ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl41h12 |
|---|---|
| Clone Library Name | barley_pub |
>ref|XM_367902.1| Magnaporthe grisea 70-15 chromosome III hypothetical protein (MG07806.4) partial mRNA Length = 1401 Score = 54.0 bits (27), Expect = 3e-04 Identities = 27/27 (100%) Strand = Plus / Plus Query: 160 cgccgccggcgcgacgaccacgacgag 186 ||||||||||||||||||||||||||| Sbjct: 1011 cgccgccggcgcgacgaccacgacgag 1037
>gb|AF329639.1|AF329639 Drosophila virilis hairy 5' cis-regulatory region sequence Length = 7119 Score = 46.1 bits (23), Expect = 0.062 Identities = 23/23 (100%) Strand = Plus / Plus Query: 163 cgccggcgcgacgaccacgacga 185 ||||||||||||||||||||||| Sbjct: 5769 cgccggcgcgacgaccacgacga 5791
>gb|AC100927.11| Mus musculus chromosome 3, clone RP23-72A21, complete sequence Length = 196709 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Minus Query: 238 gacgaggcgggggacgacgacg 259 |||||||||||||||||||||| Sbjct: 172284 gacgaggcgggggacgacgacg 172263
>gb|AE017180.1| Geobacter sulfurreducens PCA, complete genome Length = 3814139 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Plus Query: 171 cgacgaccacgacgagagcgtc 192 |||||||||||||||||||||| Sbjct: 256516 cgacgaccacgacgagagcgtc 256537
>gb|AC130718.3| Mus musculus BAC clone RP23-467A8 from chromosome 18, complete sequence Length = 178023 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Minus Query: 262 gagtttgcctccgatgaagacg 283 |||||||||||||||||||||| Sbjct: 131357 gagtttgcctccgatgaagacg 131336
>gb|BC019935.1| Mus musculus regulatory factor X-associated protein, mRNA (cDNA clone MGC:32426 IMAGE:5041039), complete cds Length = 1060 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Plus Query: 238 gacgaggcgggggacgacgacg 259 |||||||||||||||||||||| Sbjct: 239 gacgaggcgggggacgacgacg 260
>dbj|AK144633.1| Mus musculus lung RCB-0558 LLC cDNA, RIKEN full-length enriched library, clone:G730015B16 product:regulatory factor X-associated protein, full insert sequence Length = 1069 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Plus Query: 238 gacgaggcgggggacgacgacg 259 |||||||||||||||||||||| Sbjct: 263 gacgaggcgggggacgacgacg 284
>gb|AF335512.1|AF335512 Mus musculus regulatory factor X-associated protein (Rfxap) mRNA, complete cds Length = 1064 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Plus Query: 238 gacgaggcgggggacgacgacg 259 |||||||||||||||||||||| Sbjct: 256 gacgaggcgggggacgacgacg 277
>dbj|AK077640.1| Mus musculus 8 days embryo whole body cDNA, RIKEN full-length enriched library, clone:5730495K23 product:REGULATORY FACTOR X-ASSOCIATED PROTEIN homolog [Mus musculus], full insert sequence Length = 1077 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Plus Query: 238 gacgaggcgggggacgacgacg 259 |||||||||||||||||||||| Sbjct: 274 gacgaggcgggggacgacgacg 295
>dbj|AK087489.1| Mus musculus 0 day neonate eyeball cDNA, RIKEN full-length enriched library, clone:E130305I03 product:REGULATORY FACTOR X-ASSOCIATED PROTEIN homolog [Mus musculus], full insert sequence Length = 2155 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Plus Query: 238 gacgaggcgggggacgacgacg 259 |||||||||||||||||||||| Sbjct: 277 gacgaggcgggggacgacgacg 298
>gb|AC142452.5| Mus musculus BAC clone RP24-266E20 from 3, complete sequence Length = 149936 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Minus Query: 238 gacgaggcgggggacgacgacg 259 |||||||||||||||||||||| Sbjct: 16811 gacgaggcgggggacgacgacg 16790
>gb|BC047123.1| Mus musculus regulatory factor X-associated protein, mRNA (cDNA clone IMAGE:5028485) Length = 1060 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Plus Query: 238 gacgaggcgggggacgacgacg 259 |||||||||||||||||||||| Sbjct: 239 gacgaggcgggggacgacgacg 260
>ref|NM_133231.1| Mus musculus regulatory factor X-associated protein (Rfxap), mRNA Length = 1064 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Plus Query: 238 gacgaggcgggggacgacgacg 259 |||||||||||||||||||||| Sbjct: 256 gacgaggcgggggacgacgacg 277
