ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
Japanese | English
更新日：2016年5月1日

Clone Information

BLAST Search Result

Clone Name bastl42a04
Clone Library Name barley_pub
No. Definition Score
(bits)		 E
Value
1ref|XM_480099.1| Oryza sativa (japonica cultivar-group), mRNA 157 3e-35
2dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic D... 157 3e-35
3dbj|AP005740.3| Oryza sativa (japonica cultivar-group) genomic D... 157 3e-35
4ref|XM_467662.1| Oryza sativa (japonica cultivar-group), mRNA 42 1.2
5ref|NM_016889.2| Mus musculus insulinoma-associated 1 (Insm1), mRNA 42 1.2
6gb|BC082809.1| Mus musculus insulinoma-associated 1, mRNA (cDNA ... 42 1.2
7gb|BC051240.1| Mus musculus insulinoma-associated 1, mRNA (cDNA ... 42 1.2
8emb|AL935056.18| Mouse DNA sequence from clone RP23-185F7 on chr... 42 1.2
9dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
10dbj|AP004880.3| Oryza sativa (japonica cultivar-group) genomic D... 42 1.2
11dbj|AK120606.1| Oryza sativa (japonica cultivar-group) cDNA clon... 42 1.2
12gb|AF044669.1|AF044669 Mus musculus insulinoma-associated protei... 42 1.2
13dbj|AB026687.1| Physcomitrella patens mRNA for plastocyanin prec... 42 1.2
14gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence 40 4.6
15ref|XM_472838.1| Oryza sativa (japonica cultivar-group), predic... 40 4.6
16ref|XM_363909.1| Magnaporthe grisea 70-15 hypothetical protein (... 40 4.6
17gb|AY162833.1| Homo sapiens E2F transcription factor 5, p130-bin... 40 4.6
18ref|NM_012731.1| Rattus norvegicus neurotrophic tyrosine kinase,... 40 4.6
19gb|AY266346.1| Rattus norvegicus neurotrophic tyrosine kinase re... 40 4.6
20emb|Z78409.1|HSTFE2F5 H.sapiens mRNA for transcription factor E2F5 40 4.6
21emb|Y00284.1|ECGLOAP1 Horse pseudo alpha globin (psi alpha) gene 40 4.6
22emb|X86097.1|HSRNAE2F5 H.sapiens mRNA for E2F-5 protein 40 4.6
23emb|CR555306.1| Azoarcus sp. EbN1 complete genome 40 4.6
24emb|AL662952.6|OSJN00151 Oryza sativa genomic DNA, chromosome 4,... 40 4.6
25emb|AL606447.3|OSJN00011 Oryza sativa genomic DNA, chromosome 4,... 40 4.6
26emb|AJ250015.1|MAV250015 Mycobacterium avium insertion sequence ... 40 4.6
27gb|AC011773.9| Homo sapiens chromosome 8, clone RP11-219B4, comp... 40 4.6
28gb|AC113348.2| Homo sapiens chromosome 5 clone CTD-2537M22, comp... 40 4.6
29ref|NM_133104.2| Drosophila melanogaster CG7282-RA (CG7282), mRNA 40 4.6
30gb|AY058569.1| Drosophila melanogaster LD25641 full length cDNA 40 4.6
31gb|AC018490.6| Drosophila melanogaster, chromosome X, region 17E... 40 4.6
32gb|AF527957.1| Mycobacterium avium isolate locus 1 insertion seq... 40 4.6
33gb|AY265419.1| Rattus norvegicus truncated trkB receptor (TrkB) ... 40 4.6
34dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
35dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic D... 40 4.6
36ref|NM_001951.2| Homo sapiens E2F transcription factor 5, p130-b... 40 4.6
37dbj|BS000122.1| Pan troglodytes chromosome 22 clone:PTB-105K10, ... 40 4.6
38dbj|BS000153.1| Pan troglodytes chromosome 22 clone:RP43-069E18,... 40 4.6
39gb|AE003510.5| Drosophila melanogaster chromosome X, section 62 ... 40 4.6
40dbj|AP001893.5| Homo sapiens genomic DNA, chromosome 11 clone:RP... 40 4.6
41gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. ... 40 4.6
42gb|U15642.1|HSU15642 Human transcription factor E2F-5 mRNA, comp... 40 4.6
43gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome... 40 4.6
44emb|AL731744.6|CNS08C7T Oryza sativa chromosome 12, . BAC OSJNBa... 40 4.6
45emb|AL731756.4|CNS08C85 Oryza sativa chromosome 12, . BAC OJ1220... 40 4.6
46gb|U31556.1|HSU31556 Human transcription factor E2F-5 mRNA, comp... 40 4.6
47gb|M55292.1|RATTRKB2 Rat neural receptor protein-tyrosine kinase... 40 4.6
48gb|M55291.1|RATTRKB1 Rat neural receptor protein-tyrosine kinase... 40 4.6
49gb|AC165291.2| Mus musculus BAC clone RP23-330N2 from chromosome... 40 4.6 
>ref|XM_480099.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 2274

