Clone Name | bastl41h08 |
---|---|
Clone Library Name | barley_pub |
>ref|NM_191424.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 3327 Score = 67.9 bits (34), Expect = 2e-08 Identities = 55/62 (88%) Strand = Plus / Plus Query: 134 atggtgactcctcgcgcccccgagccgccgccgcaggaccaggatgaggagatgctggtg 193 |||||||| || ||||| ||||||| | || |||||||||||||||||||||||||||| Sbjct: 1 atggtgaccccgcgcgcacccgagctcctgcagcaggaccaggatgaggagatgctggtg 60 Query: 194 cc 195 || Sbjct: 61 cc 62
>dbj|AP008207.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, complete sequence Length = 43261740 Score = 60.0 bits (30), Expect = 6e-06 Identities = 30/30 (100%) Strand = Plus / Minus Query: 166 gcaggaccaggatgaggagatgctggtgcc 195 |||||||||||||||||||||||||||||| Sbjct: 32562599 gcaggaccaggatgaggagatgctggtgcc 32562570
>dbj|AP003295.4| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0695H10 Length = 136883 Score = 60.0 bits (30), Expect = 6e-06 Identities = 30/30 (100%) Strand = Plus / Minus Query: 166 gcaggaccaggatgaggagatgctggtgcc 195 |||||||||||||||||||||||||||||| Sbjct: 25394 gcaggaccaggatgaggagatgctggtgcc 25365
>dbj|AP003106.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 1, PAC clone:P0665A11 Length = 166421 Score = 60.0 bits (30), Expect = 6e-06 Identities = 30/30 (100%) Strand = Plus / Minus Query: 166 gcaggaccaggatgaggagatgctggtgcc 195 |||||||||||||||||||||||||||||| Sbjct: 150120 gcaggaccaggatgaggagatgctggtgcc 150091
>ref|XM_527529.1| PREDICTED: Pan troglodytes similar to peptidylprolyl isomerase-like 4; serologically defined breast cancer antigen NY-BR-18; PPIase; cyclophilin-type peptidyl-prolyl cis-trans isomerase (LOC472150), mRNA Length = 2313 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 147 gcgcccccgagccgccgccgc 167 ||||||||||||||||||||| Sbjct: 354 gcgcccccgagccgccgccgc 334
>gb|BC097250.1| Danio rerio zgc:114203, mRNA (cDNA clone MGC:114203 IMAGE:7433540), complete cds Length = 1752 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 156 agccgccgccgcaggaccagg 176 ||||||||||||||||||||| Sbjct: 443 agccgccgccgcaggaccagg 463
>ref|NM_138785.1| Homo sapiens chromosome 6 open reading frame 72 (C6orf72), mRNA Length = 1143 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 147 gcgcccccgagccgccgccgc 167 ||||||||||||||||||||| Sbjct: 110 gcgcccccgagccgccgccgc 130
>ref|NM_001030267.1| Danio rerio zgc:114203 (zgc:114203), mRNA Length = 1752 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 156 agccgccgccgcaggaccagg 176 ||||||||||||||||||||| Sbjct: 443 agccgccgccgcaggaccagg 463
>gb|AY358952.1| Homo sapiens clone DNA60783 EGAP710 (UNQ710) mRNA, complete cds Length = 1215 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 147 gcgcccccgagccgccgccgc 167 ||||||||||||||||||||| Sbjct: 224 gcgcccccgagccgccgccgc 244
>emb|AL078581.11|HSDJ12G14 Human DNA sequence from clone RP1-12G14 on chromosome 6q24.1-25.2 Contains the 5' end of the PPIL4 gene for peptidylprolyl isomerase (cyclophilin)-like 4 (HDCME13P ), a novel gene (LOC116254), a ribosomal protein S18 (RPS18) pseudogene, the KATNA1 gene for katanin p60 (ATPase-containing) subunit A 1, three novel genes and two CpG islands, complete sequence Length = 102019 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 147 gcgcccccgagccgccgccgc 167 ||||||||||||||||||||| Sbjct: 43108 gcgcccccgagccgccgccgc 43128
>gb|BC014320.1| Homo sapiens chromosome 6 open reading frame 72, mRNA (cDNA clone MGC:22821 IMAGE:3686673), complete cds Length = 1143 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 147 gcgcccccgagccgccgccgc 167 ||||||||||||||||||||| Sbjct: 110 gcgcccccgagccgccgccgc 130
>emb|CR595369.1| full-length cDNA clone CS0DI041YA22 of Placenta Cot 25-normalized of Homo sapiens (human) Length = 1183 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 147 gcgcccccgagccgccgccgc 167 ||||||||||||||||||||| Sbjct: 142 gcgcccccgagccgccgccgc 162
>emb|CR595295.1| full-length cDNA clone CS0DB005YB15 of Neuroblastoma Cot 10-normalized of Homo sapiens (human) Length = 1070 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Plus Query: 147 gcgcccccgagccgccgccgc 167 ||||||||||||||||||||| Sbjct: 74 gcgcccccgagccgccgccgc 94
>gb|CP000251.1| Anaeromyxobacter dehalogenans 2CP-C, complete genome Length = 5013479 Score = 42.1 bits (21), Expect = 1.3 Identities = 21/21 (100%) Strand = Plus / Minus Query: 147 gcgcccccgagccgccgccgc 167 ||||||||||||||||||||| Sbjct: 80730 gcgcccccgagccgccgccgc 80710