>dbj|AB030193.1| Mus musculus mRNA, partial sequence, clone:2-29 Length = 529 Score = 44.1 bits (22), Expect = 0.24 Identities = 22/22 (100%) Strand = Plus / Plus Query: 238 gacgaggcgggggacgacgacg 259 |||||||||||||||||||||| Sbjct: 275 gacgaggcgggggacgacgacg 296
>ref|NM_196727.1| Oryza sativa (japonica cultivar-group) putative phosphate transporter (OSJNBb0015F09b.2), mRNA Length = 1692 Score = 42.1 bits (21), Expect = 0.96 Identities = 24/25 (96%) Strand = Plus / Plus Query: 240 cgaggcgggggacgacgacgacgag 264 |||||||| |||||||||||||||| Sbjct: 1620 cgaggcggaggacgacgacgacgag 1644
>ref|NM_183759.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1644 Score = 42.1 bits (21), Expect = 0.96 Identities = 21/21 (100%) Strand = Plus / Plus Query: 244 gcgggggacgacgacgacgag 264 ||||||||||||||||||||| Sbjct: 1147 gcgggggacgacgacgacgag 1167
>ref|XM_477463.1| Oryza sativa (japonica cultivar-group), mRNA Length = 705 Score = 42.1 bits (21), Expect = 0.96 Identities = 21/21 (100%) Strand = Plus / Plus Query: 244 gcgggggacgacgacgacgag 264 ||||||||||||||||||||| Sbjct: 304 gcgggggacgacgacgacgag 324
>gb|AC092710.6| Mus musculus chromosome 13, clone RP23-5A19, complete sequence Length = 268129 Score = 42.1 bits (21), Expect = 0.96 Identities = 21/21 (100%) Strand = Plus / Plus Query: 51 ccaccccacacccaccccacc 71 ||||||||||||||||||||| Sbjct: 204412 ccaccccacacccaccccacc 204432
>gb|AC016814.14| Mus musculus chromosome 1, clone RP23-2M16, complete sequence Length = 247961 Score = 42.1 bits (21), Expect = 0.96 Identities = 21/21 (100%) Strand = Plus / Minus Query: 243 ggcgggggacgacgacgacga 263 ||||||||||||||||||||| Sbjct: 116151 ggcgggggacgacgacgacga 116131
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 42.1 bits (21), Expect = 0.96 Identities = 21/21 (100%) Strand = Plus / Plus Query: 243 ggcgggggacgacgacgacga 263 ||||||||||||||||||||| Sbjct: 7490020 ggcgggggacgacgacgacga 7490040
>gb|AC161249.2| Mus musculus BAC clone RP24-541G2 from chromosome 13, complete sequence Length = 162934 Score = 42.1 bits (21), Expect = 0.96 Identities = 21/21 (100%) Strand = Plus / Plus Query: 51 ccaccccacacccaccccacc 71 ||||||||||||||||||||| Sbjct: 5894 ccaccccacacccaccccacc 5914
>gb|AC134923.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBb0030I07, complete sequence Length = 122733 Score = 42.1 bits (21), Expect = 0.96 Identities = 21/21 (100%) Strand = Plus / Minus Query: 155 gtcgtcgccgccggcgcgacg 175 ||||||||||||||||||||| Sbjct: 40113 gtcgtcgccgccggcgcgacg 40093
>gb|AC123795.4| Mus musculus BAC clone RP24-317K11 from chromosome 5, complete sequence Length = 188616 Score = 42.1 bits (21), Expect = 0.96 Identities = 21/21 (100%) Strand = Plus / Minus Query: 49 acccaccccacacccacccca 69 ||||||||||||||||||||| Sbjct: 172304 acccaccccacacccacccca 172284
>gb|AC093686.6| Homo sapiens BAC clone RP11-713A20 from 7, complete sequence Length = 189854 Score = 42.1 bits (21), Expect = 0.96 Identities = 21/21 (100%) Strand = Plus / Plus Query: 51 ccaccccacacccaccccacc 71 ||||||||||||||||||||| Sbjct: 151231 ccaccccacacccaccccacc 151251
>gb|AC093627.4| Homo sapiens BAC clone RP11-90P13 from 7, complete sequence Length = 179269 Score = 42.1 bits (21), Expect = 0.96 Identities = 21/21 (100%) Strand = Plus / Plus Query: 51 ccaccccacacccaccccacc 71 ||||||||||||||||||||| Sbjct: 140678 ccaccccacacccaccccacc 140698
>gb|AC093666.4| Homo sapiens BAC clone RP11-482G13 from 7, complete sequence Length = 157816 Score = 42.1 bits (21), Expect = 0.96 Identities = 21/21 (100%) Strand = Plus / Plus Query: 51 ccaccccacacccaccccacc 71 ||||||||||||||||||||| Sbjct: 153281 ccaccccacacccaccccacc 153301
>gb|AF536968.1| Oryza sativa (japonica cultivar-group) putative phosphate transporter OsPT8 gene, complete cds Length = 2600 Score = 42.1 bits (21), Expect = 0.96 Identities = 24/25 (96%) Strand = Plus / Plus Query: 240 cgaggcgggggacgacgacgacgag 264 |||||||| |||||||||||||||| Sbjct: 1554 cgaggcggaggacgacgacgacgag 1578
