ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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更新日:2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl42a05
Clone Library Name barley_pub

No. Definition Score
(bits)
E
Value
1emb|AL939129.1|SCO939129 Streptomyces coelicolor A3(2) complete ... 42 0.065
2ref|XM_322526.1| Neurospora crassa OR74A hypothetical protein (N... 40 0.25
3ref|XM_951612.1| Neurospora crassa OR74A hypothetical protein (N... 40 0.25
4emb|BX908807.1| Neurospora crassa DNA linkage group III BAC cont... 40 0.25
5ref|XM_753245.1| Ustilago maydis 521 hypothetical protein (UM021... 38 1.0
6ref|NM_193807.1| Oryza sativa (japonica cultivar-group), predic... 36 4.0
7gb|CP000081.1| Leishmania major chromosome 35, complete sequence 36 4.0
8gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chr... 36 4.0
9dbj|AP003281.3| Oryza sativa (japonica cultivar-group) genomic D... 36 4.0
10dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010 36 4.0
11gb|AC011806.1|AC011806 Genomic Sequence For Oryza sativa Clone 1... 36 4.0
12dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic D... 36 4.0
13dbj|AP008247.2| Oryza sativa (japonica cultivar-group) genomic D... 36 4.0
14dbj|AP006530.3| Oryza sativa (japonica cultivar-group) genomic D... 36 4.0
15dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome 36 4.0
16dbj|AP003236.3| Oryza sativa (japonica cultivar-group) genomic D... 36 4.0
17dbj|AK105265.1| Oryza sativa (japonica cultivar-group) cDNA clon... 36 4.0
18gb|AE000782.1| Archaeoglobus fulgidus DSM 4304, complete genome 36 4.0

>emb|AL939129.1|SCO939129 Streptomyces coelicolor A3(2) complete genome; segment 26/29
          Length = 292200

 Score = 42.1 bits (21), Expect = 0.065
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                   
Query: 17     ctcgaagccgtcaccaccgcc 37
              |||||||||||||||||||||
Sbjct: 267083 ctcgaagccgtcaccaccgcc 267103



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>ref|XM_322526.1| Neurospora crassa OR74A hypothetical protein (NCU00441.1) partial
           mRNA
          Length = 981

 Score = 40.1 bits (20), Expect = 0.25
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 7   cctcctctgtctcgaagccg 26
           ||||||||||||||||||||
Sbjct: 582 cctcctctgtctcgaagccg 563



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>ref|XM_951612.1| Neurospora crassa OR74A hypothetical protein (NCU00441.1) partial
           mRNA
          Length = 981

 Score = 40.1 bits (20), Expect = 0.25
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                               
Query: 7   cctcctctgtctcgaagccg 26
           ||||||||||||||||||||
Sbjct: 582 cctcctctgtctcgaagccg 563



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>emb|BX908807.1| Neurospora crassa DNA linkage group III BAC contig B13B7
          Length = 93134

 Score = 40.1 bits (20), Expect = 0.25
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 7     cctcctctgtctcgaagccg 26
             ||||||||||||||||||||
Sbjct: 13174 cctcctctgtctcgaagccg 13193



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>ref|XM_753245.1| Ustilago maydis 521 hypothetical protein (UM02191.1) partial mRNA
          Length = 2277

 Score = 38.2 bits (19), Expect = 1.0
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                               
Query: 19   cgaagccgtcaccaccgcc 37
            |||||||||||||||||||
Sbjct: 1638 cgaagccgtcaccaccgcc 1656



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>ref|NM_193807.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 3369

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 18  tcgaagccgtcaccaccg 35
           ||||||||||||||||||
Sbjct: 191 tcgaagccgtcaccaccg 208



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>gb|CP000081.1| Leishmania major chromosome 35, complete sequence
          Length = 2090491

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                
Query: 2      ccgtccctcctctgtctc 19
              ||||||||||||||||||
Sbjct: 962677 ccgtccctcctctgtctc 962694



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>gb|AE017341.1| Cryptococcus neoformans var. neoformans JEC21 chromosome 1, complete
               sequence
          Length = 2300533

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 8       ctcctctgtctcgaagcc 25
               ||||||||||||||||||
Sbjct: 1434989 ctcctctgtctcgaagcc 1434972



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>dbj|AP003281.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0560B06
          Length = 161720

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 18    tcgaagccgtcaccaccg 35
             ||||||||||||||||||
Sbjct: 81054 tcgaagccgtcaccaccg 81037



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>dbj|AP007175.1| Aspergillus oryzae RIB40 genomic DNA, SC010
          Length = 2039961

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                 
Query: 7       cctcctctgtctcgaagc 24
               ||||||||||||||||||
Sbjct: 1125917 cctcctctgtctcgaagc 1125900



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>gb|AC011806.1|AC011806 Genomic Sequence For Oryza sativa Clone 10P20, Lemont Strain, Complete
             Sequence, complete sequence
          Length = 105198

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 18    tcgaagccgtcaccaccg 35
             ||||||||||||||||||
Sbjct: 18771 tcgaagccgtcaccaccg 18754



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>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete
                sequence
          Length = 43261740

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                  
Query: 18       tcgaagccgtcaccaccg 35
                ||||||||||||||||||
Sbjct: 15065002 tcgaagccgtcaccaccg 15064985



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>dbj|AP008247.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0784G04
          Length = 157458

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 18    tcgaagccgtcaccaccg 35
             ||||||||||||||||||
Sbjct: 94581 tcgaagccgtcaccaccg 94564



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>dbj|AP006530.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC
             clone:B1329D01
          Length = 141938

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 18    tcgaagccgtcaccaccg 35
             ||||||||||||||||||
Sbjct: 91249 tcgaagccgtcaccaccg 91232



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>dbj|AP006618.1| Nocardia farcinica IFM 10152 DNA, complete genome
          Length = 6021225

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                                 
Query: 19      cgaagccgtcaccaccgc 36
               ||||||||||||||||||
Sbjct: 1699944 cgaagccgtcaccaccgc 1699961



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>dbj|AP003236.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC
             clone:P0043B10
          Length = 167399

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 18    tcgaagccgtcaccaccg 35
             ||||||||||||||||||
Sbjct: 36968 tcgaagccgtcaccaccg 36951



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>dbj|AK105265.1| Oryza sativa (japonica cultivar-group) cDNA clone:001-115-D05, full
           insert sequence
          Length = 3749

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                             
Query: 18  tcgaagccgtcaccaccg 35
           ||||||||||||||||||
Sbjct: 283 tcgaagccgtcaccaccg 300



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>gb|AE000782.1| Archaeoglobus fulgidus DSM 4304, complete genome
          Length = 2178400

 Score = 36.2 bits (18), Expect = 4.0
 Identities = 21/22 (95%)
 Strand = Plus / Plus

                                     
Query: 7       cctcctctgtctcgaagccgtc 28
               |||||||| |||||||||||||
Sbjct: 2006316 cctcctctatctcgaagccgtc 2006337


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 222,609
Number of Sequences: 3902068
Number of extensions: 222609
Number of successful extensions: 63576
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 63339
Number of HSP's gapped (non-prelim): 237
length of query: 38
length of database: 17,233,045,268
effective HSP length: 20
effective length of query: 18
effective length of database: 17,155,003,908
effective search space: 308790070344
effective search space used: 308790070344
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 18 (36.2 bits)
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