ナショナルバイオリソースプロジェクト
-Barley Genetic Resources Database-
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| Clone Name | bastl41h09 |
|---|---|
| Clone Library Name | barley_pub |
>LOX1_HORVU (P29114) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 169 bits (428), Expect = 2e-42 Identities = 85/86 (98%), Positives = 85/86 (98%) Frame = +2 Query: 110 MLLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISST 289 MLLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISST Sbjct: 1 MLLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISST 60 Query: 290 AVDQDNGGRGKVGAEAELEQWXTSLP 367 AVDQDNGGRGKVGAEAELEQW TSLP Sbjct: 61 AVDQDNGGRGKVGAEAELEQWVTSLP 86
>LOX3_ORYSA (Q7G794) Putative lipoxygenase 3 (EC 1.13.11.12)| Length = 866 Score = 145 bits (366), Expect = 2e-35 Identities = 69/83 (83%), Positives = 78/83 (93%) Frame = +2 Query: 113 LLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISSTA 292 +LGG+IDT+TG++K +RLKGTVVLMRKNVLDLNDFGAT+IDG+GEFLGKGVTCQLISSTA Sbjct: 1 MLGGIIDTITGSSKQSRLKGTVVLMRKNVLDLNDFGATVIDGLGEFLGKGVTCQLISSTA 60 Query: 293 VDQDNGGRGKVGAEAELEQWXTS 361 VD +NG RGKVGAEA LEQW TS Sbjct: 61 VDPNNGNRGKVGAEASLEQWLTS 83
>LOX2_ORYSA (P29250) Lipoxygenase 2 (EC 1.13.11.12) (Lipoxygenase L-2)| Length = 870 Score = 129 bits (324), Expect = 2e-30 Identities = 62/85 (72%), Positives = 74/85 (87%) Frame = +2 Query: 113 LLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISSTA 292 +LGG+I LTG NK+ARLKG++VLMRKN LD+NDFGAT+IDGI EFLG+GVTCQL+SS+ Sbjct: 1 MLGGIIGGLTG-NKNARLKGSLVLMRKNALDINDFGATVIDGISEFLGRGVTCQLVSSSL 59 Query: 293 VDQDNGGRGKVGAEAELEQWXTSLP 367 VD +NG RG+VG EA LEQW TSLP Sbjct: 60 VDPNNGNRGRVGTEASLEQWLTSLP 84
>LOX1_ORYSA (Q76I22) Lipoxygenase 1 (EC 1.13.11.12) (9-lipoxygenase) (r9-LOX1)| Length = 863 Score = 89.0 bits (219), Expect = 3e-18 Identities = 44/85 (51%), Positives = 59/85 (69%) Frame = +2 Query: 113 LLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISSTA 292 +LGGL D LTG N + ++KG VLM + +LD DF A+++D + E G +TCQL+S+T Sbjct: 1 MLGGLKDKLTGKNGN-KIKGLAVLMSRKLLDPRDFTASLLDNVHEVFGNSITCQLVSATV 59 Query: 293 VDQDNGGRGKVGAEAELEQWXTSLP 367 DQ+N GRG VG+EA LEQ T LP Sbjct: 60 ADQNNEGRGIVGSEANLEQGLTDLP 84
>LOX1_ARATH (Q06327) Lipoxygenase 1 (EC 1.13.11.12)| Length = 859 Score = 87.4 bits (215), Expect = 8e-18 Identities = 42/87 (48%), Positives = 57/87 (65%), Gaps = 3/87 (3%) Frame = +2 Query: 113 LLGGLIDTLTGANKSA---RLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLIS 283 + G L D LTG ++KGTVVLM+KNVLD NDF A+ +D + EFLG +T +L+S Sbjct: 1 MFGELRDLLTGGGNETTTKKVKGTVVLMKKNVLDFNDFNASFLDRLHEFLGNKITLRLVS 60 Query: 284 STAVDQDNGGRGKVGAEAELEQWXTSL 364 S D +NG +GK+G A LE W T++ Sbjct: 61 SDVTDSENGSKGKLGKAAHLEDWITTI 87
