ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl42a04 |
|---|---|
| Clone Library Name | barley_pub |
>RLK5_ARATH (P47735) Receptor-like protein kinase 5 precursor (EC 2.7.11.1)| Length = 999 Score = 35.4 bits (80), Expect = 0.035 Identities = 23/55 (41%), Positives = 30/55 (54%) Frame = +1 Query: 130 NDPAGALSPWTYXXXXXXXXTRSLSPPWCAWPGVACDAATGDVVGVDLSRRNLSG 294 +DPA +LS W+ ++P C W GV+CD AT +VV VDLS L G Sbjct: 36 SDPAQSLSSWS--------DNNDVTP--CKWLGVSCD-ATSNVVSVDLSSFMLVG 79
>BRL1_ARATH (Q9ZWC8) Serine/threonine-protein kinase BRI1-like 1 precursor (EC| 2.7.11.1) (BRASSINOSTEROID INSENSITIVE 1-like protein 1) Length = 1166 Score = 33.1 bits (74), Expect = 0.17 Identities = 18/57 (31%), Positives = 26/57 (45%) Frame = +1 Query: 130 NDPAGALSPWTYXXXXXXXXTRSLSPPWCAWPGVACDAATGDVVGVDLSRRNLSGTV 300 +DP L W Y C+W GV+C + G +VG+DL L+GT+ Sbjct: 48 SDPNNVLGNWKYESGRGS----------CSWRGVSC-SDDGRIVGLDLRNSGLTGTL 93
>BRL3_ARATH (Q9LJF3) Serine/threonine-protein kinase BRI1-like 3 precursor (EC| 2.7.11.1) (BRASSINOSTEROID INSENSITIVE 1-like protein 3) Length = 1164 Score = 32.7 bits (73), Expect = 0.23 Identities = 18/57 (31%), Positives = 26/57 (45%) Frame = +1 Query: 130 NDPAGALSPWTYXXXXXXXXTRSLSPPWCAWPGVACDAATGDVVGVDLSRRNLSGTV 300 +DP L W Y C W GV+C ++ G V+G+DL L+GT+ Sbjct: 47 SDPTNFLGNWRYGSGRDP----------CTWRGVSC-SSDGRVIGLDLRNGGLTGTL 92
>NORK_PEA (Q8LKZ1) Nodulation receptor kinase precursor (EC 2.7.11.1)| Length = 924 Score = 32.0 bits (71), Expect = 0.39 Identities = 14/29 (48%), Positives = 18/29 (62%), Gaps = 2/29 (6%) Frame = +1 Query: 220 WPGVACDAATGD--VVGVDLSRRNLSGTV 300 W GVACD + G + +DLS NL GT+ Sbjct: 393 WKGVACDGSNGSSVITKLDLSSSNLKGTI 421
>PHYB_ORYSA (P25764) Phytochrome B| Length = 1171 Score = 31.2 bits (69), Expect = 0.66 Identities = 13/25 (52%), Positives = 16/25 (64%) Frame = -3 Query: 272 RSTPTTSPVAASHATPGHAHHGGES 198 R+TPT SP +A A P H HH +S Sbjct: 6 RATPTRSPSSARPAAPRHQHHHSQS 30
>PHYB_SORBI (P93527) Phytochrome B| Length = 1178 Score = 29.6 bits (65), Expect = 1.9 Identities = 12/21 (57%), Positives = 14/21 (66%) Frame = -3 Query: 272 RSTPTTSPVAASHATPGHAHH 210 R+TPT SP +A P HAHH Sbjct: 6 RATPTRSPSSARPEAPRHAHH 26
>NORK_MEDTR (Q8L4H4) Nodulation receptor kinase precursor (EC 2.7.11.1) (Does| not make infections protein 2) (Symbiosis receptor-like kinase) (MtSYMRK) Length = 925 Score = 29.6 bits (65), Expect = 1.9 Identities = 12/29 (41%), Positives = 17/29 (58%), Gaps = 2/29 (6%) Frame = +1 Query: 220 WPGVACDAATGD--VVGVDLSRRNLSGTV 300 W G+ CD +TG + +DLS NL G + Sbjct: 395 WKGITCDDSTGSSIITKLDLSSNNLKGAI 423
>ATBF1_MOUSE (Q61329) Alpha-fetoprotein enhancer-binding protein (AT motif-binding| factor) (AT-binding transcription factor 1) Length = 3726 Score = 29.3 bits (64), Expect = 2.5 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +2 Query: 167 PPRPPQAPLGRSPLRGAHGPVSRATRPQVTS 259 PP PP PL +P + A P A+ P +TS Sbjct: 2050 PPPPPPPPLPTAPPQPASAPAIPASAPPITS 2080