>gb|AC170875.2| Mus musculus BAC clone RP24-266D3 from chromosome 3, complete sequence Length = 155248 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 341 cactctgatgtttttgttgt 360 |||||||||||||||||||| Sbjct: 99096 cactctgatgtttttgttgt 99077
>gb|AC166931.3| Mus musculus chromosome 8, clone wi1-2751F18, complete sequence Length = 44136 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 catgaccatggtgactcctc 146 |||||||||||||||||||| Sbjct: 22624 catgaccatggtgactcctc 22643
>gb|AC102481.10| Mus musculus chromosome 1, clone RP24-427A3, complete sequence Length = 145973 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 297 catggaagattgaaagtata 316 |||||||||||||||||||| Sbjct: 1812 catggaagattgaaagtata 1793
>ref|XM_509960.1| PREDICTED: Pan troglodytes similar to suppressor of cytokine signaling 4; suppressor of cytokine signaling 7; SH2 domain containing SOCS box protein (LOC452919), mRNA Length = 3772 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 ccccgagccgccgccgcagg 170 |||||||||||||||||||| Sbjct: 2052 ccccgagccgccgccgcagg 2033
>ref|NM_187599.1| Oryza sativa (japonica cultivar-group), predicted mRNA Length = 1020 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 cgagccgccgccgcaggacc 173 |||||||||||||||||||| Sbjct: 613 cgagccgccgccgcaggacc 594
>gb|CP000151.1| Burkholderia sp. 383 chromosome 1, complete sequence Length = 3694126 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 65 cccgcggcgatcgtcgacgc 84 |||||||||||||||||||| Sbjct: 2544568 cccgcggcgatcgtcgacgc 2544587
>gb|AC162446.2| Mus musculus chromosome 8, clone RP23-410L16, complete sequence Length = 197906 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 127 catgaccatggtgactcctc 146 |||||||||||||||||||| Sbjct: 4517 catgaccatggtgactcctc 4536
>gb|AC164600.5| Mus musculus chromosome 1, clone RP23-366M5, complete sequence Length = 191581 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 297 catggaagattgaaagtata 316 |||||||||||||||||||| Sbjct: 61232 catggaagattgaaagtata 61251
>gb|DP000009.1| Oryza sativa (japonica cultivar-group) chromosome 3 Length = 36102668 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 cgagccgccgccgcaggacc 173 |||||||||||||||||||| Sbjct: 6514083 cgagccgccgccgcaggacc 6514102
>ref|XM_539418.2| PREDICTED: Canis familiaris similar to ocular development-associated gene (LOC482301), mRNA Length = 1237 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 148 cgcccccgagccgccgccgc 167 |||||||||||||||||||| Sbjct: 504 cgcccccgagccgccgccgc 485
>emb|Z69885.1|CET04C10 Caenorhabditis elegans Cosmid T04C10, complete sequence Length = 20958 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 344 tctgatgtttttgttgtcgg 363 |||||||||||||||||||| Sbjct: 2756 tctgatgtttttgttgtcgg 2737
>gb|AC107226.2| Oryza sativa (japonica cultivar-group) chromosome 3 clone OSJNBa0081P02, complete sequence Length = 162425 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 cgagccgccgccgcaggacc 173 |||||||||||||||||||| Sbjct: 56845 cgagccgccgccgcaggacc 56864
>gb|AC102031.7| Mus musculus chromosome 3, clone RP23-14C8, complete sequence Length = 181179 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 341 cactctgatgtttttgttgt 360 |||||||||||||||||||| Sbjct: 166542 cactctgatgtttttgttgt 166561
>emb|AL160398.27| Human DNA sequence from clone RP11-15N12 on chromosome 6 Contains the 5' end of the gene for the possible ortholog of R. norvegicus ion transporter protein (NRITP), complete sequence Length = 134995 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 339 tccactctgatgtttttgtt 358 |||||||||||||||||||| Sbjct: 41535 tccactctgatgtttttgtt 41516
>emb|BX569689.1| Synechococcus sp. WH8102 complete genome; segment 1/7 Length = 348764 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 158 ccgccgccgcaggaccagga 177 |||||||||||||||||||| Sbjct: 214687 ccgccgccgcaggaccagga 214668
>emb|BX649493.8| Zebrafish DNA sequence from clone CH211-226H23 in linkage group 2, complete sequence Length = 175551 Score = 40.1 bits (20), Expect = 5.1 Identities = 23/24 (95%) Strand = Plus / Minus Query: 272 cctgatgcatcaacttccagattt 295 |||||||||||||||||| ||||| Sbjct: 148086 cctgatgcatcaacttcctgattt 148063