>LOX4_ORYSA (Q53RB0) Probable lipoxygenase 4 (EC 1.13.11.12)| Length = 877 Score = 78.2 bits (191), Expect = 5e-15 Identities = 42/86 (48%), Positives = 58/86 (67%), Gaps = 6/86 (6%) Frame = +2 Query: 110 MLLGGLIDTLTGANKSA----RLKGTVVLMRKNVLDLNDFGATIIDGIGEFLG--KGVTC 271 M + G D LTG NK A R++GT VL++K+VL L DF A+++DG+ LG +GV Sbjct: 1 MQVQGFFDRLTGRNKEAWKEGRIRGTAVLVKKDVLGLGDFHASLLDGVHNILGHKEGVAF 60 Query: 272 QLISSTAVDQDNGGRGKVGAEAELEQ 349 +L+S+TA D NGGRGK+G A LE+ Sbjct: 61 RLVSATARDPSNGGRGKLGKPAHLEE 86
>LOXB_LYCES (P38416) Lipoxygenase B (EC 1.13.11.12)| Length = 859 Score = 73.6 bits (179), Expect = 1e-13 Identities = 38/85 (44%), Positives = 57/85 (67%) Frame = +2 Query: 110 MLLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISST 289 M LGG++D + G + ++KG V+LM+KNVLD + GA+++DGI + LG+ V+ QLIS Sbjct: 1 MSLGGIVDAILGKDDRPKVKGRVILMKKNVLDFINIGASVVDGISDLLGQKVSIQLISG- 59 Query: 290 AVDQDNGGRGKVGAEAELEQWXTSL 364 +V+ D G GK+ A LE W T + Sbjct: 60 SVNYD-GLEGKLSNPAYLESWLTDI 83
>LOXA_LYCES (P38415) Lipoxygenase A (EC 1.13.11.12)| Length = 860 Score = 63.2 bits (152), Expect = 2e-10 Identities = 38/84 (45%), Positives = 51/84 (60%) Frame = +2 Query: 113 LLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISSTA 292 L+GGLI G + S ++KGTVV+M+KN LD D ++ D I E LG+ V+ QLISS Sbjct: 5 LVGGLIG---GHHDSKKVKGTVVMMKKNALDFTDLAGSLTDKIFEALGQKVSFQLISSVQ 61 Query: 293 VDQDNGGRGKVGAEAELEQWXTSL 364 D NG +GK A LE + +L Sbjct: 62 SDPANGLQGKHSNPAYLENFLLTL 85
>LOX2_PEA (P14856) Seed lipoxygenase-2 (EC 1.13.11.12)| Length = 864 Score = 61.2 bits (147), Expect = 6e-10 Identities = 41/91 (45%), Positives = 50/91 (54%), Gaps = 18/91 (19%) Frame = +2 Query: 149 NKSARLKGTVVLMRKNVLDLN--------------DFGATII----DGIGEFLGKGVTCQ 274 NK +++GTVVLMRKNVLD N D G II DG+ FLG+ V+ Q Sbjct: 10 NKGHKIRGTVVLMRKNVLDFNTIVSIGGGNVHGVIDSGINIIGSTLDGLTAFLGRSVSLQ 69 Query: 275 LISSTAVDQDNGGRGKVGAEAELEQWXTSLP 367 LIS+T D G+GKVG + LE SLP Sbjct: 70 LISAT--KSDANGKGKVGKDTFLEGVLASLP 98
>LOX1_SOYBN (P08170) Seed lipoxygenase-1 (EC 1.13.11.12) (L-1)| Length = 839 Score = 59.7 bits (143), Expect = 2e-09 Identities = 34/69 (49%), Positives = 46/69 (66%) Frame = +2 Query: 161 RLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISSTAVDQDNGGRGKVGAEAE 340 ++KGTVVLM KN L++N G+ + D + FLG+ V+ QLIS+T D G+GKVG + Sbjct: 7 KIKGTVVLMPKNELEVNPDGSAV-DNLNAFLGRSVSLQLISATKADAH--GKGKVGKDTF 63 Query: 341 LEQWXTSLP 367 LE TSLP Sbjct: 64 LEGINTSLP 72