 Score =  157 bits (79), Expect = 3e-35
 Identities = 208/251 (82%)
 Strand = Plus / Plus

                                                                       
Query: 64  accatcacagccgcgtcgtcggcgccgctcccactgctcgcgcttctctctctcaagtcc 123
           ||||||||| |||||||||||||||||||||| ||||||||||| || || || | ||| 
Sbjct: 49  accatcacatccgcgtcgtcggcgccgctcccgctgctcgcgctgctgtcgctgaggtcg 108

                                                                       
Query: 124 tccctgaacgacccggccggcgcgctgagcccatggacgtacgccgccgcggcctccgca 183
           || |||  |||||| |||||||||||| |  | |||||||||||||| ||||| ||||| 
Sbjct: 109 tcgctgggcgaccccgccggcgcgctgcggtcgtggacgtacgccgcggcggcgtccgcg 168

                                                                       
Query: 184 ggcgccactcggtcgctctcccctccgtggtgcgcatggcccggtgtcgcgtgcgacgcg 243
           ||||||||  |||||||  | || ||||||||||| |||||||| || |||||||||| |
Sbjct: 169 ggcgccaccaggtcgctggcgccgccgtggtgcgcgtggcccggggtggcgtgcgacggg 228

                                                                       
Query: 244 gccacaggtgacgtcgtcggggttgatctgtctcgtcgcaacctatccggtaccgtctcc 303
           || || || || ||||||||||| || ||||| || || ||||| ||||| ||||| || 
Sbjct: 229 gcaaccggggaggtcgtcggggtcgacctgtcgcggcggaacctgtccggcaccgtgtcg 288

                      
Query: 304 cccacggccgc 314
           ||||| |||||
Sbjct: 289 cccaccgccgc 299
to top
>dbj|AP008214.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, complete
               sequence
          Length = 28434780

 Score =  157 bits (79), Expect = 3e-35
 Identities = 208/251 (82%)
 Strand = Plus / Plus

                                                                           
Query: 64      accatcacagccgcgtcgtcggcgccgctcccactgctcgcgcttctctctctcaagtcc 123
               ||||||||| |||||||||||||||||||||| ||||||||||| || || || | ||| 
Sbjct: 2764792 accatcacatccgcgtcgtcggcgccgctcccgctgctcgcgctgctgtcgctgaggtcg 2764851

                                                                           
Query: 124     tccctgaacgacccggccggcgcgctgagcccatggacgtacgccgccgcggcctccgca 183
               || |||  |||||| |||||||||||| |  | |||||||||||||| ||||| ||||| 
Sbjct: 2764852 tcgctgggcgaccccgccggcgcgctgcggtcgtggacgtacgccgcggcggcgtccgcg 2764911