>gb|AC135643.2| Oryza sativa (japonica cultivar-group) chromosome 11 BAC clone OSJNBa0023F01, complete sequence Length = 145009 Score = 42.1 bits (21), Expect = 0.96 Identities = 21/21 (100%) Strand = Plus / Plus Query: 155 gtcgtcgccgccggcgcgacg 175 ||||||||||||||||||||| Sbjct: 11865 gtcgtcgccgccggcgcgacg 11885
>emb|AJ416557.1|CRE416557 Chlamydomonas reinhardtii mRNA for putative blue light receptor (putative blue light receptor gene) Length = 3959 Score = 42.1 bits (21), Expect = 0.96 Identities = 21/21 (100%) Strand = Plus / Minus Query: 51 ccaccccacacccaccccacc 71 ||||||||||||||||||||| Sbjct: 2782 ccaccccacacccaccccacc 2762
>emb|BX324134.11| Zebrafish DNA sequence from clone DKEY-103K8 in linkage group 6, complete sequence Length = 219514 Score = 42.1 bits (21), Expect = 0.96 Identities = 21/21 (100%) Strand = Plus / Plus Query: 72 tctcgcgcttcctctgtctct 92 ||||||||||||||||||||| Sbjct: 95058 tctcgcgcttcctctgtctct 95078
>gb|AC073391.3| Oryza sativa (japonica cultivar-group) chromosome 10 clone nbeb0015F09b, complete sequence Length = 108964 Score = 42.1 bits (21), Expect = 0.96 Identities = 24/25 (96%) Strand = Plus / Minus Query: 240 cgaggcgggggacgacgacgacgag 264 |||||||| |||||||||||||||| Sbjct: 105659 cgaggcggaggacgacgacgacgag 105635
>tpg|BK000941.1| TPA: TPA_inf: Oryza sativa transposon Rim2-M333, complete sequence Length = 14620 Score = 42.1 bits (21), Expect = 0.96 Identities = 21/21 (100%) Strand = Plus / Plus Query: 244 gcgggggacgacgacgacgag 264 ||||||||||||||||||||| Sbjct: 10736 gcgggggacgacgacgacgag 10756
>dbj|AP008217.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 11, complete sequence Length = 28386948 Score = 42.1 bits (21), Expect = 0.96 Identities = 21/21 (100%) Strand = Plus / Minus Query: 155 gtcgtcgccgccggcgcgacg 175 ||||||||||||||||||||| Sbjct: 26577855 gtcgtcgccgccggcgcgacg 26577835
>dbj|AP008216.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 10, complete sequence Length = 22685906 Score = 42.1 bits (21), Expect = 0.96 Identities = 24/25 (96%) Strand = Plus / Minus Query: 240 cgaggcgggggacgacgacgacgag 264 |||||||| |||||||||||||||| Sbjct: 15522313 cgaggcggaggacgacgacgacgag 15522289
>dbj|AP008213.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, complete sequence Length = 29644043 Score = 42.1 bits (21), Expect = 0.96 Identities = 21/21 (100%) Strand = Plus / Plus Query: 209 ccgactccgacttcgtcgccg 229 ||||||||||||||||||||| Sbjct: 19485416 ccgactccgacttcgtcgccg 19485436 Score = 42.1 bits (21), Expect = 0.96 Identities = 21/21 (100%) Strand = Plus / Plus Query: 244 gcgggggacgacgacgacgag 264 ||||||||||||||||||||| Sbjct: 10666705 gcgggggacgacgacgacgag 10666725
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 42.1 bits (21), Expect = 0.96 Identities = 21/21 (100%) Strand = Plus / Plus Query: 243 ggcgggggacgacgacgacga 263 ||||||||||||||||||||| Sbjct: 7487855 ggcgggggacgacgacgacga 7487875
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 42.1 bits (21), Expect = 0.96 Identities = 21/21 (100%) Strand = Plus / Plus Query: 244 gcgggggacgacgacgacgag 264 ||||||||||||||||||||| Sbjct: 12075658 gcgggggacgacgacgacgag 12075678 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 ggggacgacgacgacgagtt 266 |||||||||||||||||||| Sbjct: 40208686 ggggacgacgacgacgagtt 40208705
>gb|AC025907.2|AC025907 Oryza sativa (japonica cultivar-group) chromosome 10 clone nbxb0094K20, complete sequence Length = 193119 Score = 42.1 bits (21), Expect = 0.96 Identities = 24/25 (96%) Strand = Plus / Minus Query: 240 cgaggcgggggacgacgacgacgag 264 |||||||| |||||||||||||||| Sbjct: 9679 cgaggcggaggacgacgacgacgag 9655
>gb|AC115978.23| Mus musculus chromosome 14, clone RP24-83J8, complete sequence Length = 200865 Score = 42.1 bits (21), Expect = 0.96 Identities = 21/21 (100%) Strand = Plus / Minus Query: 51 ccaccccacacccaccccacc 71 ||||||||||||||||||||| Sbjct: 57294 ccaccccacacccaccccacc 57274