>BAT2_RAT (Q6MG48) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2161 Score = 28.9 bits (63), Expect = 3.3 Identities = 14/29 (48%), Positives = 15/29 (51%) Frame = +2 Query: 155 HGRTPPRPPQAPLGRSPLRGAHGPVSRAT 241 H R P PPQAP G SP H RA+ Sbjct: 1496 HPRPKPGPPQAPQGSSPRPPTHYDPPRAS 1524
>HEM6_HUMAN (P36551) Coproporphyrinogen III oxidase, mitochondrial precursor| (EC 1.3.3.3) (Coproporphyrinogenase) (Coprogen oxidase) (COX) Length = 454 Score = 28.9 bits (63), Expect = 3.3 Identities = 21/41 (51%), Positives = 23/41 (56%), Gaps = 2/41 (4%) Frame = -2 Query: 249 CGRVARDTGPCAPRRGERPSGACGGRGGVRPWAQR--AGRV 133 C VAR G C G R CGG GG+R W+QR AGRV Sbjct: 13 CWLVAR--GGCG---GPRAWSQCGG-GGLRAWSQRSAAGRV 47
>RTN4_MOUSE (Q99P72) Reticulon-4 (Neurite outgrowth inhibitor) (Nogo protein)| Length = 1162 Score = 28.9 bits (63), Expect = 3.3 Identities = 15/44 (34%), Positives = 19/44 (43%) Frame = +2 Query: 140 PAR*AHGRTPPRPPQAPLGRSPLRGAHGPVSRATRPQVTSSGLI 271 P++ PP P AP G SPL P S P+ SG + Sbjct: 125 PSKLPEDDEPPARPPAPAGASPLAEPAAPPSTPAAPKRRGSGSV 168
>ATBF1_HUMAN (Q15911) Alpha-fetoprotein enhancer-binding protein (AT motif-binding| factor) (AT-binding transcription factor 1) Length = 3703 Score = 28.5 bits (62), Expect = 4.3 Identities = 13/31 (41%), Positives = 17/31 (54%) Frame = +2 Query: 167 PPRPPQAPLGRSPLRGAHGPVSRATRPQVTS 259 PP PP PL +P + A P A+ P +TS Sbjct: 2043 PPPPPPPPLPAAPPQPASTPAIPASAPPITS 2073
>MYBP_MAIZE (P27898) Myb-related protein P| Length = 399 Score = 28.1 bits (61), Expect = 5.6 Identities = 14/35 (40%), Positives = 17/35 (48%) Frame = +2 Query: 158 GRTPPRPPQAPLGRSPLRGAHGPVSRATRPQVTSS 262 GRTP RPP+A R+ A P A P +S Sbjct: 148 GRTPGRPPKASASRTKQADADQPGGEAKGPAAAAS 182
>RLUB_XANCP (Q8P8M6) Ribosomal large subunit pseudouridine synthase B (EC| 5.4.99.-) (rRNA-uridine isomerase B) (rRNA pseudouridylate synthase B) Length = 492 Score = 28.1 bits (61), Expect = 5.6 Identities = 19/49 (38%), Positives = 22/49 (44%), Gaps = 1/49 (2%) Frame = -2 Query: 264 PDDVTCGRVA-RDTGPCAPRRGERPSGACGGRGGVRPWAQRAGRVVQGG 121 PD V+ G R+ GP G+ A G GG RP A GR GG Sbjct: 390 PDGVSTGPSGHRNAGPGGAGTGQPRPYAKKGPGGARPGAGGQGRGAAGG 438
>MUC1_MOUSE (Q02496) Mucin-1 precursor (Polymorphic epithelial mucin) (PEMT)| (Episialin) Length = 630 Score = 27.7 bits (60), Expect = 7.3 Identities = 14/44 (31%), Positives = 21/44 (47%) Frame = -3 Query: 269 STPTTSPVAASHATPGHAHHGGESDRVXXXXXXXAYVHGLSAPA 138 S+P TSP S ++P H+ + R A + G S+PA Sbjct: 156 SSPATSPPGDSTSSPDHSSTSSPATRAPEDSTSTAVLSGTSSPA 199
>HM39_CAEEL (Q22812) Homeobox protein ceh-39| Length = 399 Score = 27.7 bits (60), Expect = 7.3 Identities = 13/32 (40%), Positives = 18/32 (56%) Frame = +2 Query: 140 PAR*AHGRTPPRPPQAPLGRSPLRGAHGPVSR 235 PA+ + GRT PR P++ P RG P S+ Sbjct: 157 PAKKSRGRTAPRTPKSLETSKPGRGVKRPASK 188