                                                                           
Query: 184     ggcgccactcggtcgctctcccctccgtggtgcgcatggcccggtgtcgcgtgcgacgcg 243
               ||||||||  |||||||  | || ||||||||||| |||||||| || |||||||||| |
Sbjct: 2764912 ggcgccaccaggtcgctggcgccgccgtggtgcgcgtggcccggggtggcgtgcgacggg 2764971

                                                                           
Query: 244     gccacaggtgacgtcgtcggggttgatctgtctcgtcgcaacctatccggtaccgtctcc 303
               || || || || ||||||||||| || ||||| || || ||||| ||||| ||||| || 
Sbjct: 2764972 gcaaccggggaggtcgtcggggtcgacctgtcgcggcggaacctgtccggcaccgtgtcg 2765031

                          
Query: 304     cccacggccgc 314
               ||||| |||||
Sbjct: 2765032 cccaccgccgc 2765042
to top
>dbj|AP005740.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 8, PAC
             clone:P0015A04
          Length = 152058

 Score =  157 bits (79), Expect = 3e-35
 Identities = 208/251 (82%)
 Strand = Plus / Plus

                                                                         
Query: 64    accatcacagccgcgtcgtcggcgccgctcccactgctcgcgcttctctctctcaagtcc 123
             ||||||||| |||||||||||||||||||||| ||||||||||| || || || | ||| 
Sbjct: 27941 accatcacatccgcgtcgtcggcgccgctcccgctgctcgcgctgctgtcgctgaggtcg 28000

                                                                         
Query: 124   tccctgaacgacccggccggcgcgctgagcccatggacgtacgccgccgcggcctccgca 183
             || |||  |||||| |||||||||||| |  | |||||||||||||| ||||| ||||| 
Sbjct: 28001 tcgctgggcgaccccgccggcgcgctgcggtcgtggacgtacgccgcggcggcgtccgcg 28060

                                                                         
Query: 184   ggcgccactcggtcgctctcccctccgtggtgcgcatggcccggtgtcgcgtgcgacgcg 243
             ||||||||  |||||||  | || ||||||||||| |||||||| || |||||||||| |
Sbjct: 28061 ggcgccaccaggtcgctggcgccgccgtggtgcgcgtggcccggggtggcgtgcgacggg 28120

                                                                         
Query: 244   gccacaggtgacgtcgtcggggttgatctgtctcgtcgcaacctatccggtaccgtctcc 303
             || || || || ||||||||||| || ||||| || || ||||| ||||| ||||| || 
Sbjct: 28121 gcaaccggggaggtcgtcggggtcgacctgtcgcggcggaacctgtccggcaccgtgtcg 28180

                        
Query: 304   cccacggccgc 314
             ||||| |||||
Sbjct: 28181 cccaccgccgc 28191
to top
>ref|XM_467662.1| Oryza sativa (japonica cultivar-group),  mRNA
          Length = 1702

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 165 cgccgccgcggcctccgcaggcgcc 189
           |||||||||||||| ||||||||||
Sbjct: 262 cgccgccgcggcctgcgcaggcgcc 286
to top
>ref|NM_016889.2| Mus musculus insulinoma-associated 1 (Insm1), mRNA
          Length = 2927

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 303 ccccacggccgccgcgctgctcgca 327
           ||||||| |||||||||||||||||
Sbjct: 554 ccccacgcccgccgcgctgctcgca 578
to top
>gb|BC082809.1| Mus musculus insulinoma-associated 1, mRNA (cDNA clone MGC:90675
           IMAGE:5720418), complete cds
          Length = 2927

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 303 ccccacggccgccgcgctgctcgca 327
           ||||||| |||||||||||||||||
Sbjct: 554 ccccacgcccgccgcgctgctcgca 578
to top
>gb|BC051240.1| Mus musculus insulinoma-associated 1, mRNA (cDNA clone
           IMAGE:6469481), containing frame-shift errors
          Length = 3095

