctgtgccccgcgccgtgccgctctcgcgcctcaccgacag 19187508 Query: 312 cttcc 316 ||||| Sbjct: 19187509 cttcc 19187513 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2 catctttctcctcttcccctc 22 ||||||||||||||||||||| Sbjct: 13847317 catctttctcctcttcccctc 13847297
>dbj|AK098921.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002N21, full insert sequence Length = 3612 Score = 168 bits (85), Expect = 7e-39 Identities = 160/185 (86%) Strand = Plus / Plus Query: 132 gaaaatggggctgttccgggccgcgtcgggtttagcccgggtggcgctgcggaggagcct 191 |||||||||| ||| ||||| ||||| || || || |||||||||||| |||||| ||| Sbjct: 271 gaaaatggggtggtttcgggctgcgtccggattggctcgggtggcgctgaggaggaacct 330 Query: 192 gtcgcgcgctccggcgagcccgttcgccggccctgcgccgcggtacttccactcgacgct 251 | |||| |||||||||| ||| || ||||| |||||||| |||||||||||||| || | Sbjct: 331 ggcgcgtgctccggcgaacccttttgccggtcctgcgccacggtacttccactccacccg 390 Query: 252 cccccggcggtacgcggcgcctgagccccgcgccgtgccgctctcgcgcctcacagacag 311 ||||||||||| ||| || |||| |||||||||||||||||||||||||||||| ||||| Sbjct: 391 cccccggcggttcgccgctcctgtgccccgcgccgtgccgctctcgcgcctcaccgacag 450 Query: 312 cttcc 316 ||||| Sbjct: 451 cttcc 455
>dbj|AK068713.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013161L21, full insert sequence Length = 2576 Score = 168 bits (85), Expect = 7e-39 Identities = 160/185 (86%) Strand = Plus / Plus Query: 132 gaaaatggggctgttccgggccgcgtcgggtttagcccgggtggcgctgcggaggagcct 191 |||||||||| ||| ||||| ||||| || || || |||||||||||| |||||| ||| Sbjct: 261 gaaaatggggtggtttcgggctgcgtccggattggctcgggtggcgctgaggaggaacct 320 Query: 192 gtcgcgcgctccggcgagcccgttcgccggccctgcgccgcggtacttccactcgacgct 251 | |||| |||||||||| ||| || ||||| |||||||| |||||||||||||| || | Sbjct: 321 ggcgcgtgctccggcgaacccttttgccggtcctgcgccacggtacttccactccacccg 380 Query: 252 cccccggcggtacgcggcgcctgagccccgcgccgtgccgctctcgcgcctcacagacag 311 ||||||||||| ||| || |||| |||||||||||||||||||||||||||||| ||||| Sbjct: 381 cccccggcggttcgccgctcctgtgccccgcgccgtgccgctctcgcgcctcaccgacag 440 Query: 312 cttcc 316 ||||| Sbjct: 441 cttcc 445
>dbj|AK067777.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013116O03, full insert sequence Length = 3581 Score = 168 bits (85), Expect = 7e-39 Identities = 160/185 (86%) Strand = Plus / Plus Query: 132 gaaaatggggctgttccgggccgcgtcgggtttagcccgggtggcgctgcggaggagcct 191 |||||||||| ||| ||||| ||||| || || || |||||||||||| |||||| ||| Sbjct: 317 gaaaatggggtggtttcgggctgcgtcaggattggctcgggtggcgctgaggaggaacct 376 Query: 192 gtcgcgcgctccggcgagcccgttcgccggccctgcgccgcggtacttccactcgacgct 251 | |||| |||||||||| ||| || ||||| |||||||| |||||||||||||| || | Sbjct: 377 ggcgcgtgctccggcgaacccttttgccggtcctgcgccacggtacttccactccacccg 436 Query: 252 cccccggcggtacgcggcgcctgagccccgcgccgtgccgctctcgcgcctcacagacag 311 ||||||||||| ||| || |||| |||||||||||||||||||||||||||||| ||||| Sbjct: 437 cccccggcggttcgccgctcctgtgccccgcgccgtgccgctctcgcgcctcaccgacag 496 Query: 312 cttcc 316 ||||| Sbjct: 497 cttcc 501
>emb|AL731599.2|OSJN00244 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0053B21, complete sequence Length = 151936 Score = 155 bits (78), Expect = 1e-34 Identities = 160/186 (86%), Gaps = 1/186 (0%) Strand = Plus / Plus Query: 132 gaaaatggggctgttccgggccgcgtcgggtttagcccgggtggcgctgcg-gaggagcc 190 |||||||||| ||| ||||| ||||| || || || |||||||||||| | ||||| || Sbjct: 120850 gaaaatggggtggtttcgggctgcgtccggattggctcgggtggcgctgagtgaggaacc 120909 Query: 191 tgtcgcgcgctccggcgagcccgttcgccggccctgcgccgcggtacttccactcgacgc 250 || |||| |||||||||| ||| || ||||| |||||||| |||||||||||||| || | Sbjct: 120910 tggcgcgtgctccggcgaacccttttgccggtcctgcgccacggtacttccactccaccc 120969 Query: 251 tcccccggcggtacgcggcgcctgagccccgcgccgtgccgctctcgcgcctcacagaca 310 ||||||||||| ||| || |||| |||||||||||||||||||||||||||||| |||| Sbjct: 120970 gcccccggcggttcgccgctcctgtgccccgcgccgtgccgctctcgcgcctcaccgaca 121029 Query: 311 gcttcc 316 |||||| Sbjct: 121030 gcttcc 121035
>ref|NM_184141.2| Oryza sativa (japonica cultivar-group), mRNA Length = 1870 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Plus Query: 12 ctcttcccctcgcggcggcgtc 33 |||||||||||||||||||||| Sbjct: 80 ctcttcccctcgcggcggcgtc 101
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Minus Query: 12 ctcttcccctcgcggcggcgtc 33 |||||||||||||||||||||| Sbjct: 1170048 ctcttcccctcgcggcggcgtc 1170027
>dbj|AP002868.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0698A04 Length = 141079 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Minus Query: 12 ctcttcccctcgcggcggcgtc 33 |||||||||||||||||||||| Sbjct: 139362 ctcttcccctcgcggcggcgtc 139341
>dbj|AP002487.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0684C01 Length = 78600 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Minus Query: 12 ctcttcccctcgcggcggcgtc 33 |||||||||||||||||||||| Sbjct: 24351 ctcttcccctcgcggcggcgtc 24330