>HCN2_HUMAN (Q9UL51) Potassium/sodium hyperpolarization-activated cyclic| nucleotide-gated channel 2 (Brain cyclic nucleotide gated channel 2) (BCNG-2) Length = 889 Score = 27.7 bits (60), Expect = 7.3 Identities = 12/33 (36%), Positives = 14/33 (42%) Frame = +2 Query: 167 PPRPPQAPLGRSPLRGAHGPVSRATRPQVTSSG 265 PP PP P G P H P + A P+ G Sbjct: 37 PPPPPAPPPGPGPAPPQHPPRAEALPPEAADEG 69
>SDK1_HUMAN (Q7Z5N4) Protein sidekick-1 precursor| Length = 2213 Score = 27.7 bits (60), Expect = 7.3 Identities = 14/23 (60%), Positives = 15/23 (65%) Frame = -2 Query: 207 RGERPSGACGGRGGVRPWAQRAG 139 RG RPS A GG GG P +RAG Sbjct: 3 RGARPSAAGGGGGGAEP-PERAG 24
>TBG_CAEEL (P34475) Tubulin gamma chain (Gamma tubulin)| Length = 444 Score = 27.7 bits (60), Expect = 7.3 Identities = 16/33 (48%), Positives = 18/33 (54%) Frame = +2 Query: 173 RPPQAPLGRSPLRGAHGPVSRATRPQVTSSGLI 271 RPP L PLR H P+S RPQ SGL+ Sbjct: 345 RPPFYML--KPLRMMHAPLSPYVRPQYKVSGLL 375
>RD23A_HUMAN (P54725) UV excision repair protein RAD23 homolog A (hHR23A)| Length = 363 Score = 27.7 bits (60), Expect = 7.3 Identities = 13/43 (30%), Positives = 17/43 (39%) Frame = -3 Query: 290 DRLRRDRSTPTTSPVAASHATPGHAHHGGESDRVXXXXXXXAY 162 D+ + S PTTSP + S + P G E D Y Sbjct: 121 DKSPSEESAPTTSPESVSGSVPSSGSSGREEDAASTLVTGSEY 163
>DNAE2_SYMTH (Q67N73) Error-prone DNA polymerase (EC 2.7.7.7)| Length = 1085 Score = 27.7 bits (60), Expect = 7.3 Identities = 12/19 (63%), Positives = 12/19 (63%) Frame = +2 Query: 164 TPPRPPQAPLGRSPLRGAH 220 T PRPP A LGR RG H Sbjct: 1054 TDPRPPLAALGRVDRRGGH 1072
>BAT2_MOUSE (Q7TSC1) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2158 Score = 27.7 bits (60), Expect = 7.3 Identities = 15/36 (41%), Positives = 19/36 (52%) Frame = +2 Query: 155 HGRTPPRPPQAPLGRSPLRGAHGPVSRATRPQVTSS 262 H R P PPQAP G SP P +R P+ +S+ Sbjct: 1492 HPRPKPGPPQAPQGSSP-----RPPTRYDPPRASSA 1522
>NLTP1_ORYSA (P23096) Nonspecific lipid-transfer protein 1 precursor (LTP 1)| (PAPI) Length = 116 Score = 27.7 bits (60), Expect = 7.3 Identities = 13/27 (48%), Positives = 15/27 (55%), Gaps = 2/27 (7%) Frame = -2 Query: 255 VTCGRVARDTGPCA--PRRGERPSGAC 181 +TCG+V GPC R G PS AC Sbjct: 26 ITCGQVNSAVGPCLTYARGGAGPSAAC 52
>BAT2_HUMAN (P48634) Large proline-rich protein BAT2 (HLA-B-associated transcript| 2) Length = 2157 Score = 27.3 bits (59), Expect = 9.6 Identities = 18/38 (47%), Positives = 20/38 (52%) Frame = +2 Query: 155 HGRTPPRPPQAPLGRSPLRGAHGPVSRATRPQVTSSGL 268 H R P PPQAP G SP P +R PQ +SGL Sbjct: 1496 HPRHKPGPPQAPQGPSP-----RPPTR-YEPQRVNSGL 1527
>PHK_BRUME (Q8YBL8) Probable phosphoketolase (EC 4.1.2.-)| Length = 792 Score = 27.3 bits (59), Expect = 9.6 Identities = 14/30 (46%), Positives = 16/30 (53%) Frame = -3 Query: 290 DRLRRDRSTPTTSPVAASHATPGHAHHGGE 201 +RL R S P P A+ TPG H GGE Sbjct: 120 ERLFRQFSFPGGIPSHAAPETPGSIHEGGE 149