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 303 ccccacggccgccgcgctgctcgca 327
           ||||||| |||||||||||||||||
Sbjct: 744 ccccacgcccgccgcgctgctcgca 768
to top
>emb|AL935056.18| Mouse DNA sequence from clone RP23-185F7 on chromosome 2, complete
             sequence
          Length = 146086

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 303   ccccacggccgccgcgctgctcgca 327
             ||||||| |||||||||||||||||
Sbjct: 43187 ccccacgcccgccgcgctgctcgca 43211
to top
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete
                sequence
          Length = 35954743

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                         
Query: 165      cgccgccgcggcctccgcaggcgcc 189
                |||||||||||||| ||||||||||
Sbjct: 30687969 cgccgccgcggcctgcgcaggcgcc 30687993
to top
>dbj|AP004880.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, PAC
             clone:P0487D09
          Length = 161531

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                      
Query: 165   cgccgccgcggcctccgcaggcgcc 189
             |||||||||||||| ||||||||||
Sbjct: 28116 cgccgccgcggcctgcgcaggcgcc 28140
to top
>dbj|AK120606.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013151A19, full
           insert sequence
          Length = 1702

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 165 cgccgccgcggcctccgcaggcgcc 189
           |||||||||||||| ||||||||||
Sbjct: 262 cgccgccgcggcctgcgcaggcgcc 286
to top
>gb|AF044669.1|AF044669 Mus musculus insulinoma-associated protein (IA-1) mRNA, complete
           cds
          Length = 2548

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 24/25 (96%)
 Strand = Plus / Plus

                                    
Query: 303 ccccacggccgccgcgctgctcgca 327
           ||||||| |||||||||||||||||
Sbjct: 572 ccccacgcccgccgcgctgctcgca 596
to top
>dbj|AB026687.1| Physcomitrella patens mRNA for plastocyanin precursor, complete cds
          Length = 816

 Score = 42.1 bits (21), Expect = 1.2
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 205 cctccgtggtgcgcatggccc 225
           |||||||||||||||||||||
Sbjct: 161 cctccgtggtgcgcatggccc 181
to top
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence
          Length = 3694126

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                  
Query: 134    acccggccggcgcgctgagc 153
              ||||||||||||||||||||
Sbjct: 864335 acccggccggcgcgctgagc 864354
to top
>ref|XM_472838.1| Oryza sativa (japonica cultivar-group),  predicted mRNA
          Length = 2622

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 120 gtcctccctgaacgacccggccgg 143
           ||||||||||||||||||| ||||
Sbjct: 144 gtcctccctgaacgacccgtccgg 167
to top
>ref|XM_363909.1| Magnaporthe grisea 70-15 hypothetical protein (MG01835.4) partial
            mRNA
          Length = 4137

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 99   gctcgcgcttctctctctca 118
            ||||||||||||||||||||
Sbjct: 2266 gctcgcgcttctctctctca 2247
to top
>gb|AY162833.1| Homo sapiens E2F transcription factor 5, p130-binding (E2F5) gene,
           complete cds
          Length = 38504

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 165 cgccgccgcggcctccgcaggcgc 188
           ||||||||| ||||||||||||||
Sbjct: 384 cgccgccgcagcctccgcaggcgc 407
to top
>ref|NM_012731.1| Rattus norvegicus neurotrophic tyrosine kinase, receptor, type 2
           (Ntrk2), mRNA
          Length = 4757

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 182 caggcgccactcggtcgctctccc 205
           ||||||||||||||| ||||||||
Sbjct: 409 caggcgccactcggtggctctccc 386
to top
>gb|AY266346.1| Rattus norvegicus neurotrophic tyrosine kinase receptor type 2
            (Ntrk2) gene, partial cds
          Length = 4344