>LOX3_PEA (P09918) Seed lipoxygenase-3 (EC 1.13.11.12)| Length = 861 Score = 58.5 bits (140), Expect = 4e-09 Identities = 36/86 (41%), Positives = 49/86 (56%), Gaps = 13/86 (15%) Frame = +2 Query: 149 NKSARLKGTVVLMRKNVLDLN-------------DFGATIIDGIGEFLGKGVTCQLISST 289 N+ ++KGTVVLMRKNVLD+N D + +D + FLG+ V+ QLIS+T Sbjct: 10 NRGHKIKGTVVLMRKNVLDINSLTTVGGVIGQGFDILGSTVDNLTAFLGRSVSLQLISAT 69 Query: 290 AVDQDNGGRGKVGAEAELEQWXTSLP 367 D G+GK+G LE +SLP Sbjct: 70 KPDAT--GKGKLGKATFLEGIISSLP 93
>LOX3_SOYBN (P09186) Seed lipoxygenase-3 (EC 1.13.11.12) (L-3)| Length = 857 Score = 57.8 bits (138), Expect = 6e-09 Identities = 39/98 (39%), Positives = 55/98 (56%), Gaps = 13/98 (13%) Frame = +2 Query: 113 LLGGLIDTLTGANKSARLKGTVVLMRKNVLDLN-------------DFGATIIDGIGEFL 253 +LGGL+ ++ ++KGTVVLMRKNVL +N D + +D + FL Sbjct: 1 MLGGLL------HRGHKIKGTVVLMRKNVLHVNSVTSVGGIIGQGLDLVGSTLDTLTAFL 54 Query: 254 GKGVTCQLISSTAVDQDNGGRGKVGAEAELEQWXTSLP 367 G+ V+ QLIS+T D + G+GK+G LE TSLP Sbjct: 55 GRPVSLQLISATKADAN--GKGKLGKATFLEGIITSLP 90
>LOX1_LENCU (P38414) Lipoxygenase (EC 1.13.11.12)| Length = 866 Score = 55.5 bits (132), Expect = 3e-08 Identities = 36/92 (39%), Positives = 47/92 (51%), Gaps = 20/92 (21%) Frame = +2 Query: 152 KSARLKGTVVLMRKNVLDLN--------------------DFGATIIDGIGEFLGKGVTC 271 + +LKGTV+LM+KNVLD+N +IID FLG+ V Sbjct: 8 RGQKLKGTVILMQKNVLDINALTAAQSPSGIIGGAFGVVGSIAGSIIDTATAFLGRSVRL 67 Query: 272 QLISSTAVDQDNGGRGKVGAEAELEQWXTSLP 367 +LIS+T D G+GKV EA LE TS+P Sbjct: 68 RLISATVADA--SGKGKVSKEAFLEGLLTSIP 97
>LOX1_SOLTU (P37831) Lipoxygenase 1 (EC 1.13.11.12)| Length = 861 Score = 55.1 bits (131), Expect = 4e-08 Identities = 31/68 (45%), Positives = 41/68 (60%) Frame = +2 Query: 143 GANKSARLKGTVVLMRKNVLDLNDFGATIIDGIGEFLGKGVTCQLISSTAVDQDNGGRGK 322 G + S ++KGTVV+M KNVLD D ++ I + LG+ V+ QLISS D NG +GK Sbjct: 12 GHDDSKKVKGTVVMMNKNVLDFTDLAGSLTGKIFDVLGQKVSFQLISSVQGDPTNGLQGK 71 Query: 323 VGAEAELE 346 A LE Sbjct: 72 HSNPAYLE 79
>LOXX_SOYBN (P24095) Seed lipoxygenase (EC 1.13.11.12)| Length = 864 Score = 53.1 bits (126), Expect = 2e-07 Identities = 35/95 (36%), Positives = 48/95 (50%), Gaps = 22/95 (23%) Frame = +2 Query: 149 NKSARLKGTVVLMRKNVLDLNDF------------------GATIIDGI----GEFLGKG 262 +K ++KGTVVLM KNVLD N G +++ G+ FLG+ Sbjct: 6 DKGQKIKGTVVLMPKNVLDFNAITSIGKGGVIDTATGILGQGVSLVGGVIDTATSFLGRN 65 Query: 263 VTCQLISSTAVDQDNGGRGKVGAEAELEQWXTSLP 367 ++ QLIS+T D G GKVG E LE+ +LP Sbjct: 66 ISMQLISAT--QTDGSGNGKVGKEVYLEKHLPTLP 98
>LOXA_PHAVU (P27480) Lipoxygenase 1 (EC 1.13.11.12)| Length = 862 Score = 52.0 bits (123), Expect = 4e-07 Identities = 34/95 (35%), Positives = 45/95 (47%), Gaps = 22/95 (23%) Frame = +2 Query: 149 NKSARLKGTVVLMRKNVLDLNDFGAT----------------------IIDGIGEFLGKG 262 N+ ++KGTVVLM KNV D N+F +T I+DG + Sbjct: 6 NRGHKIKGTVVLMTKNVFDFNEFVSTTRGGIVGAAGGLFGAATDIVGGIVDGATAIFSRN 65 Query: 263 VTCQLISSTAVDQDNGGRGKVGAEAELEQWXTSLP 367 + QLIS+T D G GKVG + LE+ SLP Sbjct: 66 IAIQLISATKT--DGLGNGKVGKQTFLEKHLPSLP 98