>gb|AC134239.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBb0042A11, complete sequence Length = 113049 Score = 42.1 bits (21), Expect = 0.96 Identities = 21/21 (100%) Strand = Plus / Plus Query: 243 ggcgggggacgacgacgacga 263 ||||||||||||||||||||| Sbjct: 18916 ggcgggggacgacgacgacga 18936
>dbj|AP005189.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0474B11 Length = 141702 Score = 42.1 bits (21), Expect = 0.96 Identities = 21/21 (100%) Strand = Plus / Plus Query: 244 gcgggggacgacgacgacgag 264 ||||||||||||||||||||| Sbjct: 109369 gcgggggacgacgacgacgag 109389
>dbj|AP003414.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1153F04 Length = 158174 Score = 42.1 bits (21), Expect = 0.96 Identities = 21/21 (100%) Strand = Plus / Plus Query: 244 gcgggggacgacgacgacgag 264 ||||||||||||||||||||| Sbjct: 42598 gcgggggacgacgacgacgag 42618
>dbj|AP003921.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0028G04 Length = 159761 Score = 42.1 bits (21), Expect = 0.96 Identities = 21/21 (100%) Strand = Plus / Plus Query: 244 gcgggggacgacgacgacgag 264 ||||||||||||||||||||| Sbjct: 121322 gcgggggacgacgacgacgag 121342
>dbj|AP005196.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 7, PAC clone:P0580A11 Length = 174673 Score = 42.1 bits (21), Expect = 0.96 Identities = 21/21 (100%) Strand = Plus / Plus Query: 209 ccgactccgacttcgtcgccg 229 ||||||||||||||||||||| Sbjct: 28760 ccgactccgacttcgtcgccg 28780
>emb|AJ416556.1|CRE416556 Chlamydomonas reinhardtii phot gene for putative blue light receptor, exons 1-13 Length = 10656 Score = 42.1 bits (21), Expect = 0.96 Identities = 21/21 (100%) Strand = Plus / Minus Query: 51 ccaccccacacccaccccacc 71 ||||||||||||||||||||| Sbjct: 8649 ccaccccacacccaccccacc 8629
>dbj|AK101170.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033028K24, full insert sequence Length = 2078 Score = 42.1 bits (21), Expect = 0.96 Identities = 24/25 (96%) Strand = Plus / Plus Query: 240 cgaggcgggggacgacgacgacgag 264 |||||||| |||||||||||||||| Sbjct: 1755 cgaggcggaggacgacgacgacgag 1779
>dbj|AK069304.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023010M20, full insert sequence Length = 1003 Score = 42.1 bits (21), Expect = 0.96 Identities = 21/21 (100%) Strand = Plus / Plus Query: 243 ggcgggggacgacgacgacga 263 ||||||||||||||||||||| Sbjct: 121 ggcgggggacgacgacgacga 141
>dbj|AK069054.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023004G17, full insert sequence Length = 2321 Score = 42.1 bits (21), Expect = 0.96 Identities = 24/25 (96%) Strand = Plus / Plus Query: 240 cgaggcgggggacgacgacgacgag 264 |||||||| |||||||||||||||| Sbjct: 1630 cgaggcggaggacgacgacgacgag 1654
>dbj|AK065146.1| Oryza sativa (japonica cultivar-group) cDNA clone:J013002A22, full insert sequence Length = 1726 Score = 42.1 bits (21), Expect = 0.96 Identities = 21/21 (100%) Strand = Plus / Minus Query: 243 ggcgggggacgacgacgacga 263 ||||||||||||||||||||| Sbjct: 1057 ggcgggggacgacgacgacga 1037
>gb|AE016959.3| Oryza sativa (japonica cultivar-group) chromosome 10, complete sequence Length = 22698374 Score = 42.1 bits (21), Expect = 0.96 Identities = 24/25 (96%) Strand = Plus / Minus Query: 240 cgaggcgggggacgacgacgacgag 264 |||||||| |||||||||||||||| Sbjct: 15530554 cgaggcggaggacgacgacgacgag 15530530
>gb|DP000010.1| Oryza sativa (japonica cultivar-group) chromosome 11, complete sequence Length = 28369397 Score = 42.1 bits (21), Expect = 0.96 Identities = 21/21 (100%) Strand = Plus / Minus Query: 155 gtcgtcgccgccggcgcgacg 175 ||||||||||||||||||||| Sbjct: 26903119 gtcgtcgccgccggcgcgacg 26903099
>gb|AC134862.4| Mus musculus BAC clone RP24-91P2 from 5, complete sequence Length = 205726 Score = 42.1 bits (21), Expect = 0.96 Identities = 21/21 (100%) Strand = Plus / Plus Query: 49 acccaccccacacccacccca 69 ||||||||||||||||||||| Sbjct: 170094 acccaccccacacccacccca 170114
>emb|CR382127.1| Yarrowia lipolytica chromosome A of strain CLIB122 of Yarrowia lipolytica Length = 2303261 Score = 42.1 bits (21), Expect = 0.96 Identities = 21/21 (100%) Strand = Plus / Minus Query: 250 gacgacgacgacgagtttgcc 270 ||||||||||||||||||||| Sbjct: 1299975 gacgacgacgacgagtttgcc 1299955