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                    
Query: 182  caggcgccactcggtcgctctccc 205
            ||||||||||||||| ||||||||
Sbjct: 3637 caggcgccactcggtggctctccc 3614
to top
>emb|Z78409.1|HSTFE2F5 H.sapiens mRNA for transcription factor E2F5
          Length = 1697

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 165 cgccgccgcggcctccgcaggcgc 188
           ||||||||| ||||||||||||||
Sbjct: 102 cgccgccgcagcctccgcaggcgc 125
to top
>emb|Y00284.1|ECGLOAP1 Horse pseudo alpha globin (psi alpha) gene
          Length = 1141

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 170 ccgcggcctccgcaggcgccactc 193
           ||||||||||||| ||||||||||
Sbjct: 222 ccgcggcctccgcgggcgccactc 199
to top
>emb|X86097.1|HSRNAE2F5 H.sapiens mRNA for E2F-5 protein
          Length = 1748

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 165 cgccgccgcggcctccgcaggcgc 188
           ||||||||| ||||||||||||||
Sbjct: 98  cgccgccgcagcctccgcaggcgc 121
to top
>emb|CR555306.1| Azoarcus sp. EbN1 complete genome
          Length = 4296230

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 250     ggtgacgtcgtcggggttga 269
               ||||||||||||||||||||
Sbjct: 2261444 ggtgacgtcgtcggggttga 2261463



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 222    gcccggtgtcgcgtgcgacg 241
              ||||||||||||||||||||
Sbjct: 471906 gcccggtgtcgcgtgcgacg 471887
to top
>emb|AL662952.6|OSJN00151 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBa0009P12,
             complete sequence
          Length = 179644

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 74    ccgcgtcgtcggcgccgctcccac 97
             |||| |||||||||||||||||||
Sbjct: 65221 ccgcatcgtcggcgccgctcccac 65198
to top
>emb|AL606447.3|OSJN00011 Oryza sativa genomic DNA, chromosome 4, BAC clone: OSJNBb0022F23,
             complete sequence
          Length = 130273

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 120   gtcctccctgaacgacccggccgg 143
             ||||||||||||||||||| ||||
Sbjct: 44889 gtcctccctgaacgacccgtccgg 44912
to top
>emb|AJ250015.1|MAV250015 Mycobacterium avium insertion sequence IS900, subsp.
           paratuberculosis
          Length = 2350

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                               
Query: 229 gtcgcgtgcgacgcggccac 248
           ||||||||||||||||||||
Sbjct: 568 gtcgcgtgcgacgcggccac 587
to top
>gb|AC011773.9| Homo sapiens chromosome 8, clone RP11-219B4, complete sequence
          Length = 160283

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 165   cgccgccgcggcctccgcaggcgc 188
             ||||||||| ||||||||||||||
Sbjct: 79926 cgccgccgcagcctccgcaggcgc 79949
to top
>gb|AC113348.2| Homo sapiens chromosome 5 clone CTD-2537M22, complete sequence
          Length = 80723

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                     
Query: 106   cttctctctctcaagtcctccctg 129
             ||||||||||||| ||||||||||
Sbjct: 72973 cttctctctctcaggtcctccctg 72996
to top
>ref|NM_133104.2| Drosophila melanogaster CG7282-RA (CG7282), mRNA
          Length = 5857

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 83   cggcgccgctcccactgctc 102
            ||||||||||||||||||||
Sbjct: 4443 cggcgccgctcccactgctc 4424
to top
>gb|AY058569.1| Drosophila melanogaster LD25641 full length cDNA
          Length = 4905

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 83   cggcgccgctcccactgctc 102
            ||||||||||||||||||||
Sbjct: 3464 cggcgccgctcccactgctc 3445
to top
>gb|AC018490.6| Drosophila melanogaster, chromosome X, region 17E-17F, BAC clone
             BACR25O02, complete sequence
          Length = 165098