>LOX2_SOYBN (P09439) Seed lipoxygenase-2 (EC 1.13.11.12) (L-2)| Length = 865 Score = 50.4 bits (119), Expect = 1e-06 Identities = 34/87 (39%), Positives = 44/87 (50%), Gaps = 18/87 (20%) Frame = +2 Query: 161 RLKGTVVLMRKNVLDLNDFG------------------ATIIDGIGEFLGKGVTCQLISS 286 ++KGTVVLMRKNVLD N + +D + FLG+ V QLIS+ Sbjct: 18 KIKGTVVLMRKNVLDFNSVADLTKGNVGGLIGTGLNVVGSTLDNLTAFLGRSVALQLISA 77 Query: 287 TAVDQDNGGRGKVGAEAELEQWXTSLP 367 T + G+GKVG + LE SLP Sbjct: 78 TKPLAN--GKGKVGKDTFLEGIIVSLP 102
>LOX4_SOYBN (P38417) Lipoxygenase-4 (EC 1.13.11.12) (L-4) (VSP94)| Length = 853 Score = 47.0 bits (110), Expect = 1e-05 Identities = 30/77 (38%), Positives = 43/77 (55%), Gaps = 13/77 (16%) Frame = +2 Query: 152 KSARLKGTVVLMRKNVLDLNDF---GATIIDGIGEFLGKGV----------TCQLISSTA 292 K ++KGT+V+M+KNVLD+N G + G+G F+G V + QLIS+T Sbjct: 7 KGQKIKGTMVVMQKNVLDINSITSVGGIVDQGLG-FIGSAVDALTFAATKISIQLISATK 65 Query: 293 VDQDNGGRGKVGAEAEL 343 D GG+GK+G L Sbjct: 66 AD---GGKGKIGKSTNL 79
>OAR_MYXXA (P38370) Protein oar precursor| Length = 1061 Score = 31.2 bits (69), Expect = 0.64 Identities = 14/32 (43%), Positives = 20/32 (62%) Frame = +2 Query: 134 TLTGANKSARLKGTVVLMRKNVLDLNDFGATI 229 TL G K R +GTV+ + + +L DFGAT+ Sbjct: 261 TLEGTRKQIREEGTVITGQNQLQNLGDFGATL 292
>WEB1_YEAST (P38968) Protein WEB1 (Protein transport protein SEC31)| Length = 1273 Score = 30.0 bits (66), Expect = 1.4 Identities = 18/46 (39%), Positives = 30/46 (65%), Gaps = 1/46 (2%) Frame = -1 Query: 333 SAPTFPRPPLSWS-TAVELISWQVTPLPRNSPMPSMMVAPKSLRSS 199 +A T P PPLS + ++V ++S PL +NS +PS++ +S R+S Sbjct: 960 AASTMPPPPLSRAPSSVSMVS--PPPLHKNSRVPSLVATSESPRAS 1003
>HEM6_SOYBN (P35055) Coproporphyrinogen III oxidase, chloroplast precursor (EC| 1.3.3.3) (Coproporphyrinogenase) (Coprogen oxidase) Length = 385 Score = 28.9 bits (63), Expect = 3.2 Identities = 22/66 (33%), Positives = 32/66 (48%), Gaps = 11/66 (16%) Frame = -1 Query: 351 HCSSSASAPTFPRPPLSWS-----TAVELI--SWQVTPLPRNSPMPSMM----VAPKSLR 205 HC+S SAP++ P S S TA+ L SW+ P P+ + + P++ R Sbjct: 3 HCASIVSAPSYAFPFRSGSASTTPTAISLTKRSWKPPPSMAKGPVRATVSIEKETPEANR 62 Query: 204 SSTFLR 187 TFLR Sbjct: 63 PETFLR 68