>emb|AL669926.6| Mouse DNA sequence from clone RP23-74K21 on chromosome 2, complete sequence Length = 226854 Score = 42.1 bits (21), Expect = 0.96 Identities = 21/21 (100%) Strand = Plus / Plus Query: 49 acccaccccacacccacccca 69 ||||||||||||||||||||| Sbjct: 151728 acccaccccacacccacccca 151748
>gb|AC163660.4| Mus musculus BAC clone RP23-283J16 from chromosome 13, complete sequence Length = 198752 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 acccaccccacacccacccc 68 |||||||||||||||||||| Sbjct: 83267 acccaccccacacccacccc 83286
>ref|XM_466591.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1242 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 gtcgccgccggcgcgacgac 177 |||||||||||||||||||| Sbjct: 580 gtcgccgccggcgcgacgac 561
>ref|XM_464897.1| Oryza sativa (japonica cultivar-group), mRNA Length = 1966 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 gcgggggacgacgacgacga 263 |||||||||||||||||||| Sbjct: 240 gcgggggacgacgacgacga 259
>ref|XM_463636.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1152 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 ggggacgacgacgacgagtt 266 |||||||||||||||||||| Sbjct: 238 ggggacgacgacgacgagtt 257
>gb|AF527807.1| Sorghum bicolor clone BAC SB_BBc0126P21 php200725 orthologous region Length = 75840 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 239 acgaggcgggggacgacgacgacg 262 ||||||||| |||||||||||||| Sbjct: 67095 acgaggcggcggacgacgacgacg 67072
>gb|CP000356.1| Sphingopyxis alaskensis RB2256, complete genome Length = 3345170 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 caccccacctctcgcgcttc 82 |||||||||||||||||||| Sbjct: 1759872 caccccacctctcgcgcttc 1759853
>gb|AC125406.4| Mus musculus BAC clone RP23-32C18 from chromosome 19, complete sequence Length = 208557 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 50 cccaccccacacccaccccacctc 73 |||||||||| ||||||||||||| Sbjct: 15315 cccaccccactcccaccccacctc 15292
>gb|AC165168.3| Mus musculus BAC clone RP23-12D3 from chromosome 19, complete sequence Length = 215151 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 50 cccaccccacacccaccccacctc 73 |||||||||| ||||||||||||| Sbjct: 143930 cccaccccactcccaccccacctc 143907
>emb|AL139794.3|LMFLCHR4B Leishmania major Friedlin chromosome 4, right end Length = 247462 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 gcgggggacgacgacgacga 263 |||||||||||||||||||| Sbjct: 42558 gcgggggacgacgacgacga 42577
>ref|XM_380594.1| Gibberella zeae PH-1 chromosome 1 hypothetical protein (FG00418.1) partial mRNA Length = 2706 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 249 ggacgacgacgacgagtttg 268 |||||||||||||||||||| Sbjct: 1767 ggacgacgacgacgagtttg 1786
>gb|AC109280.9| Mus musculus chromosome 18, clone RP23-400B7, complete sequence Length = 213683 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 50 cccaccccacacccaccccacctc 73 |||||||||| ||||||||||||| Sbjct: 36364 cccaccccacccccaccccacctc 36387
>emb|AL450998.19| Human DNA sequence from clone RP11-169K16 on chromosome 1 Contains the 3' end of the gene for a novel RUN and PH domain-containing protein (KIAA0842), the 5' end of a novel gene, two genes for a novel proteins, a novel gene, the gene for filamin-binding LIM protein-1 (FBLP-1), a ribosomal protein L12 (RPL12) pseudogene, a ubiquinol-cytochrome c reductase hinge protein (UQCRH) pseudogene, a ribosomal protein S16 (RPS16) pseudogene, a novel gene (FLJ42024), the 5' end of the gene for SMART/HDAC1 associated repressor protein (SHARP) and three CpG islands, complete sequence Length = 163108 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 52 caccccacacccaccccacc 71 |||||||||||||||||||| Sbjct: 33362 caccccacacccaccccacc 33381
>emb|AL359874.9| Human DNA sequence from clone RP11-3K22 on chromosome 1, complete sequence Length = 79946 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 50 cccaccccacacccaccccacctc 73 |||||||||| ||||||||||||| Sbjct: 46964 cccaccccacccccaccccacctc 46987
