>SMBP2_HUMAN (P38935) DNA-binding protein SMUBP-2 (EC 3.6.1.-) (ATP-dependent|
            helicase IGHMBP2) (Immunoglobulin mu-binding protein 2)
            (SMUBP-2) (Glial factor 1) (GF-1)
          Length = 993

 Score = 35.4 bits (80), Expect = 0.034
 Identities = 17/59 (28%), Positives = 31/59 (52%), Gaps = 3/59 (5%)
 Frame = +3

Query: 210  KSSRGLSRWKNPCQLSTMKVCLMHQLPDLHG---RLKVYPSRIVERSTLMFLLSGVTAG 377
            K + G++     CQL + + CL H LP++HG   R + +  + + R  +++  SG   G
Sbjct: 901  KCTAGVTTLGQFCQLCSRRYCLSHHLPEIHGCGERARAHARQRISREGVLYAGSGTKNG 959

>BBS5_BRARE (Q7ZWB7) Bardet-Biedl syndrome 5 protein homolog|
          Length = 342

 Score = 29.3 bits (64), Expect = 2.4
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 3/48 (6%)
 Frame = +2

Query: 203 EVEVFEGPQPMEE---SMPAVDNESLPDASTSRFTWKIESISKQNCRK 337
           E E+ E PQP+EE     P  D E  PD  T  FT      +KQ+ R+
Sbjct: 267 EYEMEEKPQPLEELTVEQPPDDVEIEPDEHTDAFTAYFADGNKQHDRE 314

>SMBP2_MESAU (Q60560) DNA-binding protein SMUBP-2 (EC 3.6.1.-) (ATP-dependent|
            helicase IGHMBP2) (Immunoglobulin mu-binding protein 2)
            (SMUBP-2) (Insulin II gene enhancer-binding protein)
            (RIPE3B-binding complex 3B2 p110 subunit) (RIP-1)
          Length = 989

 Score = 28.9 bits (63), Expect = 3.1
 Identities = 11/43 (25%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +3

Query: 246  CQLSTMKVCLMHQLPDLHG---RLKVYPSRIVERSTLMFLLSG 365
            C   + + CL H LP++HG   + + +  +++ R  +++  SG
Sbjct: 907  CMHCSRRYCLSHHLPEIHGCGEKARAHARQMISREGVLYAGSG 949

>NAGS_HUMAN (Q8N159) N-acetylglutamate synthase, mitochondrial precursor (EC|
           2.3.1.1) (Amino-acid acetyltransferase) [Contains:
           N-acetylglutamate synthase long form; N-acetylglutamate
           synthase short form; N-acetylglutamate synthase
           conserved domain form]
          Length = 534

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 368 NPRQQKHQSGSFYNSAWIYF 309
           NP   KH  GSF N  WI+F
Sbjct: 482 NPWYFKHSDGSFSNKQWIFF 501

>NAGS_MOUSE (Q8R4H7) N-acetylglutamate synthase, mitochondrial precursor (EC|
           2.3.1.1) (Amino-acid acetyltransferase) [Contains:
           N-acetylglutamate synthase long form; N-acetylglutamate
           synthase short form; N-acetylglutamate synthase
           conserved domain form]
          Length = 527

 Score = 28.5 bits (62), Expect = 4.1
 Identities = 11/20 (55%), Positives = 12/20 (60%)
 Frame = -1

Query: 368 NPRQQKHQSGSFYNSAWIYF 309
           NP   KH  GSF N  WI+F
Sbjct: 475 NPWYFKHSDGSFSNKQWIFF 494

>ADAM8_HUMAN (P78325) ADAM 8 precursor (EC 3.4.24.-) (A disintegrin and|
           metalloproteinase domain 8) (Cell surface antigen MS2)
           (CD156a antigen) (CD156)
          Length = 824

 Score = 28.1 bits (61), Expect = 5.4
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +1

Query: 1   PAFSPPASPLNPSTRAANP 57
           P F+PP  P+ P   AANP
Sbjct: 777 PTFAPPVPPVKPGAGAANP 795

>APG_BRANA (P40603) Anter-specific proline-rich protein APG (Protein CEX)|
           (Fragment)
          Length = 449

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 12  PPRLSPKP*HASSESPYAPRRSSTQPSP 95
           PP+  PKP  A + SP  P+    QP P
Sbjct: 29  PPKPQPKPPPAPTPSPCPPQPPKPQPKP 56



 Score = 27.7 bits (60), Expect = 7.0
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = +3

Query: 12 PPRLSPKP*HASSESPYAPRRSSTQPSP 95
          PP+  PKP  A + SP  P+    QP P
Sbjct: 9  PPKPQPKPPPAPTPSPCPPQPPKPQPKP 36

>LOXL1_MOUSE (P97873) Lysyl oxidase homolog 1 precursor (EC 1.4.3.-) (Lysyl|
           oxidase-like protein 1) (Lysyl oxidase 2)
          Length = 607

 Score = 27.7 bits (60), Expect = 7.0
 Identities = 14/30 (46%), Positives = 18/30 (60%), Gaps = 1/30 (3%)
 Frame = +3

Query: 6   FLPPR-LSPKP*HASSESPYAPRRSSTQPS 92
           ++PPR + P+P     E PY P RSS  PS
Sbjct: 345 YVPPRAVEPQPPFRVLEPPYLPVRSSDAPS 374

>LOXL1_BOVIN (Q95L39) Lysyl oxidase homolog 1 precursor (EC 1.4.3.-) (Lysyl|
           oxidase-like protein 1)
          Length = 591

 Score = 27.3 bits (59), Expect = 9.1
 Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 1/31 (3%)
 Frame = +3

Query: 6   FLPPRL-SPKP*HASSESPYAPRRSSTQPSP 95
           + PPR+  P+P     E PY P RSS  P P
Sbjct: 329 YSPPRVVEPQPPFRVLEPPYLPVRSSDAPPP 359


  Database: uniprot_sprot.fasta
    Posted date:  May 25, 2006  5:36 PM
  Number of letters in database: 80,573,946
  Number of sequences in database:  219,361
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 41,518,208
Number of Sequences: 219361
Number of extensions: 586585
Number of successful extensions: 2002
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1923
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2001
length of database: 80,573,946
effective HSP length: 103
effective length of database: 57,979,763
effective search space used: 1391514312
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)