>AGO2_DROME (Q9VUQ5) Argonaute 2 protein| Length = 1214 Score = 28.9 bits (63), Expect = 3.2 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = +1 Query: 73 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 198 G + R GQ+Q + + GG Q+RP+ G H Q R Sbjct: 315 GGYQQRPSGQQQGGHQQGRQGQEGGYQQRPSGQQQGGHQQGR 356 Score = 28.9 bits (63), Expect = 3.2 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = +1 Query: 73 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 198 G + R GQ+Q + + GG Q+RP+ G H Q R Sbjct: 292 GGYQQRPSGQQQGGHQQGRQGQEGGYQQRPSGQQQGGHQQGR 333 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = +1 Query: 73 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 198 G + R GQ+Q + + GG Q+RP+ G H Q R Sbjct: 269 GGYQQRPPGQQQGGHEQGRQGQEGGYQQRPSGQQQGGHQQGR 310 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/42 (33%), Positives = 19/42 (45%) Frame = +1 Query: 73 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 198 G + R GQ+Q + + GG Q+RP G H Q R Sbjct: 223 GGYQQRPSGQQQGGHQQGRQGQEGGYQQRPPGQQQGGHQQGR 264 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = +1 Query: 73 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 198 G + R GQ+Q + + GG Q+RP+ G H Q R Sbjct: 200 GGYQQRPPGQQQGGHQQGRQGQEGGYQQRPSGQQQGGHQQGR 241 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/42 (33%), Positives = 19/42 (45%) Frame = +1 Query: 73 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 198 G + R GQ+Q + + GG Q+RP G H Q R Sbjct: 177 GGYQQRPSGQQQGGHQQGRQGQEGGYQQRPPGQQQGGHQQGR 218 Score = 28.1 bits (61), Expect = 5.4 Identities = 14/42 (33%), Positives = 20/42 (47%) Frame = +1 Query: 73 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 198 G + R GQ+Q + + GG Q+RP+ G H Q R Sbjct: 154 GGYQQRPPGQQQGGHQQGRQGQEGGYQQRPSGQQQGGHQQGR 195 Score = 27.3 bits (59), Expect = 9.3 Identities = 14/42 (33%), Positives = 19/42 (45%) Frame = +1 Query: 73 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 198 G + R GQ+Q + + GG Q+RP G H Q R Sbjct: 246 GGYQQRPPGQQQGGHQQGRQGQEGGYQQRPPGQQQGGHEQGR 287 Score = 27.3 bits (59), Expect = 9.3 Identities = 14/42 (33%), Positives = 19/42 (45%) Frame = +1 Query: 73 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQER 198 G + R GQ+Q + + GG Q+RP G H Q R Sbjct: 131 GGYQQRPPGQQQGGHQQGRQGQEGGYQQRPPGQQQGGHQQGR 172
>SCRT2_HUMAN (Q9NQ03) Transcriptional repressor scratch 2 (Scratch homolog 2| zinc finger protein) Length = 307 Score = 28.5 bits (62), Expect = 4.2 Identities = 15/38 (39%), Positives = 16/38 (42%) Frame = +1 Query: 73 GAVKARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAH 186 G + RRGG DA G D GG R GG H Sbjct: 116 GRSRRRRGGGGGDAGGSGDAGGAGGRAGRAGAQAGGGH 153
>VIV_ORYSA (P37398) Protein viviparous homolog| Length = 728 Score = 28.1 bits (61), Expect = 5.4 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 11/56 (19%) Frame = +1 Query: 67 LVGAVKARRGGQEQ-DAAGRADRHPHGGEQE-------RPA---QGHGGAHAQERA 201 L+ VK RR QEQ +++G +H HG ++ +PA G GG + E A Sbjct: 632 LIRGVKVRRAAQEQGNSSGAVGKHKHGSPEKPGVSSNTKPAGAEDGTGGDDSPEAA 687