>emb|AL596125.27| Mouse DNA sequence from clone RP23-5O23 on chromosome 11 Contains the Chd3 gene for chromodomain helicase DNA binding protein 3, five novel genes, the 3' end of the gene for a novel protein similar to dynein and four CpG islands, complete sequence Length = 165212 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 51 ccaccccacacccaccccac 70 |||||||||||||||||||| Sbjct: 88344 ccaccccacacccaccccac 88325
>emb|AL645923.14| Mouse DNA sequence from clone RP23-75H1 on chromosome 13 Contains three vomeronasal 1 receptor, H (V1rh) pseudogenes, a V1ri pseudogene, a ribosomal protein L5 (RPL5) pseudogene, the V1rh9, V1rh10 and V1rh20 genes for vomeronasal 1 receptors H9, H10 and H20, the gene for a novel vomeronasal 1 receptor, H (V1rh) family member and a novel gene, complete sequence Length = 157361 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 cccaccccacacccacccca 69 |||||||||||||||||||| Sbjct: 16338 cccaccccacacccacccca 16357
>emb|AJ439398.1|AGA439398 Anopheles gambiae BAC clone 22J3 Length = 95527 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 242 aggcgggggacgacgacgac 261 |||||||||||||||||||| Sbjct: 93247 aggcgggggacgacgacgac 93266
>gb|AC154125.7| Mus musculus chromosome 18, clone RP23-121M18, complete sequence Length = 207258 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 50 cccaccccacacccaccccacctc 73 |||||||||| ||||||||||||| Sbjct: 177600 cccaccccacccccaccccacctc 177623
>dbj|AP003707.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:OJ1485_B09 Length = 66599 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 ggggacgacgacgacgagtt 266 |||||||||||||||||||| Sbjct: 7638 ggggacgacgacgacgagtt 7657
>gb|CP000249.1| Frankia sp. CcI3, complete genome Length = 5433628 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 156 tcgtcgccgccggcgcgacg 175 |||||||||||||||||||| Sbjct: 1456713 tcgtcgccgccggcgcgacg 1456694
>gb|AC124554.5| Mus musculus BAC clone RP23-245F10 from chromosome 3, complete sequence Length = 191481 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 acccaccccacacccacccc 68 |||||||||||||||||||| Sbjct: 825 acccaccccacacccacccc 806
>gb|AF411917.1| Nicotiana langsdorffii x Nicotiana sanderae nectarin I (NecI) mRNA, complete cds Length = 952 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 aacccaccccacacccaccc 67 |||||||||||||||||||| Sbjct: 408 aacccaccccacacccaccc 427
>gb|AF353731.1|AF353731S1 Mus musculus myo-inositol monophosphatase 2 (Impa2) gene, exons 2 through 5 Length = 10622 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 50 cccaccccacacccaccccacctc 73 |||||||||| ||||||||||||| Sbjct: 3694 cccaccccacccccaccccacctc 3671
>gb|CP000116.1| Thiobacillus denitrificans ATCC 25259, complete genome Length = 2909809 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 155 gtcgtcgccgccggcgcgacgacc 178 |||||||||| ||||||||||||| Sbjct: 2843692 gtcgtcgccgacggcgcgacgacc 2843669
>emb|AL114798.1|CNS01BX2 Botrytis cinerea strain T4 cDNA library Length = 936 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 50 cccaccccacacccaccccacctc 73 ||||||||||||||||||| |||| Sbjct: 598 cccaccccacacccaccccccctc 621
>dbj|AP008218.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 12, complete sequence Length = 27566993 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 cgggggacgacgacgacgag 264 |||||||||||||||||||| Sbjct: 11132399 cgggggacgacgacgacgag 11132418 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 240 cgaggcgggggacgacgacgacga 263 |||||||| ||||||||||||||| Sbjct: 4746220 cgaggcggaggacgacgacgacga 4746243
>dbj|AP008212.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, complete sequence Length = 30731886 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 ggcggcagtcgtcgccgccg 167 |||||||||||||||||||| Sbjct: 19902545 ggcggcagtcgtcgccgccg 19902564