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 83    cggcgccgctcccactgctc 102
             ||||||||||||||||||||
Sbjct: 61080 cggcgccgctcccactgctc 61061
to top
>gb|AF527957.1| Mycobacterium avium isolate locus 1 insertion sequence IS901 putative
            transport protein and IS901 protein genes, complete cds
          Length = 2107

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 229  gtcgcgtgcgacgcggccac 248
            ||||||||||||||||||||
Sbjct: 1997 gtcgcgtgcgacgcggccac 2016
to top
>gb|AY265419.1| Rattus norvegicus truncated trkB receptor (TrkB) mRNA, complete cds
          Length = 3960

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 182 caggcgccactcggtcgctctccc 205
           ||||||||||||||| ||||||||
Sbjct: 186 caggcgccactcggtggctctccc 163
to top
>dbj|AP008210.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 4, complete
                sequence
          Length = 35498469

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                        
Query: 74       ccgcgtcgtcggcgccgctcccac 97
                |||| |||||||||||||||||||
Sbjct: 29928469 ccgcatcgtcggcgccgctcccac 29928446



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                        
Query: 120      gtcctccctgaacgacccggccgg 143
                ||||||||||||||||||| ||||
Sbjct: 23602208 gtcctccctgaacgacccgtccgg 23602231
to top
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete
               sequence
          Length = 27566993

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 99      gctcgcgcttctctctctca 118
               ||||||||||||||||||||
Sbjct: 9411924 gctcgcgcttctctctctca 9411943



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 98      tgctcgcgcttctctctctc 117
               ||||||||||||||||||||
Sbjct: 7502434 tgctcgcgcttctctctctc 7502415
to top
>ref|NM_001951.2| Homo sapiens E2F transcription factor 5, p130-binding (E2F5), mRNA
          Length = 1752

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 165 cgccgccgcggcctccgcaggcgc 188
           ||||||||| ||||||||||||||
Sbjct: 102 cgccgccgcagcctccgcaggcgc 125
to top
>dbj|BS000122.1| Pan troglodytes chromosome 22 clone:PTB-105K10, map 22, complete
             sequences
          Length = 82010

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                 
Query: 47    ttgtgctcccgctcctcacc 66
             ||||||||||||||||||||
Sbjct: 14249 ttgtgctcccgctcctcacc 14268
to top
>dbj|BS000153.1| Pan troglodytes chromosome 22 clone:RP43-069E18, map 22, complete
            sequences
          Length = 194937

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                
Query: 47   ttgtgctcccgctcctcacc 66
            ||||||||||||||||||||
Sbjct: 7568 ttgtgctcccgctcctcacc 7587
to top
>gb|AE003510.5| Drosophila melanogaster chromosome X, section 62 of 74 of the complete
             sequence
          Length = 297236

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 83    cggcgccgctcccactgctc 102
             ||||||||||||||||||||
Sbjct: 96307 cggcgccgctcccactgctc 96288
to top
>dbj|AP001893.5| Homo sapiens genomic DNA, chromosome 11 clone:RP11-50B3, complete
              sequence
          Length = 157702

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 34     catggcctcctgcttgtgct 53
              ||||||||||||||||||||
Sbjct: 133213 catggcctcctgcttgtgct 133194
to top
>gb|AE016958.1| Mycobacterium avium subsp. paratuberculosis str. k10, complete genome
          Length = 4829781

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                  
Query: 229    gtcgcgtgcgacgcggccac 248
              ||||||||||||||||||||
Sbjct: 163110 gtcgcgtgcgacgcggccac 163091
to top
>gb|U15642.1|HSU15642 Human transcription factor E2F-5 mRNA, complete cds
          Length = 1587

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 165 cgccgccgcggcctccgcaggcgc 188
           ||||||||| ||||||||||||||
Sbjct: 271 cgccgccgcagcctccgcaggcgc 294
to top
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence
          Length = 27492551