>DOF52_ARATH (Q93ZL5) Dof zinc finger protein DOF5.2 (AtDOF5.2)| Length = 457 Score = 27.7 bits (60), Expect = 7.1 Identities = 10/23 (43%), Positives = 13/23 (56%) Frame = -1 Query: 327 PTFPRPPLSWSTAVELISWQVTP 259 P FP PP +W A +SW + P Sbjct: 286 PCFPGPPPTWPYAWNGVSWTILP 308
>SRCH_RABIT (P16230) Sarcoplasmic reticulum histidine-rich calcium-binding| protein precursor Length = 852 Score = 27.7 bits (60), Expect = 7.1 Identities = 11/38 (28%), Positives = 21/38 (55%) Frame = +1 Query: 82 KARRGGQEQDAAGRADRHPHGGEQERPAQGHGGAHAQE 195 + +RGG E++ + H ++E +GHG + +QE Sbjct: 661 RVKRGGSEEEEEQKGTHHHSLEDEEDEEEGHGRSLSQE 698
>NPAS3_HUMAN (Q8IXF0) Neuronal PAS domain protein 3 (Neuronal PAS3) (Member of| PAS protein 6) (MOP6) Length = 933 Score = 27.7 bits (60), Expect = 7.1 Identities = 12/31 (38%), Positives = 18/31 (58%) Frame = -1 Query: 264 TPLPRNSPMPSMMVAPKSLRSSTFLRMSTTV 172 TP P S PS++ +L S F+RM +T+ Sbjct: 241 TPEPVESTSPSLLTTDNTLERSFFIRMKSTL 271
>SDHD_BURPS (Q63IF8) Probable D-serine dehydratase (EC 4.3.1.18) (D-serine| deaminase) (DSD) Length = 445 Score = 27.3 bits (59), Expect = 9.3 Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 3/53 (5%) Frame = +1 Query: 43 VKNSVLVPLVGAVKARRGGQEQDAAGR--ADRHP-HGGEQERPAQGHGGAHAQ 192 VK +P+ G++KAR G E A A+RH G + +R A G A A+ Sbjct: 98 VKRDDALPVAGSIKARGGFHEVLALAESIAERHGLAGADTDRRALASGAARAR 150
>CHD1_HUMAN (O14646) Chromodomain-helicase-DNA-binding protein 1 (EC 3.6.1.-)| (ATP-dependent helicase CHD1) (CHD-1) Length = 1709 Score = 27.3 bits (59), Expect = 9.3 Identities = 15/46 (32%), Positives = 23/46 (50%) Frame = +2 Query: 101 KNKMLLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDG 238 K+K LGGL G +++ RLK L+ K ++D +I G Sbjct: 598 KDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITG 643
>SCA4_RICAU (Q9AJ64) Antigenic heat-stable 120 kDa protein (PS120) (120 kDa| antigen) (Protein PS 120) (Fragment) Length = 991 Score = 27.3 bits (59), Expect = 9.3 Identities = 16/65 (24%), Positives = 35/65 (53%), Gaps = 1/65 (1%) Frame = +2 Query: 92 EEAKNKMLLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDF-GATIIDGIGEFLGKGVT 268 ++ + + G+ DT+ +N S + KGT+++ + ++ ++ A +G L KGV Sbjct: 526 DDTSRAVAIDGITDTVIKSNLSTKDKGTMLIAVGDKVNASELSNAEKQQLLGSVLKKGVE 585 Query: 269 CQLIS 283 Q++S Sbjct: 586 TQVLS 590
>RL2_XANCP (Q8PC46) 50S ribosomal protein L2| Length = 275 Score = 27.3 bits (59), Expect = 9.3 Identities = 14/33 (42%), Positives = 20/33 (60%), Gaps = 2/33 (6%) Frame = +1 Query: 82 KARRGGQE--QDAAGRADRHPHGGEQERPAQGH 174 K RRG + + AA A+ HPHGG + + QG+ Sbjct: 211 KRRRGVRPTVRGAAMNANDHPHGGGEAKAGQGN 243