>dbj|AK067227.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013098B14, full insert sequence Length = 1873 Score = 44.1 bits (22), Expect = 0.27 Identities = 22/22 (100%) Strand = Plus / Plus Query: 12 ctcttcccctcgcggcggcgtc 33 |||||||||||||||||||||| Sbjct: 80 ctcttcccctcgcggcggcgtc 101
>gb|AY523973.1|AY523972S2 Azospirillum brasilense plasmid 90 MDa, partial sequence Length = 67651 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Plus Query: 213 gttcgccggccctgcgccgcg 233 ||||||||||||||||||||| Sbjct: 29918 gttcgccggccctgcgccgcg 29938
>emb|AL731597.3|OSJN00237 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0023J03, complete sequence Length = 175555 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 2 catctttctcctcttcccctc 22 ||||||||||||||||||||| Sbjct: 60976 catctttctcctcttcccctc 60956
>gb|S69367.1| Pax-6/Pax-QNR=transcription factor {promoter} [Coturnix sp. SP-1993, Genomic, 1513 nt] Length = 1513 Score = 42.1 bits (21), Expect = 1.1 Identities = 21/21 (100%) Strand = Plus / Minus Query: 276 gccccgcgccgtgccgctctc 296 ||||||||||||||||||||| Sbjct: 673 gccccgcgccgtgccgctctc 653
>gb|BC025080.1| Mus musculus apoptosis antagonizing transcription factor, mRNA (cDNA clone MGC:35916 IMAGE:2648117), complete cds Length = 1800 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 catctttctcctcttcccct 21 |||||||||||||||||||| Sbjct: 251 catctttctcctcttcccct 232
>ref|NM_019816.1| Mus musculus apoptosis antagonizing transcription factor (Aatf), mRNA Length = 1844 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 catctttctcctcttcccct 21 |||||||||||||||||||| Sbjct: 264 catctttctcctcttcccct 245
>ref|XM_988395.1| PREDICTED: Mus musculus apoptosis antagonizing transcription factor (Aatf), mRNA Length = 1883 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 catctttctcctcttcccct 21 |||||||||||||||||||| Sbjct: 325 catctttctcctcttcccct 306
>emb|CR647832.2|CNS0EYU6 Tetraodon nigroviridis full-length cDNA Length = 1651 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 160 ggtttagcccgggtggcgct 179 |||||||||||||||||||| Sbjct: 1111 ggtttagcccgggtggcgct 1130
>emb|AL603708.13| Mouse DNA sequence from clone RP23-381C21 on chromosome 11, complete sequence Length = 198743 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 2 catctttctcctcttcccct 21 |||||||||||||||||||| Sbjct: 52540 catctttctcctcttcccct 52559
>gb|CP000301.1| Rhodopseudomonas palustris BisB18, complete genome Length = 5513844 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Plus Query: 215 tcgccggccctgcgccgcgg 234 |||||||||||||||||||| Sbjct: 530615 tcgccggccctgcgccgcgg 530634
>dbj|AK141334.1| Mus musculus 7 days embryo whole body cDNA, RIKEN full-length enriched library, clone:C430031I20 product:apoptosis antagonizing transcription factor, full insert sequence Length = 1790 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 catctttctcctcttcccct 21 |||||||||||||||||||| Sbjct: 262 catctttctcctcttcccct 243
>dbj|AK077789.1| Mus musculus adult male thymus cDNA, RIKEN full-length enriched library, clone:5830465M17 product:traube, full insert sequence Length = 1995 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 catctttctcctcttcccct 21 |||||||||||||||||||| Sbjct: 288 catctttctcctcttcccct 269
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete sequence Length = 28434780 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 10 tcctcttcccctcgcggcggcgtc 33 |||||||||| ||||||||||||| Sbjct: 8976600 tcctcttcccttcgcggcggcgtc 8976577
>gb|AF222801.1|AF222801 Mus musculus traube mRNA, complete cds Length = 1844 Score = 40.1 bits (20), Expect = 4.2 Identities = 20/20 (100%) Strand = Plus / Minus Query: 2 catctttctcctcttcccct 21 |||||||||||||||||||| Sbjct: 264 catctttctcctcttcccct 245
>dbj|AP005064.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, BAC clone:OSJNBa0049G15 Length = 155303 Score = 40.1 bits (20), Expect = 4.2 Identities = 23/24 (95%) Strand = Plus / Minus Query: 10 tcctcttcccctcgcggcggcgtc 33 |||||||||| ||||||||||||| Sbjct: 78262 tcctcttcccttcgcggcggcgtc 78239 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,286,852 Number of Sequences: 3902068 Number of extensions: 2286852 Number of successful extensions: 45740 Number of sequences better than 10.0: 24 Number of HSP's better than 10.0 without gapping: 25 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 45538 Number of HSP's gapped (non-prelim): 201 length of query: 316 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 294 effective length of database: 17,147,199,772 effective search space: 5041276732968 effective search space used: 5041276732968 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)