>NLTP2_LYCES (P27056) Nonspecific lipid-transfer protein 2 precursor (LTP 2)| Length = 114 Score = 27.3 bits (59), Expect = 9.6 Identities = 12/28 (42%), Positives = 15/28 (53%), Gaps = 1/28 (3%) Frame = -2 Query: 255 VTCGRVARDTGPCAP-RRGERPSGACGG 175 +TCG+V PC P +G P G C G Sbjct: 25 LTCGQVTAGLAPCLPYLQGRGPLGGCCG 52
>PHK_BRUSU (Q8FWR0) Probable phosphoketolase (EC 4.1.2.-)| Length = 789 Score = 27.3 bits (59), Expect = 9.6 Identities = 14/30 (46%), Positives = 16/30 (53%) Frame = -3 Query: 290 DRLRRDRSTPTTSPVAASHATPGHAHHGGE 201 +RL R S P P A+ TPG H GGE Sbjct: 117 ERLFRQFSFPGGIPSHAAPETPGSIHEGGE 146
>GOR_PANTR (P48778) Exonuclease GOR (EC 3.1.-.-) (Antigen GOR) (RNA| exonuclease 1 homolog-like) Length = 427 Score = 27.3 bits (59), Expect = 9.6 Identities = 10/25 (40%), Positives = 16/25 (64%) Frame = -2 Query: 240 VARDTGPCAPRRGERPSGACGGRGG 166 ++ ++ PC PRR + +GA GR G Sbjct: 328 ISPESSPCPPRRKAKETGAVDGRRG 352
>PTPA1_NEUCR (Q7S6M5) Serine/threonine-protein phosphatase 2A activator 1 (EC| 5.2.1.8) (Peptidyl-prolyl cis-trans isomerase PTPA-1) (PPIase PTPA-1) (Rotamase PTPA-1) (Phosphotyrosyl phosphatase activator 1) Length = 617 Score = 27.3 bits (59), Expect = 9.6 Identities = 12/28 (42%), Positives = 14/28 (50%) Frame = -2 Query: 201 ERPSGACGGRGGVRPWAQRAGRVVQGGL 118 ERPSG G G PWAQ + G+ Sbjct: 511 ERPSGPGGVTGTAAPWAQAPAQAPAAGI 538
>NLTP2_SORBI (Q43194) Nonspecific lipid-transfer protein 2 precursor (LTP 2)| Length = 122 Score = 27.3 bits (59), Expect = 9.6 Identities = 13/28 (46%), Positives = 16/28 (57%), Gaps = 3/28 (10%) Frame = -2 Query: 255 VTCGRVARDTGPC---APRRGERPSGAC 181 VTCG+V+ GPC A +G PS C Sbjct: 31 VTCGQVSSAIGPCLSYARGQGSGPSAGC 58
>NFAC4_HUMAN (Q14934) Nuclear factor of activated T-cells, cytoplasmic 4| (NF-ATc4) (NFATc4) (T cell transcription factor NFAT3) (NF-AT3) Length = 902 Score = 27.3 bits (59), Expect = 9.6 Identities = 14/34 (41%), Positives = 15/34 (44%) Frame = +2 Query: 158 GRTPPRPPQAPLGRSPLRGAHGPVSRATRPQVTS 259 G PP PP PL R P G+ GP P S Sbjct: 294 GSEPPPPPPLPLARDP--GSPGPFDYVGAPPAES 325
>SNTB2_HUMAN (Q13425) Beta-2-syntrophin (59 kDa dystrophin-associated protein| A1, basic component 2) (Syntrophin 3) (SNT3) (Syntrophin-like) (SNTL) Length = 540 Score = 27.3 bits (59), Expect = 9.6 Identities = 15/43 (34%), Positives = 19/43 (44%) Frame = +2 Query: 140 PAR*AHGRTPPRPPQAPLGRSPLRGAHGPVSRATRPQVTSSGL 268 P + G PP PP P G + GA PV R + + GL Sbjct: 84 PGSPSRGLGPPSPPAPPRGPAGEAGASPPVRRVRVVKQEAGGL 126 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.316 0.132 0.447 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 34,604,069 Number of Sequences: 219361 Number of extensions: 515101 Number of successful extensions: 2813 Number of sequences better than 10.0: 32 Number of HSP's better than 10.0 without gapping: 2443 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2796 length of database: 80,573,946 effective HSP length: 90 effective length of database: 60,831,456 effective search space used: 1459954944 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits)