>dbj|AP008208.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, complete sequence Length = 35954743 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 gtcgccgccggcgcgacgac 177 |||||||||||||||||||| Sbjct: 23579944 gtcgccgccggcgcgacgac 23579925 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 gcgggggacgacgacgacga 263 |||||||||||||||||||| Sbjct: 9082099 gcgggggacgacgacgacga 9082118
>dbj|AB089954.1| Micromonospora griseorubida gene cluster for the polyketide macrolide mycinamicin, partial and comeplete cds Length = 58343 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 194 cctccgataacacctccgactccg 217 ||||||| |||||||||||||||| Sbjct: 38019 cctccgaaaacacctccgactccg 37996 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 194 cctccgataacacctccgactccg 217 ||||||| |||||||||||||||| Sbjct: 31399 cctccgaaaacacctccgactccg 31376 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 194 cctccgataacacctccgactccg 217 ||||||| |||||||||||||||| Sbjct: 27064 cctccgaaaacacctccgactccg 27041
>gb|AC018845.7| Homo sapiens chromosome 16 clone RP11-169E6, complete sequence Length = 176184 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 cccaccccacacccacccca 69 |||||||||||||||||||| Sbjct: 49172 cccaccccacacccacccca 49153
>dbj|AP003437.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0678F11 Length = 154292 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 ggggacgacgacgacgagtt 266 |||||||||||||||||||| Sbjct: 151770 ggggacgacgacgacgagtt 151789
>dbj|AP006843.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1793G04 Length = 156714 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 ggggacgacgacgacgagtt 266 |||||||||||||||||||| Sbjct: 74464 ggggacgacgacgacgagtt 74483
>gb|AC034151.6| Homo sapiens BAC clone RP11-168J1 from 2, complete sequence Length = 157666 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 gcagtcgtcgccgccggcgc 171 |||||||||||||||||||| Sbjct: 44981 gcagtcgtcgccgccggcgc 45000
>gb|AC128677.4| Homo sapiens BAC clone RP11-271A22 from 2, complete sequence Length = 158087 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 152 gcagtcgtcgccgccggcgc 171 |||||||||||||||||||| Sbjct: 65562 gcagtcgtcgccgccggcgc 65581
>dbj|AP004818.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, PAC clone:P0551A03 Length = 173027 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 ggcggcagtcgtcgccgccg 167 |||||||||||||||||||| Sbjct: 169590 ggcggcagtcgtcgccgccg 169609
>dbj|AP004809.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 6, BAC clone:B1018E06 Length = 178499 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 148 ggcggcagtcgtcgccgccg 167 |||||||||||||||||||| Sbjct: 40885 ggcggcagtcgtcgccgccg 40904
>dbj|AP006165.2| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, BAC clone:B1425D05, complete sequence Length = 66450 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 247 ggggacgacgacgacgagtt 266 |||||||||||||||||||| Sbjct: 36 ggggacgacgacgacgagtt 55
>dbj|AP005385.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1791_B03 Length = 166214 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 gtcgccgccggcgcgacgac 177 |||||||||||||||||||| Sbjct: 145627 gtcgccgccggcgcgacgac 145608
>dbj|AP006160.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:B1178F07 Length = 144454 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 gcgggggacgacgacgacga 263 |||||||||||||||||||| Sbjct: 122545 gcgggggacgacgacgacga 122564
>dbj|AP005803.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OSJNBa0060K08 Length = 159626 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 gcgggggacgacgacgacga 263 |||||||||||||||||||| Sbjct: 154708 gcgggggacgacgacgacga 154727
>dbj|AP004124.3| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 2, BAC clone:OJ1669_F01 Length = 140019 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 gtcgccgccggcgcgacgac 177 |||||||||||||||||||| Sbjct: 21044 gtcgccgccggcgcgacgac 21025
>dbj|AK103400.1| Oryza sativa (japonica cultivar-group) cDNA clone:J033128B04, full insert sequence Length = 1242 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 gtcgccgccggcgcgacgac 177 |||||||||||||||||||| Sbjct: 580 gtcgccgccggcgcgacgac 561