>GEI8_CAEEL (P34333) Gex-3-interacting protein 8| Length = 1780 Score = 27.3 bits (59), Expect = 9.3 Identities = 18/41 (43%), Positives = 21/41 (51%) Frame = -1 Query: 345 SSSASAPTFPRPPLSWSTAVELISWQVTPLPRNSPMPSMMV 223 SSSASAP F +PP + S A TP+ MPS V Sbjct: 1630 SSSASAPQFLQPPAAASIAAP------TPISTPHAMPSPSV 1664
>CI040_MOUSE (Q8VCE4) Protein C9orf40 homolog| Length = 163 Score = 27.3 bits (59), Expect = 9.3 Identities = 16/46 (34%), Positives = 19/46 (41%), Gaps = 4/46 (8%) Frame = +1 Query: 55 VLVPLVGAVKARRGG----QEQDAAGRADRHPHGGEQERPAQGHGG 180 ++ A + RRGG QE R P GEQE P GG Sbjct: 49 IMAEPASAPRKRRGGGDDRQELQGCSREPGEPPPGEQEEPRAAGGG 94
>CHD1_MOUSE (P40201) Chromodomain-helicase-DNA-binding protein 1 (EC 3.6.1.-)| (ATP-dependent helicase CHD1) (CHD-1) Length = 1711 Score = 27.3 bits (59), Expect = 9.3 Identities = 15/46 (32%), Positives = 23/46 (50%) Frame = +2 Query: 101 KNKMLLGGLIDTLTGANKSARLKGTVVLMRKNVLDLNDFGATIIDG 238 K+K LGGL G +++ RLK L+ K ++D +I G Sbjct: 596 KDKAFLGGLNWAFIGVDEAHRLKNDDSLLYKTLIDFKSNHRLLITG 641
>CSP_PLAKU (P04922) Circumsporozoite protein precursor (CS)| Length = 351 Score = 27.3 bits (59), Expect = 9.3 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%) Frame = +1 Query: 73 GAVKARRGGQEQDAAGRADRHPHGGEQ-ERPAQGHGG 180 G A G EQ AAG P G + E+PA G GG Sbjct: 187 GEQPAAGAGGEQPAAGAGGEQPAAGARGEQPAAGAGG 223 Score = 27.3 bits (59), Expect = 9.3 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%) Frame = +1 Query: 73 GAVKARRGGQEQDAAGRADRHPHGGEQ-ERPAQGHGG 180 G A G EQ AAG P G + E+PA G GG Sbjct: 160 GEQPAAGAGGEQPAAGAGGEQPAAGARGEQPAAGAGG 196 Score = 27.3 bits (59), Expect = 9.3 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 1/37 (2%) Frame = +1 Query: 73 GAVKARRGGQEQDAAGRADRHPHGGEQ-ERPAQGHGG 180 G A G EQ AAG P G + E+PA G GG Sbjct: 106 GEQPAAGAGGEQPAAGAGGEQPAAGARGEQPAAGAGG 142 Database: uniprot_sprot.fasta Posted date: May 25, 2006 5:36 PM Number of letters in database: 80,573,946 Number of sequences in database: 219,361 Lambda K H 0.311 0.131 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 38,944,400 Number of Sequences: 219361 Number of extensions: 701615 Number of successful extensions: 2155 Number of sequences better than 10.0: 35 Number of HSP's better than 10.0 without gapping: 1998 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 2131 length of database: 80,573,946 effective HSP length: 99 effective length of database: 58,857,207 effective search space used: 1412572968 frameshift window, decay const: 50, 0.1 T: 12 A: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits)