>gb|DQ397852.1| Cenarchaeum symbiosum clone C15D08, complete sequence Length = 38754 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 gccccgcggcgatcgtcgac 82 |||||||||||||||||||| Sbjct: 24468 gccccgcggcgatcgtcgac 24449
>gb|DQ397850.1| Cenarchaeum symbiosum clone C09B07, complete sequence Length = 40824 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 63 gccccgcggcgatcgtcgac 82 |||||||||||||||||||| Sbjct: 19012 gccccgcggcgatcgtcgac 19031
>gb|DQ397849.1| Cenarchaeum symbiosum clone C08E01, complete sequence Length = 37303 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 63 gccccgcggcgatcgtcgac 82 |||||||||||||||||||| Sbjct: 32712 gccccgcggcgatcgtcgac 32693
>dbj|AP008209.1| Oryza sativa (japonica cultivar-group) genomic DNA, chromosome 3, complete sequence Length = 36192742 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 154 cgagccgccgccgcaggacc 173 |||||||||||||||||||| Sbjct: 6513296 cgagccgccgccgcaggacc 6513315
>gb|AC104698.2| Homo sapiens BAC clone RP11-517F1 from 2, complete sequence Length = 115170 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 146 cgcgcccccgagccgccgcc 165 |||||||||||||||||||| Sbjct: 29985 cgcgcccccgagccgccgcc 30004
>gb|AC007058.2|AC007058 Homo sapiens chromosome 14 clone containing intron for neurexin III, complete sequence Length = 95956 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 332 agaaagatccactctgatgt 351 |||||||||||||||||||| Sbjct: 44375 agaaagatccactctgatgt 44394
>dbj|AK104423.1| Oryza sativa (japonica cultivar-group) cDNA clone:006-205-E09, full insert sequence Length = 1319 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 cgagccgccgccgcaggacc 173 |||||||||||||||||||| Sbjct: 677 cgagccgccgccgcaggacc 658
>dbj|AK070170.1| Oryza sativa (japonica cultivar-group) cDNA clone:J023041A11, full insert sequence Length = 1329 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 154 cgagccgccgccgcaggacc 173 |||||||||||||||||||| Sbjct: 680 cgagccgccgccgcaggacc 661
>emb|AJ307029.1|BTA307029 Bos taurus partial COL1A1 gene for pro alpha 1(I) collagen, exon 1 and joined CDS Length = 5417 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 21 ctctcccctaaaccctagca 40 |||||||||||||||||||| Sbjct: 3011 ctctcccctaaaccctagca 2992
>emb|AL139316.5|CNS01DXH Human chromosome 14 DNA sequence BAC R-698F20 of library RPCI-11 from chromosome 14 of Homo sapiens (Human), complete sequence Length = 192440 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Plus Query: 151 ccccgagccgccgccgcagg 170 |||||||||||||||||||| Sbjct: 97250 ccccgagccgccgccgcagg 97269
>gb|AF031421.1|HSLGALS3S1 Homo sapiens galectin 3 (LGALS3) gene, exon 1 Length = 1403 Score = 40.1 bits (20), Expect = 5.1 Identities = 20/20 (100%) Strand = Plus / Minus Query: 151 ccccgagccgccgccgcagg 170 |||||||||||||||||||| Sbjct: 704 ccccgagccgccgccgcagg 685 Database: nt Posted date: May 29, 2006 11:10 AM Number of letters in database: 3,984,495,279 Number of sequences in database: 917,343 Database: /shigen/export/home/twatanab/db/nt/nt.01 Posted date: May 29, 2006 11:16 AM Number of letters in database: 3,988,174,986 Number of sequences in database: 835,257 Database: /shigen/export/home/twatanab/db/nt/nt.02 Posted date: May 29, 2006 11:21 AM Number of letters in database: 3,991,246,324 Number of sequences in database: 771,481 Database: /shigen/export/home/twatanab/db/nt/nt.03 Posted date: May 29, 2006 11:27 AM Number of letters in database: 3,990,718,311 Number of sequences in database: 977,174 Database: /shigen/export/home/twatanab/db/nt/nt.04 Posted date: May 29, 2006 11:29 AM Number of letters in database: 1,278,410,368 Number of sequences in database: 400,813 Lambda K H 1.37 0.711 1.31 Gapped Lambda K H 1.37 0.711 1.31 Matrix: blastn matrix:1 -3 Gap Penalties: Existence: 5, Extension: 2 Number of Hits to DB: 2,962,407 Number of Sequences: 3902068 Number of extensions: 2962407 Number of successful extensions: 56992 Number of sequences better than 10.0: 41 Number of HSP's better than 10.0 without gapping: 41 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 56673 Number of HSP's gapped (non-prelim): 319 length of query: 383 length of database: 17,233,045,268 effective HSP length: 22 effective length of query: 361 effective length of database: 17,147,199,772 effective search space: 6190139117692 effective search space used: 6190139117692 T: 0 A: 0 X1: 6 (11.9 bits) X2: 15 (29.7 bits) S1: 12 (24.3 bits) S2: 20 (40.1 bits)