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Plus

                                   
Query: 99      gctcgcgcttctctctctca 118
               ||||||||||||||||||||
Sbjct: 9411809 gctcgcgcttctctctctca 9411828



 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                   
Query: 98      tgctcgcgcttctctctctc 117
               ||||||||||||||||||||
Sbjct: 7502313 tgctcgcgcttctctctctc 7502294
to top
>emb|AL731744.6|CNS08C7T Oryza sativa chromosome 12, . BAC OSJNBa0026C14 of library OSJNBa from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 190718

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 99    gctcgcgcttctctctctca 118
             ||||||||||||||||||||
Sbjct: 27131 gctcgcgcttctctctctca 27112
to top
>emb|AL731756.4|CNS08C85 Oryza sativa chromosome 12, . BAC OJ1220_D01 of library Monsanto from
             chromosome 12 of cultivar Nipponbare of ssp. japonica of
             Oryza sativa (rice), complete sequence
          Length = 98782

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                 
Query: 98    tgctcgcgcttctctctctc 117
             ||||||||||||||||||||
Sbjct: 92110 tgctcgcgcttctctctctc 92091
to top
>gb|U31556.1|HSU31556 Human transcription factor E2F-5 mRNA, complete cds
          Length = 1739

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                   
Query: 165 cgccgccgcggcctccgcaggcgc 188
           ||||||||| ||||||||||||||
Sbjct: 106 cgccgccgcagcctccgcaggcgc 129
to top
>gb|M55292.1|RATTRKB2 Rat neural receptor protein-tyrosine kinase (trkB) mRNA, complete
           cds
          Length = 2249

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 182 caggcgccactcggtcgctctccc 205
           ||||||||||||||| ||||||||
Sbjct: 186 caggcgccactcggtggctctccc 163
to top
>gb|M55291.1|RATTRKB1 Rat neural receptor protein-tyrosine kinase (trkB) mRNA, complete
           cds
          Length = 4757

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                   
Query: 182 caggcgccactcggtcgctctccc 205
           ||||||||||||||| ||||||||
Sbjct: 409 caggcgccactcggtggctctccc 386
to top
>gb|AC165291.2| Mus musculus BAC clone RP23-330N2 from chromosome 17, complete sequence
          Length = 206353

 Score = 40.1 bits (20), Expect = 4.6
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 106    cttctctctctcaagtcctccctg 129
              |||||||||||| |||||||||||
Sbjct: 127793 cttctctctctctagtcctccctg 127816


  Database: nt
    Posted date:  May 29, 2006 11:10 AM
  Number of letters in database: 3,984,495,279
  Number of sequences in database:  917,343
  
  Database: /shigen/export/home/twatanab/db/nt/nt.01
    Posted date:  May 29, 2006 11:16 AM
  Number of letters in database: 3,988,174,986
  Number of sequences in database:  835,257
  
  Database: /shigen/export/home/twatanab/db/nt/nt.02
    Posted date:  May 29, 2006 11:21 AM
  Number of letters in database: 3,991,246,324
  Number of sequences in database:  771,481
  
  Database: /shigen/export/home/twatanab/db/nt/nt.03
    Posted date:  May 29, 2006 11:27 AM
  Number of letters in database: 3,990,718,311
  Number of sequences in database:  977,174
  
  Database: /shigen/export/home/twatanab/db/nt/nt.04
    Posted date:  May 29, 2006 11:29 AM
  Number of letters in database: 1,278,410,368
  Number of sequences in database:  400,813
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 2,528,741
Number of Sequences: 3902068
Number of extensions: 2528741
Number of successful extensions: 58875
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 58056
Number of HSP's gapped (non-prelim): 816
length of query: 346
length of database: 17,233,045,268
effective HSP length: 22
effective length of query: 324
effective length of database: 17,147,199,772
effective search space: 5555692726128
effective search space used: 5555692726128
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 20 (40.1 bits)
to top