>dbj|AK100835.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023123D22, full insert sequence Length = 2036 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 244 gcgggggacgacgacgacga 263 |||||||||||||||||||| Sbjct: 240 gcgggggacgacgacgacga 259
>gb|AC009731.6|AC009731 Homo sapiens 12 BAC RP11-438N16 (Roswell Park Cancer Institute Human BAC Library) complete sequence Length = 172749 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 50 cccaccccacacccacccca 69 |||||||||||||||||||| Sbjct: 28315 cccaccccacacccacccca 28334
>gb|AF132671.1|AF132671 Nicotiana plumbaginifolia nectarin I precursor (NEC1) gene, complete cds Length = 3662 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 48 aacccaccccacacccaccc 67 |||||||||||||||||||| Sbjct: 2065 aacccaccccacacccaccc 2084
>gb|AC156270.5| Mus musculus 10 BAC RP24-289H6 (Roswell Park Cancer Institute (C57BL/6J Male) Mouse BAC Library) complete sequence Length = 163328 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 50 cccaccccacacccacccca 69 |||||||||||||||||||| Sbjct: 55956 cccaccccacacccacccca 55937
>gb|AC154506.4| Mus musculus BAC clone RP24-94N16 from chromosome 13, complete sequence Length = 164500 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 acccaccccacacccacccc 68 |||||||||||||||||||| Sbjct: 151205 acccaccccacacccacccc 151224
>gb|DP000011.1| Oryza sativa (japonica cultivar-group) chromosome 12, complete sequence Length = 27492551 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 245 cgggggacgacgacgacgag 264 |||||||||||||||||||| Sbjct: 11132098 cgggggacgacgacgacgag 11132117 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Plus Query: 240 cgaggcgggggacgacgacgacga 263 |||||||| ||||||||||||||| Sbjct: 4746201 cgaggcggaggacgacgacgacga 4746224
>emb|AL831796.5|CNS08CA9 Oryza sativa chromosome 12, . BAC OSJNBa0012G19 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 157771 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 245 cgggggacgacgacgacgag 264 |||||||||||||||||||| Sbjct: 53776 cgggggacgacgacgacgag 53757
>emb|AL713946.3|CNS07YPP Oryza sativa chromosome 12, . BAC OJ1005_B07 of library Monsanto from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 161762 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 240 cgaggcgggggacgacgacgacga 263 |||||||| ||||||||||||||| Sbjct: 100911 cgaggcggaggacgacgacgacga 100888
>emb|AL928750.3|CNS08CBN Oryza sativa chromosome 12, . BAC OSJNBa0063C08 of library OSJNBa from chromosome 12 of cultivar Nipponbare of ssp. japonica of Oryza sativa (rice), complete sequence Length = 147355 Score = 40.1 bits (20), Expect = 3.8 Identities = 23/24 (95%) Strand = Plus / Minus Query: 240 cgaggcgggggacgacgacgacga 263 |||||||| ||||||||||||||| Sbjct: 5907 cgaggcggaggacgacgacgacga 5884
>gb|AC116589.5| Mus musculus BAC clone RP24-65K2 from 13, complete sequence Length = 213661 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Plus Query: 49 acccaccccacacccacccc 68 |||||||||||||||||||| Sbjct: 153507 acccaccccacacccacccc 153526
>gb|AC132225.3| Mus musculus BAC clone RP24-558H21 from 3, complete sequence Length = 189301 Score = 40.1 bits (20), Expect = 3.8 Identities = 20/20 (100%) Strand = Plus / Minus Query: 49 acccaccccacacccacccc 68 |||||||||||||||||||| Sbjct: 187104 acccaccccacacccacccc 187085 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,110,507 Number of Sequences: 3902068 Number of extensions: 2110507 Number of successful extensions: 81502 Number of sequences better than 10.0: 106 Number of HSP's better than 10.0 without gapping: 111 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 79273 Number of HSP's gapped (non-prelim): 2227 length of query: 291 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 269 effective length of database: 17,147,199,772 effective search space: 4612596738668 effective search space used: 4612596738668 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)
